Array 1 142514-142246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPS010000010.1 Pseudomonas cichorii strain LCYJ07 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 142513 28 100.0 32 ............................ TGAATGGTCTTGCTTTCAACCAAGTAATCGAT 142453 28 100.0 32 ............................ TCGATCATTTCCACACGACTGGTGCCGATGTG 142393 28 100.0 32 ............................ ACAGCCAAAAAGACCGCGCAAAGCTGGCGAAC 142333 28 100.0 32 ............................ ATCTTCGAAATTCAGATAGAATGCGTTGTTGG 142273 28 89.3 0 ............A.......T.T..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGGCTTAAGCTTGAAGTACGTGCTATGGCGGCTGTGCGTCGGAGATCTTCGGGGCTGCCGGTTTCCTGGATACCGGTTCGTCAACCTTCGCACAGCTGCCACCCATTCGTTTGACGACGTCGTTTGGCAGCTTCAATCATCCAGGAGCTACGCCGATGTACACTCTCAATCCCTCTGCGCCCTGCACCGACCAATTTGAAGCCCTCGTTTTCAACCGCCATCACCGCGCCTTGCGTGCCGTCACGTCCGACGCTCAGGCCTGGTTTTGCCTGTCGGACCTTGCGCGTCTGATGGGCAAGCGGCTCGTGATGTGAAAAGCGATTGACCTTCGCGCCCGGCAGTTTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCGGCCCGCTTCAGCCCCTTTAAAATCAATGACTTATAAACACCTCGAAAAAAAGGGTAAAACTGCGCTATGGCCATGGTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : CTTTGCGGCATCAATGACGTCTCGCGGATAAATCCGCTCCTACGCCGAGACGGCGGGTGATTACCTACAGGCAGTCCGTATCTCACCCAACTCTTTTGCCCTACCGCACATAACCCTTCGGAACCGAACAGGTAAGATAATGCTCTTATAGTTCACTGATGTGACCGAGCGTTGAGGGTGGGTGTGTGAGTGATAATAAAGTCAGGGTGAATAACCTGGTTACGGGTGATATCTCTCATCCGCAAAAAGATATCTTTTTTGCAGCCGTCGAAACCACCCGGATGCCGATGATATTTACCGACCCTCATCGCCCGGATAATCCCATCATCTTTGCCAATCAGGCTTTTCTCGAGATGACGGGCTATTCAGCCGATGAGATCGTGGGCCGTAACTGTCGCTTTCTGCAGGGGCCGGAAACGGATCGCGAAGTTGTCGCTGCCTTGCGCCAGGCCATTGCAGACAAGCAAGACATCGCGACGGAAATCCTGAACTACAAGAAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 154099-153711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPS010000010.1 Pseudomonas cichorii strain LCYJ07 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 154098 28 100.0 32 ............................ CATGCCCGACGATAAAGCCGCTGGTTAATAGC 154038 28 100.0 32 ............................ AACAACTGGAGCAAGCGACAGACTTCGGCTGA 153978 28 100.0 32 ............................ TCGATGGCGATCCGATCCGGCCCGCTCAGCAC 153918 28 100.0 32 ............................ TAGGCCTGTGTACATGAGCATGATCGGCCTTC 153858 28 100.0 32 ............................ GATCTAAAGCGTTCGGGCCGGTCTGGCGCAGC 153798 28 100.0 32 ............................ CAGCAGTTGAAGACGATCATGCGACTGTCAGG 153738 28 92.9 0 ...........CA............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGCTAGTCATTTCTATCCAAAATTCTATCCAAATTTTCTACCCAAAGACACTGAAAGCCTTTAAATACGCTGACTTGCTGGCTCGCAGCGTAATTTTGAGGGAGTTCGAGTCCCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAAAGCTTGAGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGTCTGGGTTTTGGTGATTATCCAGTCTGCCTGCTGGGCCTGTAAGAGCGAATTCATTCGCGAAACGGCATTCCAGATAATACATCTCCTGTGAATGTACCGGCCTCTCGCGACTGAAGTCGCATCCTACAAGTCCGGTGCCAGACCACCACCTAACGCACCCTCTTTTTGACCCTCTTTTTTCGCCCCACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGGCGAAAAAAAGGGGTAAAACGACCGCAAGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGCCTA # Right flank : AAACAGGGCTATTTCGGGTATGGTCCGCTTCGTTAACTGCCGCCCAAGCAGCCCTACTCCACTTCATAACACCAAATCCTACACCCCACTCACGCCCGCCCTACAACCACACACTCCCCATCCCCCCACTCATACTGAATCTCCTCATTTAACCAACCCAACCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGGTTTAAAGATAAATTCCTCCCCATCGCGAAGCAGTCGATTTATTCTTCTGAGCATCGCGTTATGGCGGTTGTGTGCGGGAGACCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTATCCGATTCACCCTGTACATCTCACTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : ACTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //