Array 1 53884-54931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQH010000021.1 Pseudomonas aeruginosa strain PAL1.15 NODE_21_length_108046_cov_16.6828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53884 28 100.0 32 ............................ AGCCCCACGTTGACCAGTGCCGGAATCGACTG 53944 28 100.0 32 ............................ TGTAGCGGCCCGTCGCCAGGCCATCCTGGATG 54004 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 54064 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 54124 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 54184 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 54244 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 54304 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 54364 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 54424 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 54484 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 54544 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 54604 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 54664 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 54724 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 54784 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 54844 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 54904 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66305-63456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQH010000021.1 Pseudomonas aeruginosa strain PAL1.15 NODE_21_length_108046_cov_16.6828, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66304 28 100.0 32 ............................ AAGCTCCTCAGGAGGAATAAGGCCTTCGCTTT 66244 28 100.0 32 ............................ TCCAGACCTACGTTGTTATCGACCCAGTAAGC 66184 28 100.0 32 ............................ AAATCCCGGAGGGCGAAGCGAATGCCAAATTA 66124 28 100.0 32 ............................ TGCCGGGTTCCCCAACGCAGGCCCGATCCACC 66064 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCGACTACTCG 66004 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 65944 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 65883 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 65823 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 65763 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 65703 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 65643 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 65583 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 65523 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 65463 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 65403 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 65343 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 65283 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 65223 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 65163 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 65103 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 65043 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 64983 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 64923 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 64863 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 64803 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 64743 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 64683 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 64623 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 64563 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 64503 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 64443 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 64383 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 64323 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 64263 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 64203 28 100.0 32 ............................ AGAATGTACTGCCGAGCGCCGGCCGCCAGTTG 64143 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 64083 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 64023 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 63963 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 63903 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 63843 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 63783 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 63723 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 63663 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 63603 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 63543 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 63483 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //