Array 1 105646-105485 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCH01000028.1 Pseudoalteromonas rubra strain S2678 S2678_S29_L001_R1_001__paired__contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 105645 23 100.0 44 ....................... GTACCGTAAACTTCAAACGTGTTAACAGAGAAGTACCGGTAGCT 105578 23 100.0 48 ....................... CCCGTTTTCTGTTGCTTTTTACTTAATTTTTTCATTGTACCGGAAGCC 105507 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================ ================== 3 23 100.0 46 CCGACTTTAGAGGGGATTGAGAC # Left flank : CGGCCGACAGCAGGCCATGACCGAATACTGTTCACACCTTCAAAAGCAGCGACGCCCAAACCTGACTAACTGCGAGCGCTTGTTGGGATAGAACCCCTTATCTCAACCATTTAAAATACAACTGCAACACTGGCAGAGCTCTATCGTGGGCGATCGCCTGCAATTGAGCGCAATACGGCGTTACTTGAGCGGTAGCCAGCCGGAATGTAGCTTAGCTCTGATATTCCTTACTTCATTTTTTGAAAAATGTTCAACCCGATTAGGCAAAGCTCGGCGCCAGAGCTTTGCTGGCTTTACGATTGGGTGTCCATGCTTTTTGTTTTTGTACGACGAGGCCTCGATCCGCTATAGTACTGGTGACCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGACTCGAAGGTGAGGCCCTGGACGGCCGAACTGGTTGGCGCTTCATGGATGAATCAACGATACCACTGTTGAAATGATTGGCTAAGTGACC # Right flank : ACTCTTGGGTTTCTCCCATATGCTTGCATATTACGTACCGGAAGCCCCGACTTTAGATGCTGAGAGCCGCCCGGAAAAAGCATCGCTTTTTCAGGCTCGATGAGTGAAAATCATGCGTTTTAAAAAGCACCGCTTTTTGCGTGATTTGAACACTGGAGGCAGGACGCCGTAAGCCAGTTTTGGTATTTTGCAGGGAAAGCAAAATAGTAAAACAGGCCCTGGACGGCCGATTCTGGCGAACGCACCGCTTAGCGCTTCATGGATGAATCAACGATGCCGTTGTTGAAATGATTGGCTAAGTGACCCCCGACTTTAGAGGGGTATTCTGTGTTCGAAATTGATACCACATCCAAACAACTCATTAAACTGCAGCGACAGCTGAAAGAGCTGCTTAAACCCAACGACAAAGCACACCTCTTCCCGTTATGCGGAAAATGCATGGGTAACCGAAAAGCAGATGGTGCCGGTCAGGTCACCTGGCCTGAGCGATTTTATTACTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9309-9606 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCH01000085.1 Pseudoalteromonas rubra strain S2678 S2678_S29_L001_R1_001__paired__contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9309 32 100.0 34 ................................ TGCGCGGGTGGTTTTGAGCTGCTGGCTGACGGTT 9375 32 100.0 35 ................................ ATTGCCAGGCGGCGAAAGAGAGACGGTAATGGAAT 9442 32 100.0 34 ................................ CTGGAGTATAAATGGTATCAAAAATAATCCAGGA 9508 32 93.8 34 ....C..........T................ ATCTTGCCTCATAGTTCTTACTCCAATGGTTTTA 9574 32 75.0 0 ....C.T........T.........AC.CCG. | T [9597] ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.8 34 GCTGTGCTCCCCGCGCGAGAGGGGATTGAGAC # Left flank : ATCTGATCATTGAGAATCGCGATGGCTGCGATATGCGTTGTTACGATGGTGAGTCTGAAAACGCTTTGAACGGTATCAGCGAGAAGTCTCAAGTTAAGTTTACGGTTTTGGCTAAAAGTGGTGACTAAAGTATCGCCCTTGTACACTTGATATGGAAAGCTATGCAAGCAGGTTTAGTTAAACACCTTTTGGTCTGTAAGAAAGATACCGGCTCAAGGCCGGTATGACGGCGGAGCGGGCGTTTAACTTTAGAGATTTGAATCTGCCGTATTGTGTTTTGTCATTGTATGCTTGGGGCCAACTTTCCCAGTCAATCATTTTATTTGCGCTAACCCCTGGTTCTCATAAAACCCCGGGAGGTTAGCGCTTCTGTATGTTGATGTTTATTATGGTATTGTGTAATCTTGTTGCACAAAATTCAGTTGCGTTGGGCAATTTTGACCCAGGTTAGCGCAAAAAGCCGATTTTGGCCTTGTATAATGTGGGCCTTAAAGCAGGCC # Right flank : TCGGAAAAAGCACTGCTTTTTCAGGCGTGAACGGTGAAAAGTCATGCTGTTTAAGCAACGCTTAAATGACTTTGAACACTGTAGGCAGGAAGCCGAAAGCCGGTTTTGGTGATTTGCATGGACAGCAAATCAGTAAAACAGGCA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCTCCCCGCGCGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 80788-82099 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCH01000016.1 Pseudoalteromonas rubra strain S2678 S2678_S29_L001_R1_001__paired__contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80788 29 96.6 32 ..T.......................... CCGTTCGCCGTTAGTCTCAGATTAATGTCGTT 80849 29 96.6 32 ..T.......................... CGTGTTGACATCGACTTTGCAAAGAAGGTTGA 80910 29 96.6 33 ..T.......................... TATTGTTACTGTTTCAGCGGCGCATACGTCGGC 80972 29 96.6 32 ..T.......................... GGTGCAACAACTGGCGGTGGTGGTGGGACGGA 81033 29 96.6 32 ..T.......................... GGGGAGGGTGTATGTGGGCAGGTATTTGGAAC 81094 29 96.6 32 ..T.......................... CCTGGCCCATACCGATTATATCTATCCCTCGA 81155 29 96.6 32 ..T.......................... GCCCACTTTACAGCGCCGCTGATGGCGTTTTT 81216 29 100.0 32 ............................. CAGGCTGCAATCAGAGCTTCCTCCCTGGTCCC 81277 29 100.0 32 ............................. GTACCGTTGTATGCCTTGATCACATGCTTGTT 81338 29 100.0 32 ............................. CTCTACAGCAGCAATAACCGTCATATCATTTG 81399 29 100.0 32 ............................. GCGAGCGTGGTGCAAATGGTCGTGATGGTGAG 81460 29 100.0 32 ............................. AATATGGTATAAAATCCTAAACACATGATTAC 81521 29 100.0 32 ............................. TTCAGTATTAGGGTTGGTTGTAGGATTTAAAT 81582 29 100.0 32 ............................. TAAACTGGATCCTTTGGAATCAACGATTCTGT 81643 29 96.6 32 .......................G..... AATGCTTGAGCCGCATGAGCTGTATGCTGCCA 81704 29 93.1 32 ..............T........G..... AGGTTTGGGAGTAATCATGGCACGCGGAGTAA 81765 29 93.1 32 ..............T........G..... TCCATTAATGTGTCCGGATTGATCTCGACTGA 81826 29 100.0 32 ............................. CAGACATTTGCCGATGACGTCAGAGACCTGGA 81887 29 93.1 33 .....T......................A GAGTAGAGGTTAATGACATGGTTCGCGTTTTTC 81949 29 89.7 32 ..........T.CA............... CGATTTTATGTCCAGTTGTCGCGCCGGTAATT 82010 29 82.8 32 .A..........CA.......T.G..... TTCATAGGCTTTTTTTGCATTGTGGTTTATTG 82071 29 86.2 0 .A...............T........T.T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.9 32 GTGTTCCCCGCAGGCGCGGGGCTAAACCG # Left flank : CTTCTGGTTCGACACCCTCCAGCTGATTATTCTCAACGTACTCTTCCCAACCCTCACCGCACTACTGGGATATGTATTTGGCACCAGCAGGAATAATGGGGCGTAGAAAGGGTGGAAGAATGCAGGGTTTGTATATGGTTGCAAACTTTGCACAACAAGGGTGAATTCTGGCTTGATGGCAATTTTCTCTATCTGTTTGGCTTTTTACAACAGTATGTTTTGCGGTTATTGAAGCCGAATGGATGCTCCTGCTCACCTCGCCACTGGCGGCATTTTTAGCCGCGATACTGTTAGGCCTGATCTTGTTCTATTTATTTATGGCTCTGGCTGTCACTCTTTTTTCTTGTCTACTGTGTTGCTACATTAAACAGATGCTCTTTAAAAACATGGCTAAATAGCGAATGAATCAATGCAAGATCTGACCTGATCTTGTACCTAATATTTTCGGTAACTTTTTCAATACGACTTTTCTTTAATGAAAACAAGTATATAATTTTAGA # Right flank : TGGTTCGAGTCGGTTATGGGTTGTACGACTTCGAAATCACAGGGGGTTGAGTTATCTGTTTGGGTTGAATCAGCACTTTTTGATGGTTTGGTGGTCGATCTCGGCTCTTCGTTTTTTTCAAAGTGTTCTTTGTACTCAAAGTCATGTAAGTTGGCGTGGACAACCTCTCTGACAGGGATGTTGATGAGGAATTTTTCTAAGTCTAATACCTCTTCATCTGATTGGTTTGCTTCTGGGTTGTCTTTGTTGCTGGTTTCAATATCTGACCAGGCGGAGGCATAATTGGTGACCAACTCAAGGCGTAACTCGTCTTTACACCTGTAACCACTCTTGAGTGGAAGTACCATAAAATCGTTCATGTGGTATCCCAGATTAATCACATAGCCAATATAAACCTTGCGGCTTGAAAGCGTAAAAGCAATTGGCAGCCCCTTGAGCATGCTGTTGTGGAGTATACCTGTAAACTCGGGCGTATCATCAGTGCCAGACAAGCTAAAGTA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGCTAAACCG # Alternate repeat : GTTTTCCCCGCAGGCGCGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93947-95442 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCH01000016.1 Pseudoalteromonas rubra strain S2678 S2678_S29_L001_R1_001__paired__contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 93947 29 100.0 32 ............................. CCCTTTTTACCGCAGCGTTAGCTGCTATGGCC 94008 29 100.0 32 ............................. TCTACAAAGAGACTGGCGATGTGGCTAAAACC 94069 29 100.0 32 ............................. AGTCTCAGATTTCAACACAGCGCGCGCAAATT 94130 29 100.0 32 ............................. CGTATTAATTGCCTCAGCATCTATCTCACTGG 94191 29 100.0 32 ............................. CCATTGCGGCCGGTGCGGCCCTGTTGTTCAAC 94252 29 100.0 32 ............................. TGTTGGCGTAGCTTGGCAACTCAAACACTCCT 94313 29 100.0 32 ............................. CAGGTGTATTTCATTTGTTATTTTGGATAGGT 94374 29 100.0 32 ............................. TTCCATCTCCACTACCAGAACGGGCCGCAGCT 94435 29 100.0 33 ............................. TCAACGTCCATTTTCCCAATGGCCTCTACTAGT 94497 29 100.0 32 ............................. GTCGGCCCAAAACGGCTCCTCTGAGCGATTAC 94558 29 100.0 34 ............................. GCATTCAGCTCGCGAAACGTGCTGTTCGCGCGGC 94621 29 100.0 31 ............................. TAAGGGCCGTATTTGGCGGCTGACTGCTCGC 94681 29 100.0 32 ............................. CTTATGCGAGTGCGATACGGGCCAAATAACGC 94742 29 100.0 32 ............................. TAAATTGAAACTTTCCCCATCCTACATAGGCC 94803 29 100.0 32 ............................. GGACCAACGGCCAGGCAATGTTACCTGACGTA 94864 29 93.1 32 ............CA............... CATGCTGTTTGCCGTTGTAAACGGCCTTTATA 94925 29 93.1 32 ............CA............... CACGCACGGGAGCTGGGCCAGCGTTGTCGCAT 94986 29 93.1 32 ............CA............... GATGCACATTCGATGGTCAAACAGGCTGTAAA 95047 29 89.7 33 GC..........C................ TTCAAAACGAACTCAAATCAACCATAGCACTTC 95109 29 89.7 32 G.A.........C................ CAACCTGTGACAGCGCCTCTGTGAGTGCATCC 95170 29 89.7 32 G.A.........C................ ATCTCTCGTTGGCTCAATACCGGTGTTGGTTC 95231 29 93.1 32 GC........................... TTCCTGGGCGTAAACACGGTATTAAACAGCGA 95292 29 89.7 32 GC..........C................ ACAAAGAAACATTTTCCGGGCTGGCTATACGA 95353 29 89.7 32 G.A....................A..... CCCCCAAAACCTAACGCTCATGGGCGGGCTGA 95414 29 82.8 0 G...........CA........CA..... | ========== ====== ====== ====== ============================= ================================== ================== 25 29 96.1 32 CTGTTCCCCGTATGCACGGGGCTGAACCG # Left flank : TTGGTGACGAGGGCCATCGCAGCGGAGGCTCATTATGAGTATGTGTATGGTTGTGACTGAGGCGGTGCCACCGAGATTAAGAGGTCGCCTGGCAGTATGGCTGCTGGAGATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATTTGGTTTCAGGTGAGTGAATTAGCTGAAGACGGCAATGCGGTCATGGCCTGGGCGACCAACACCGAATCGGGTTTTGATTTTATCACCTATGGTGAAAATGCCAGAATGCCGGTGGATTTTCATGGCCTAAGATTGGTGAAGTATACCCCCAGATCTGATGATAATCAGGGAGGGGATTAGCGAATTATTTCCGCCATTCTATCTGTGATTTATTGCTCTTTAACAAGTTGGATATTGAGATTTAAAGGCTCAAAAAATAGATACATTTGTACCCAAAAATTTCGGTAGATTTTAAAGTGTGTTTTTTCTTTATAAAAAACAAGTATATAATTTTAGA # Right flank : GTAGGCATTTGCTGTGAAAGAAGGCGATAAGCTTTTCCGGCCACAAAGCGAACGCGTTAAGATCTGGTAGTCAATTGGCCAGGTTTCAGCTGTTTCTCCAGGCGGCACAGCCGTGCTCGTCTGAGGGAGTCACTGCCTAGCCTGGCTCTGTGCAGAGCTTATATCGCGATGGTTAAGTTTCCGATTCTGGTTGTGCTCTTGGCATGAATTAAAAAGGGCGCCACTTAACGGGCGCCCTGTTTTTTATGTCGCGTATTGCTGATGTAGAGTTTAGGTTAGTTCAGCTTCTGCCAGCTGACATAGCTCATGCAATACTTTGACATAAGCGTGTGCCAGCCCTTCAATGGTCTCCCGACGGTGAATGGCATGACTGAAAGACCAGTGGAAGCTGATCTGTCCCTGGTTCACAAAACAGTCGATCCCCAGTAAGGCAGAGCGATGGGCTTTCGGGCTGTGTAGCGGTCCGATGGCGTCATCGCTAATCACCATCTTGGGCGATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTATGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //