Array 1 49130-46045 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMK01000031.1 Paenibacillus chibensis strain NBRC 15958 PCH05_CON01610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 49129 33 97.0 35 ................................C TCGGGCTTGGGGTCAGTTCCACCCTCGGCCCCTTC 49061 33 100.0 35 ................................. GATGAAGAAGTGAACGGGAAAAAAGTATCGCAAGT 48993 33 100.0 31 ................................. TAACCCCTCAACACAAAATTCAACCATTGCA 48929 33 100.0 33 ................................. TGAATCCAATTACGGACTATCCGGTCTTAGTGT 48863 33 100.0 32 ................................. ATGCAAGCAGCCCCGGATTCAATACATCAAAT 48798 33 100.0 33 ................................. CGTGGGTTACAGCTGAGAACGGCTCCGATTACG 48732 33 100.0 33 ................................. TTGCAAACGGAAAGAGGCTAACAGTTCCTTATG 48666 33 100.0 34 ................................. GGGCTTATGCTGACGGCAATGAGCGTCTGAGCTG 48599 33 100.0 34 ................................. CCCTGAAGATATTGTCTTTTTAGAAGAGGAGGCA 48532 33 97.0 33 ................................A TACCATGAGAAACAACGGCGAATACGAGCTATA 48466 33 97.0 32 ................................A AATAACATCATATGGGAGGAATTCAAATGTAC 48401 33 97.0 35 ................................C AGCCGATGCCATCATAACAAACCCGCCGTTTAAGC 48333 33 97.0 33 ................................G CCATGACGGACAATACCCGCGAACAAAAGGAAC 48267 33 97.0 33 ................................C CTGATCAGCCAAGACAAAAGGGTTTGGGAAGTT 48201 33 97.0 33 ................................A TCAAGACTTAGACAGCCGATCCGTTAACACCAA 48135 33 97.0 32 ................................A TTATTCTGGAATGAGACTTGGAACCAAATTCT 48070 33 100.0 32 ................................. CGATAAGAACCGTATCTCTCTCAAAGCGCTGA 48005 33 97.0 33 ................................A GTTCCTAAAGGAACTACAGAACGAACTAAACAG 47939 33 100.0 32 ................................. TGATCAGATGAAAGAAACCTTTAGACTTTTGA 47874 33 97.0 34 ................................A GGGAACGCTTATGCAGTTACGCTTAACCCTGCGC 47807 33 100.0 33 ................................. TGCCCGCCTATGGCTTATACGTTCGGTGGTATT 47741 33 100.0 35 ................................. AACAGCATTTATTAACTCGGAGATCGATAATCCTA 47673 33 100.0 36 ................................. CCGATCTTGGTGAATATCCGGTCCATGTCATCTAAA 47604 33 97.0 33 ................................G CAGTACGAACGAAATACGCAATTACACAGGATA 47538 33 100.0 32 ................................. CACTGTACCCTGCTGATATGGCAGCCTGTGTT 47473 33 97.0 32 ................................A TCAACTTCCAGCCATTCGGCCTTATAAGGATA 47408 33 100.0 34 ................................. CTATTACTTCCCATGCTGCGGTTATGTCGGTTGC 47341 33 100.0 32 ................................. ACGTTAACGGTCAGAGGCATTCGTTTTCAAGC 47276 33 97.0 33 ................................C AAGACGACGGTAGACGCGTTTAAGGCCATGGGA 47210 33 97.0 36 ................................C TATGTCGGACTGATCCAAGTCCTAATCGAAGTCCTG 47141 33 97.0 33 ................................A GGACTAGGTGAGGTAGGGAAATCAATACTATCC 47075 33 97.0 35 ................................A AATGGATCGTGATATTCATTTCTGGATATGGCGCA 47007 33 97.0 33 ................................A GGTCAAGAGCTTCGCGCTATGAAGTGGGATGAA 46941 33 100.0 35 ................................. TGCCTGTCTTGGATGGCGCGTGTGTTGACATCGTT 46873 33 97.0 35 ................................C GGAAGAGCGGTAAGGGTCATACCATCTCCGCTGAG 46805 33 97.0 32 ................................A GATTTCACGGGCTGCACATCATAACCAACAAC 46740 33 97.0 32 ................................C GGCTTGATTGATTGATATTATTTGCCGCCGAT 46675 33 100.0 35 ................................. TAAAGCAAGGATTTCACTTTGCCGCATGCCTGTTG 46607 33 97.0 32 ................................A AAGAAAGAGAATTGATGGTATCTGGGGGGCGT 46542 33 97.0 32 ................................C TCGAGTCTGCATAGAGAACAAAAATCGTAAAG 46477 33 100.0 33 ................................. TGATACAAAGGATGTGAATAATTGGCAATTAGG 46411 33 97.0 33 ................................A TGCATGCCGTGTGACATGATCCTGCAGTACGCT 46345 33 100.0 32 ................................. AAAGGTGATGCAATGATGGAACTGGCAGAAGG 46280 33 97.0 35 ................................A AAGGTTGCGGCATGAAGGTAAAGTGCGAGGAGCTA 46212 33 97.0 33 ................................A TGGTCGGAAAAGCCCTACGGTTTTTCATTCAGT 46146 33 97.0 36 ................................A CGATAAGTGAAGTTGCCGTAACATTAGCGATTTTTG 46077 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 47 33 98.3 33 GTCGCACCCTACGTGGGTGCGTGGATTGAAAGT # Left flank : TAGATGAATATCCTCCATTTCTTTGGAAGTAGGTGCGATCTATGCTGGTCTTAATTACGTATGATGTCAGTACGATGAGCAGTGAAGGACAGCGCAGACTCCGTAAAGTATCAAAAATTTGTCAAGATTATGGTCAACGTGTTCAGCATTCTGTTTTTGAATGCATTGTCGATGCTACCCAGTTTACAGTATTGAAAATGAAGCTCATGGATGTCATTGATCCAGAAGAGGATAGCCTTCGAATTTATCAGATGGGGAACAATTACAAAAATAAAGTTGAACATGTGGGTATTAAGCAATCTCTAGATTTGGAAGGGCCTCTTATTGTGTAGTGCGAATGTGAAGTGAACATGTTTTTCCAGGGCGATTCGCACCACGCAAATTCCATTTAACAATAAAAATCTCAAAAAAAGTAAATTTATTTGAGGCTAAAAATGTAATTATTGGATAATTAAGTTTAGATTAATGCTGATTGTGATGTTTTTTCCTTGAAAATCGGA # Right flank : CGTATTCCGGGACCTGAAAAATCACCCCTTTTTTCATTCATGAGGATTGAAAAGGGGGCTTTTTGCGTTGTCTTCTCTCGTTATGTGGCACGGTCTCATTCCTCTGCAAAGTTTGGATTTTTGTAACAAAAAGGAATACAAGCCATCTCCATACACTAATTATTTTCTCGATCATATCCGATATGTTTTATGTAAACTATTTTCTGAAAATCCCTAGAGAGACAGGTGCATCTTGCCAAAAGGAGAGGAGACTATGTTTAAAAGGGTTGAAAACGAACTGGAGCTGGCGATGTTTAACGGAATCTGGACAACGGTCTGGCTGGAAAAAGGCTTCGAGCTTGAATTCTCCGATGAGATCCTGGAGAGATACGTGGTCGTGACGGATGAAGGGCATTATGTCGGATCGGCGGAAATCAAGCCATACTGCTTCGACAGCTCGATCAACGAGACCGCAGCCTTTGATCAGCATCCGGTCATTCGGCAGGCGGAAGGGGCTGTAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGTGGGTGCGTGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 58002-57433 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMK01000031.1 Paenibacillus chibensis strain NBRC 15958 PCH05_CON01610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 58001 33 97.0 33 ................................C TTCATGCTGCTGCGACCATAGTCAGGATCAACC 57935 33 100.0 33 ................................. ATCGACACACACGCAAAAGGATTACCCCGTGTA 57869 33 97.0 32 ................................T TAGGGCAGCAACCCGAATAAAATCCAAATTAA 57804 33 100.0 36 ................................. TAAAATGCCGCCCGGGCCGAACAGAGGGCGCGAGAG 57735 33 100.0 38 ................................. AATCCACTCACGATCAATTCGAACACCGGCCGCGCCCT 57664 33 97.0 33 ................................C CACTCCTTTAGATTGATGTGATGATGGATGTAC 57598 33 100.0 33 ................................. CTCCCATCAGCATCGATCCGAAAATGGTGGACA 57532 33 97.0 34 ................................G ATACATCGACGGCCATGCTAGGTAAATGGGCAAA 57465 33 93.9 0 .......................A........T | ========== ====== ====== ====== ================================= ====================================== ================== 9 33 98.0 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAAGA # Left flank : GCTCTCGGGACCGGTTCGACGCCGGTACGGGAATGCTCGCTTTTACACAGCCGATCCATGAAGGATTTATCGAGAGAAGAGCGGATCTTCGCAGTGGAAAAGCGCGCACGGCCCTATACGGCCGATTGTCCGGCGCATATTTGGGGCATGTATTCCATGACGGCCCGAAACCGGGAGTTTTGCATTACCAGGTGAACTCGGCAGCGGTGCGGTTCGTGCCGAAGGAGAAGGTGGAGCGCGAGAGGCTATGGGACGTATTTGACCTGTTTGATAAGGTATGATAAGTCCTAGTTTATTGAGTTTGTGGTATAATTTAGGTAGTTATTGTTTCGTACATTTTGGTGCGAATGTTAAGTGCACATAGAAAAGCAGGGAGATTCGCACCAATAAATATCCAATTAATTTGATTATTTTACATTAAAAGGGATGTCATTCTCTTTTTTGGAGTTGGTTTATTATAGTTTTAACCGTTTTTCTGGATGTTTATATGAGAAAACGGA # Right flank : GCTCGATCGGAAGTAGCGGGTCGTAGAAGTACAGTTGCCTCCTAGCGCAGTGGCCTTTTTAATTGTTGTCAAATCGTACAAATTTCACATTTTTTTGTTCTATATTGTGGATTTTTTGGAGGATATTGATTAACTATATCGAAATTATGATGGGTATATAGAACTATTCTTGCCTTTTAAGTATCAGAAGGGGGAGTTAGATGACCTATATCGCCCATATTCGCAAAAGTGACGATAAACAGCAGACTGTCGAAGAGCATCTGCTGGGCGTAAAAGATCTAGCCGAAGAATTTGGTTATAGCCTAAATATTAAGCACATTACGGGACTGGCAGGTATTCTCCATGATATGGGAAAGTATTCGAATGCATTTAGGGAATACATCCTGGAGGCCGTCCGAAATCCTGATTCACCACCCAAGAGAGGAAGCGTGGATCACTCAACCGCTGGTGGACGCTTGCTTTATAACTTATTTCATACGAGCAAAATAGACCCGGCCAAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //