Array 1 142893-141643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQC010000003.1 Pseudomonas aeruginosa strain PAL1.22 NODE_3_length_461675_cov_17.207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142892 29 100.0 32 ............................. TCCCAGAGGGATTGCATCCAGGCGAGAATGTC 142831 29 100.0 32 ............................. GGATCACGGTGGTCCCTTTGAGGCAATGGGAT 142770 29 100.0 32 ............................. GTGTTCGTGAAGCACGGGCCGTTCTTCCGGGA 142709 29 100.0 32 ............................. GCCCGCGGCGACACATTCGACATGATCTACGA 142648 29 100.0 32 ............................. CCAACGAAGCAACGACAGTGCTTCAGGTAATC 142587 29 100.0 32 ............................. CCATAGCTGAGGCACTTCACTGCAAATCAGTT 142526 29 100.0 32 ............................. GAGTTCCCGGAATTCGCGCATCTCAGGGACGG 142465 29 100.0 32 ............................. TCAGAAAGCTCGCGCCAGTTCTGCTCCCATGA 142404 29 100.0 32 ............................. GGTCTGAGTCCACATGCCGAGCAGTTCTTTCC 142343 29 96.6 32 ...........G................. ACTTGGGGAGCCACCCAGTCCTCCGGCGCCTG 142282 29 96.6 32 ...........G................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 142221 29 96.6 33 ...........G................. ACTTTATCAGTGGTGCCGCCGTTGCCTCCGGAA 142159 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 142098 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 142037 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 141976 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 141915 29 100.0 32 ............................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 141854 29 96.6 32 .....................T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 141793 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 141732 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 141671 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152829-152067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQC010000003.1 Pseudomonas aeruginosa strain PAL1.22 NODE_3_length_461675_cov_17.207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152828 29 100.0 33 ............................. CAGAACCAGCTCGCGCTCTTCGGAGATCAGCGG 152766 29 100.0 32 ............................. GGTAGTCGTTGTGCCGGAGCGGAAGCTTCTAA 152705 29 100.0 32 ............................. CTGCTCGCAGGCTATCTCACGTTCAGCGCGCT 152644 29 100.0 32 ............................. GATGGCAACCGGCGTTTGTCCGCGCTGAACTG 152583 29 100.0 32 ............................. TGTCTTGGTGACACGAGATTGCAGTGTCGCTA 152522 29 100.0 32 ............................. CACATCGGTCGACTGAAGCAGATGCAGAAGGC 152461 29 100.0 32 ............................. AGGCGCTGGTGGGCAAGGTCAGCGAGTGGGTA 152400 29 100.0 32 ............................. CTACGAGTTCAAGAGCAATGCGCCTGGGATCG 152339 29 100.0 32 ............................. TCAACAACGGTGATGTCGGCTTCGGGCCAGGG 152278 29 100.0 32 ............................. ATCCCTGATCGAGTTGAATCGCGGATCTTGGC 152217 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 152156 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 152095 28 79.3 0 A..........A..C.....-..A....T | C [152086] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCTAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //