Array 1 59971-60139 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK213481.1 Streptococcus pyogenes ABC020047993 adVpl-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 59971 36 100.0 31 .................................... GATTGACCACAACATCCAACGCTTAGGTTAT 60038 36 100.0 30 .................................... AATAGAGCTAGACAAAAAATTGAGTTTGAC 60104 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 96.3 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGAGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGAGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTAGTGATGATTGGGAAATTTTTAGTATGGTGCATGGGTCTCATTTAAGCGACTCTGCT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 436591-437422 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK213481.1 Streptococcus pyogenes ABC020047993 adVpl-supercont1.2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 436591 25 100.0 42 ......................... CAAACGTAGCAAATTCTACTTTTACAAAAGTTGGAATTTCAA 436658 25 100.0 42 ......................... GCTTTATCGATTTTTTAGAATATCTAGCCGAATCTATTTCAA 436725 25 100.0 43 ......................... ATTGGCCAGAATCATGTTCAATATGTCCTAGTTCATATTTCAA 436793 25 100.0 43 ......................... GTAACCCTAACTGATCAAGATGCAGGAGATGAAATTATTTCAA 436861 25 100.0 43 ......................... GTAACCCTAACTGATCAAGATGCAGGAGATGAAATTATTTCAA 436929 25 100.0 43 ......................... GTAACCCTAACTGATCAAGATGCAGGAGATGAAATTATTTCAA 436997 25 100.0 43 ......................... GTAACCCTAACTGATCAAGATGCAGGAGATGAAATTATTTCAA 437065 25 100.0 43 ......................... GTAACCCTAACTGATCAAGATGCAGGAGATGAAATTATTTCAA 437133 25 100.0 41 ......................... GAACTCTATGTTTCCTTTTATCTGCAAAATCGATATTTCAA 437199 25 100.0 41 ......................... TGTATCAATTGGTGAAGAGTGTGCCATCATTATAATTTCAA 437265 25 100.0 41 ......................... CGGTAATAAATACAAGCCTAGTCAAGCTATGCGCATTTCAA 437331 25 100.0 42 ......................... AAGGGGCACCACAATAACCGCATTTTGCTATGTGAATTTCAA 437398 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 13 25 100.0 42 TCCACTCACCCATGAAGGGTGAGAC # Left flank : TCTTAATGGTAATGAGGCCCATCTGATGAATCCCCAAGATAATGACCAAGGCTCCCAGTAAGTACCGAAACCATACCGTATAAAGGATATTTCCTAAAAAACCAGCCCCGTAACCTAAAATCACAAAAATAGTAGATAGACCAAAAATAAAGGCTAAAGTTTTGACAATGCCATACCAATAGAGTTTTTTACCAAATATAGTAATCGTCTTTGAATCATCTGCATCCAGTAAAATGCCTAAATAGACAGGAAGGACCGGAAAGATACACGGAGAGAAAAATGATAACAAGCCTGCCCCAAAAACCGATACCATTAATACAAGTGATAGTATCATAAATAACTCCTCTCTTAAGTTACCCTTAGTTTACCGAAAGCTAGTGGCGCAAACCATAGACTAGAACATGCAAAAACTTGAATTTGATACGCTATCAGATAAATGGTTGACTAAAGGCATGTAAAAACCCGACCTCTCTTTTAATGAGGTCGGGTTCATCTTTCAA # Right flank : CTGCGCCAAATGACACAGTTTATAGAGAAACGGATGGCACACATAGAGGTGTTTTAAGCCTTTTTATCTCCATTTCGCTTCTTTTTTAAGTTATTTTTGCGCGAGCAAGCAAGGTTTTTCTGTGAAAGCTAGCTTCGCACAAGAGATTTTTACAATAATAAGACACCTTTATCTGGGTCATAGCTGTCTGAGCGACCAAGTGTTTCCACACGCCTCTGCCAATTTTTCCCCAATAAATAAAAGCGAATACTATCAGTTTTCTCATCAATGATTTGTGTTAAGCGGTGCTTTATATCCACAAATTCTGCGGGTGTCACAGAACATTCAAAAACAGAATTTTGAACACGTTGCCCATAGTCCACACAGAGTTTGGCAACATGACGCAATCTTTTTCTACCAGCAGGTGTTTCCGTATTTACATCATAAGTGACTAAAACCATCATATAACATCTCCTAAACCATAAAAGGTGGATAGCTTTCTAAATCTCCTCGTATGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCACTCACCCATGAAGGGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //