Array 1 59493-59914 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LJJD01000035.1 Alkalihalobacillus plakortidis strain DSM 19153 scaffold16, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     59493	    32	 100.0	    34	................................	TATTACGATATCTTGTAGTCATCTAACTGAATTT 	
     59559	    32	 100.0	    35	................................	CTGCAGCAGTCGGCTACGATTGGGAGCTTACAAAA	
     59626	    32	 100.0	    34	................................	CAAGACCCTCGCCAGTAAATTCACCTATCTCAAT 	
     59692	    32	 100.0	    24	................................	CGTAAACGTCTTGATTTGACACTC           	Deletion [59748]
     59748	    31	  87.5	    33	.A..T.-....G....................	AAGATGGGCAATTTATTTTGTTTCGAGATAATC  	C,CAC [59761,59763]
     59816	    32	 100.0	    35	................................	TTACCTACTTATATTGTTTACAAAAAAGCAATAAA	
     59883	    32	  78.1	     0	..........C..GA........A...C.T.C	|                                  	
==========	======	======	======	================================	===================================	==================
         7	    32	  95.1	    33	ATCGCACTCTATATGAGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GTATGTAGAAGATGCACGTTTGTCTAACTTAATGAGATAAAGCAAATTATTATTATTATCTAGTGAATGTTATAGAATAAAAGTATTACGTCTTACCGTTATAAAAAATGGTCGCTGTTCATCAATTGCGCGCCATATGACCTTTTTTACAATTAGACGAACTCTATTAAATTTATGCAGGAAGATCATTTATCAGGGGTCAAACAATAGATTTTTATTGTATGAAAAAAGGAAATCAGTGAATTTATTAGAACAATTAATAAAGAACCAATTCCAAGTCACAAGTTTAAAGAGACTATCTTCATTTAGGAGAACCTTTTTTGAAAGTAACTTCATAATTGGTGCGAACCCCAAGCGAACATAAAAACCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTAGCTAAAAAATCTTACCTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT
# Right flank :  CTACAGGAATTGAGGGAATCTGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGTTAGTGAAATGTGTGAGTCTGCAGCTTAAGCGCCCTTTAACAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGCTCAGTCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAGGTAGAGGATAAACGGAATCCACAGCACCATAATTATTGGAAACGAGAGGCTCTTATCCATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGAGTTCATAAGCAGTTCTCGAAGGAAGACTTTGCTGTTATAGCGAAATCAATCGGACATTTTAACGGAACGTAC

# Questionable array : NO	 Score: 8.93
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATCGCACTCTATATGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.38%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.40,-2.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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