Array 1 4395-3962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOV010000009.1 Bartonella sp. M0193 NODE_9_length_65824_cov_216.015546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4394 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 4328 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 4262 36 100.0 31 .................................... AAACAATACAACAAAATCGCACGGAAACTTA 4195 36 97.2 30 ..............A..................... CGGCCGCGCCACTCAAATGGCTGTTGTTGC 4129 36 100.0 30 .................................... AACTACGACGAACATGTCGCAGGTCTTTTT 4063 36 100.0 30 .................................... TGAGCGAATTTCAATTGCTTGCAAAGCATA 3997 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAGCATAAGAGGAACAAATCGACGAATAACATAATGAGGTAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCATTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 5245-5011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOV010000009.1 Bartonella sp. M0193 NODE_9_length_65824_cov_216.015546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5244 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 5178 36 100.0 30 .................................... ATTTGATTTGGTCGAGCGTTCGCAAGCCTA 5112 36 100.0 30 .................................... TCTTCCGGAGCGCCCATGAGTGCCGCATTA 5046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTAAGGAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 6297-5864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOV010000009.1 Bartonella sp. M0193 NODE_9_length_65824_cov_216.015546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6296 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 6230 36 75.0 29 C....A..C...T...G....A...G...A....T. TGGCCAAGTTCTGATCTCTGAAGTCGTTT G,T [6203,6206] 6163 36 100.0 30 .................................... GCTTTCGTGCTTTCGCGTTCATAACGGTTC 6097 36 100.0 29 .................................... TTGATTGTTCTGCAAATGACTCCCGTGTG 6032 36 100.0 30 .................................... AAAAGATAATAATATCAAAGCATTTTACGT 5966 36 100.0 31 .................................... AAAGAAAATATCGTGACGAAATTGTTAGATT 5899 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 94.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTTAAAAAACCGGAAGGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGCAAACAGCAATGAACTGGAAAAACTCTGATGCGTTTTTTTAAAATGCGCCTATGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAATCAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAACAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTGCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATGGCCGCGCTTGACCGCTTGTTCCAATCTGATAGACTATTAGCTGTTAGTTTATTGACACTTTTA # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 9717-9152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOV010000009.1 Bartonella sp. M0193 NODE_9_length_65824_cov_216.015546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9716 36 94.4 30 .C.T................................ GCACTGGAGTGCCACTGGTTTTTCCCCGAT 9650 36 97.2 30 ...................................T TCTTTTGCAACTTTGGGAGCAGTGTCAGCC 9584 36 100.0 31 .................................... CATCGGCAACGAATGGTCCGCGCCCATCGCA 9517 36 100.0 31 .................................... CGCAGCGATTAGCGAGCTTTCAGTCACAAAT 9450 36 100.0 29 .................................... CGACCATTCAACGTTTAATGAACAAAGCT 9385 36 100.0 30 .................................... TGACGGTAAGCTTGCGTTTATTAACGTCTT 9319 36 100.0 30 .................................... ATTGAACGCTCGGAGTGCAAAAGGTTTCGT 9253 36 100.0 30 .................................... CACTGGCGTTTGTCTGAACCGTTGGAGGCA 9187 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCTATTTCTGATACTTTTTATAGAATATATTTTGGACCTGTTGTATATAACTGGTCAACTTTGGTGGGCGGATTTGCCGTAATGGCTGCTGTAATCTATTTTTTTGCACAAGATGGGTTACTCTCTCGTTTAATTTCCAATAAGTTATTTGTTACATTAGGTGAAATAAGTTTTTCTATATATATGTGTCATCAGATAATACTGGTTTTTTTCAGTAGTCACAACGCCGTACTTTTTCGTTTTTCCGGCGGAATAAATTTTATATTATATTTTTTATATGTAATTCTTTTATCTTATGTAATATGGGTTTTTATAGAAACACCTATAAGAAAATTTATTGTAGGCGGGAAGATTGTTCATAGGTCAAATCTTATGAGCGAAACAATGAAAATTAATAGTGTTTTTAGCCTTTATTCTATTATCGCTTTGGTAGCGTTATTATCTATATCCTTCTACATACATTCGTTACTCAGGTAACTTGATGCGCTAATAGTTTCG # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTTGACGTGCCTTTCACGTTTTACTTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAAGTGATCTTACCAACACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTTTTGATAATATACCGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGACAGCGTGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 11595-11361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOV010000009.1 Bartonella sp. M0193 NODE_9_length_65824_cov_216.015546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11594 36 88.9 30 ACA..C.............................. CCGAAGCCCGAACGTTGTTCGAGAGCTTCA 11528 36 100.0 30 .................................... TGGCTGAAATCGCCTGTGAAATTTCGATCT 11462 36 100.0 30 .................................... ACGCCACCAAAACACTAAGGGCGGGCGCGT 11396 36 75.0 0 .A..T.....A...C...........G..G.G.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAGTCCACCGCACAACACTTATGAAACCGAAACATCTTCT # Right flank : GTCCGGAGACTTCATACATGGCTACCGATCGTTGCTATTTGACCAAATTTTTTGACCTGAAACAACGCTGTTTGCGGCTTCAAGTTTTTCTGGTTTTAGTGCTCTGTTGTCTCGCGATAACGAAGTCGAGTGGAATTACTCTTAACATCTTCAAGTCTTTCAAGGCTCATGACTCGACCTCGTTCTCTACAGATCCCGTCTTCACCAGCACTCTCACCGCAACGCTACCCGATTATCCATTCTCAGTCATAATATTCCCGTTTCACGGGATAGGAGTTATTTTACGATTTTTCCGAAGTTTCAACGCTGATGTTGTGAGTTCTCCGCATATGAGCGCAATAAAAGAGTAAAAGCCCCATCCAATCCAATTTATATTTTATACTAGAGCGGTAATTAATTATGAATACAAAGACTAAGCTTGATGCTTTAACGTCTCTACGATTTTTTGCTTGCTTAATGATTATTTTCCATCATTGTTCGACAACATTTTTCGGAGAGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //