Array 1 935-543 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000243.1 Streptomyces sp. SA3_actG contig00145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 934 28 86.7 29 --T.C......................... GCGAGGGCCTGGGTGAAGAGCTCCTGCTT GT [906] 875 30 96.7 29 .............................C GACAACCACCTGGCCGACGCGCTGGCCGC 816 30 100.0 31 .............................. CCCAGCCCGGAAGTGCTCGCACGCATTGCCG 755 30 100.0 31 .............................. AGCACGCGCCGAGCGCTGCCGCCCGCGCGTA 694 30 93.3 31 .........................G..T. TGCCGCTTTTCGCGGCGGCGGGCGCAGCGAA 633 30 93.3 31 ...........A....T............. CCGAGGGCATCCAGCAGTGGGCAACGCGCCT 572 30 96.7 0 .......T...................... | ========== ====== ====== ====== ============================== =============================== ================== 7 30 95.2 30 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : | # Right flank : CGTCGTCAACGGCGCGACCCGGGGGCTGCTTCCTGCGTGCGCAGATGTAGTCCCGCCCCAGCGGAGGCGTGGTCACCAACGGCGAGCGCTCCCGGTACCTGACGGCTCCCCTCCCGCCCCATCAATCCCTCCCGCCCCCCTACCCTCCCCCCTCGCCTCCTGCTAGCCTCCCTCTCGCCCGGCCCAACTGGTCCTACCAGTCGGACCGCCGAACCATCCGCCCCGAGGAAGCCCCCGCATCCGCCCACACCCCCGTCCTCCCCCGCCCCAGAGAGGTGGCACAACGATGTCCACCCCCCGGCCCCCGGTCGGCCGCCCCACAAGCCACCAGCCCCCGACCGGCAACCCTGCCAACCCTCCAGGCCCCGAGGCCCCGGCCTCCCGCCCGGCAAGCAGCACGCCCGCGCGCCCCGAACCCCCAGCCCCCCACCCCGCACGCAACGCACCCCCCACCCCGCCCCCCTGCACGCACCGCCCCCCGCTCGACGAGCCCGCATCCC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 302-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000125.1 Streptomyces sp. SA3_actG contig00247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 301 30 96.7 31 .............................A CGGCAGAGAACCGCTGCCTCGACTTCGTCAT 240 30 96.7 31 .............................G TGCGCACGCTCTTGGTGATCTGTGTGCGGAA 179 30 96.7 31 .............................C AGCGTCGGACGCGCCGACTCCGCGACCCGGT 118 30 100.0 31 .............................. CGACGCCGCCTGAGCCTGCACATCAATCACT 57 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 98.0 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCT # Left flank : ACGGTACGGGGGGCGCGGACGGGGCTCTGCGAGGCGCGCGGCGGGGCCCACCGACCCCCCGTACCCCGGCCCCTGCCCCACCGTGCCCCCGAGGATGCCCACCGAGCGCCCCCTGTGCCGGGATTCCGGGGCGGGGGAGGGGGGAGTGGCGCGGTGGCGGTGGCGGTGGGGATCACCGTACGGGGAATGCGGGGGCGCGTCGTGGGGCCGAGGGTTCCGGCGCCTCGGGGTGCGATCCGCTGCGTGGCGCGCGTCGTGGGGCCGAGGGTATCGGCGCCCCGGGGTGCGATCCGCTGCGTGGCGGCCCCGGGGGCGAGCCGGCTGCGGGCGGGGTGGCCGTGTGGGGGCGGGCGTGGATGGGCGTGGTCACGCGGGGGCGGGCGTTAGGCTGCGGAAGGTCCGAAGAGCTCGGGCGCCGAACCGTCTTGTCCGAAAAGCCGGACTCTCCACTTCTTGCTGAATCGACGCCATCTCGAAGCCAAAAGGGCTGCTCACGCAGA # Right flank : TCCACCCCCGAGTCCTCAGCCACCCACA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19845-19572 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000021.1 Streptomyces sp. SA3_actG contig00299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19844 29 100.0 32 ............................. CTGTCAAAGGTCCGCTCGCACAAGCACACCGT 19783 29 100.0 32 ............................. GAACGTAGCGCCGAACTTCGTCGTTCCATTCG 19722 29 100.0 32 ............................. GACTACACGGCCCTTTTCGCAGAGGAGTGCAG 19661 29 96.6 32 ................T............ CTCATCTACGCGGCGGGCACCACGGTGCTCCC 19600 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 ATGGTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : GGCGGCGTGTTGAGGGCGCGGCGGATCGCGGGCACCGTCGGGTGCTCGGTCCCCGCCGCCGTGGCGAGGTCGAGGGAAGGGCCGACGAGGTCGGCCACGTTGTCGAGGCCCAGCTCGCGCGCGAGCGCGGTGAGCATGGTCAGGGAGTCGATCGAGATGACACCCCGCTCGACTTTGCTGAGCCAGTCCTCGGAGCGGCCGACGAGCCCGGCGACGGCAGCTTGTGTTTTCCCGGTGCGGGAGCGGTAGTACCTGATCCGCTCCCCGGTGGTCATGCTGACGGGATTGATCATGGCGGTCCCCTTGATGGGTGAGAGCACTCAGTCCCAGAGTACGGCTGACGGGGTGCCACAAGGCGGGCATACTGGAGAGCGCCCCCGCCGGGAGCACTCATTGGCCCTCGTCGTCTCATCGCGACGAGGGCCGCCCCAGTGGTCGGGGCATCTGCTGAAGTTGCTGAAATCTGGGTGCCCGGACAGTAGCCTTCCAGGTCACGAAGT # Right flank : TGGTCCCTGACACGACGAAGCGCCCCCTCCCCGCGCGTGGCGGGGAGGGGGCGGGTCAGCCGCGGATCAAGTCCGCGTCGTCGGGGTCGGGCTCCGGGACGGCGGTTCCGGTGCTGCGGAGCGCGGCCTGGAGGCGGAGCACGTACCGGCGCAGCGCGCCGATGGTGCGGTCCTTGACGGCTCGGCTCAAGCTGGCGCCCCGTTCTCCCGTGCCCGTGCTCGATCGGCTCCTCGTCGCCCACGCTGCGAAAATCTCCCAGAATTCTCTCCCAAGGCACGTCTCGGGCACCTGATCAGTCAGGCAAATATGCGCCCTGAGCTGGCACTTTGGAAGTAGCCGAGGAGCGATGTACTACAACGGCTACGTCTACTCGAACGACATCGAGAAGGGCTTCGACGTCCTCAAGATCGACGACCGCAGGACCGATCCCGCCAAGCGGGTCAAGGTCGGCGAACTGAACGTCCAGACCCAGCCGGACTACTTCGACTGAACCCCCGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57670-58319 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000025.1 Streptomyces sp. SA3_actG contig00054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 57670 30 100.0 31 .............................. CATCCTCAGCCTCAAGCCCACCGACGCGCCG 57731 30 100.0 31 .............................. CGCCGTACGGCCTGACGGTGTTGGACCGTGA 57792 30 96.7 31 .............................C TGACCCTCACCGGCGCGACCCGCGCGGGCGG 57853 30 100.0 31 .............................. CCACGCCGACGAGGGCCTGAATCACCGCCCG 57914 30 100.0 31 .............................. GAAACCGGACGACGTGGTAACTGCCGTCGTT 57975 30 96.7 32 .............................C TCGCCGACAGCGACGAGCTGGTGCTGTTCTTC C,G [57984,57997] 58039 30 96.7 31 .............................C AGGCCGTCCCCCCGGCCTACACCCGCTGGCT G [58060] 58101 30 93.3 32 ............................TC CGGCGAGGCGCGCGGCAACGTCCTTGCGGAAC 58163 30 100.0 31 .............................. CGGCGGCAGAGCTGGTCTCCGTGCTCCGCGC 58224 30 93.3 36 ............................GC GGAGATGTACAGGGAACTCGTACGGCTCGCCAGGGA 58290 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 97.6 32 CTGCTCCCCGCGCGTGCGGGGATGGCCCCG # Left flank : GCCATGGAGGGGGCCGATCCGGCGCGAGCCGCGCTGCTCGCCGTGTGGCACGACTCGCAGGAGTCGCGGACCGGCGACGTGAACTACCTCGGCCGGAAGTACGCGGACCGGGCCGACCCGGAGGCCGTCACGGCGGACCAAGTGGCGGGGCTGCCGGAAGCGGTGGCCGAGAGCGTGCGGGGTGTGGTCGCGGAGTTCGAAGGGCAGGGATCGGCAGAGGCTGTGTGCGCCAGGGATGCCGACAAGCTGGAGTGCCTCGTGCAGGGCGTCGAGTACCGGGCGCGGGGCTACGCGGACGCGCAACGCTGGATCGACAACTCGTACGGGCGCCTCACGACGGCCTCGGGGCGAGCGCTCGCCGACGCGGTGCTGCGGACGGGGTCGCTGGACTGGTTGCGGGAGGCGGTGGGGGAGGGGTGAGGGAAAAGTCGTAATTGCCGGAGTCAGCGCTTCTTGCGGAAACCCCACCGGGCGATAGCCAAACTCGCTGGTCAACGAGA # Right flank : CGGGGGCACCCCGTCGAGGTGCACCCTGATGTTTGCCCCCCCCGCGGCGCCCCGCCCCCTCCCCCATCACCCCTGTTTACCCGGCCACCCGCCCCGCTACTGTTCCCTCACACCGCGCCCGACCCCACGGGCGCCGCACAGCACGGGGGAACCATGATCGAGGCCATCGGTGTCGGGGGACAGGTGTCCTTCGACGGGCAGTACGTGACCATCACTCGCAAGGGCTTCCTCGCGCGCACCACGGTCGGCAAGGGGGAGAAGCGGATTCCGCTCTCGCAGATCTCGGCCATCCAGTGGAAGCGTCCCGGGCCGCTCGTCAACGGGTTCGTCCAGTTCACCGTGCCCGGCGGCGTCGAGGCGCGGTCCAGCTTCGGCAGCCAGACGGCGAGCGCCTCGCGCGACGAGAACAGCGTCACGTTCGACAGGAAGCGCATTCCCGAGTTCGAGGCGCTCCGCGAGGCTGTCGAGGATGCCATCGCCGCCCTGCGCCAGCCCGCACC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114547-114334 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000006.1 Streptomyces sp. SA3_actG contig00308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 114546 29 100.0 32 ............................. ATGGCCGCCGCTTTCGACCGTCACTTCGTCCA 114485 29 100.0 34 ............................. CCAGTCACACCCCACCCCGAAGAGCAGCCAGCAG 114422 29 96.6 31 .............A............... CGCTACGTCCGCGACGCCTCCCGAGCGTCGG 114362 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================== ================== 4 29 98.3 33 GTCCGCTCCGTACGCACGGAGGTGAGCCG # Left flank : TTTG # Right flank : AGGTCAAGCCGGCCGCGCCGCATCGCGTCCATGAGGGCTGCGGCAGCTTCGCCGGTGTTGGGCATCTGCGGCTCCTCGGTTCACGGGTTCTGGGTGGCGGTGCGTTCCGTCACTCTTCTGGTCCGGCCAGCTCCACCTCGTCCTGTCGTAGTTCGCGGGCCATCCGGGTTTCGGCGAGCGTCGCGTAGTGCTCGGACAGTTCGATGCCGACGAAGCCGCGTCCTTCGCGCAGGGCGGCGACGCCGGTCGTGCCGCTGCCGGTGAAGGGGTCGAGGACGACGCCGTCTTCGGGGCAGGCGCGGACGAGGGTGCGCATGACGTCGATGGGCTTCTGGGTGATGTGGATGCGGTCCTTGCGGGGCTGGGAGGCGGTGTAGTCGCCGGGGAGGTAGAGGTCGCGGGTGGTGTCGAGGCTGCCTTTGACGCCCCAGACGATGAACTCGCTGGACTGCTTGAAGCCGCCGCGCCTCGGGCGGCTGGCCGGCTTGATCCACGGCATC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGTACGCACGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGTACGCACGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42604-41964 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000011.1 Streptomyces sp. SA3_actG contig00271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42603 28 100.0 33 ............................ CGCGCGCAGGTCCGGGGCGACGGGCACCGTGAG 42542 28 100.0 33 ............................ CTGCGCATCGGCCTCGCCTCCGAGGGCCGCAAC 42481 28 100.0 33 ............................ CGACCAGCCGCTTCGCGGCCCGACGAATGCGCC 42420 28 100.0 33 ............................ CGGGCCGAGGCCCGCGCCGAGCGGTTCGGCGAG 42359 28 100.0 33 ............................ CAGCGGGGTCCGGTGGGCGCCGGGGTCGCCGTA 42298 28 100.0 33 ............................ CTTCACGGACTACATGAGCATCCTGGCCGGGCT 42237 28 100.0 33 ............................ CGCCCCGTCCGCGTCCAGCTTCGGCGCCCAGGC 42176 28 100.0 33 ............................ CGGCTGGCACCCCCACATTCACGCGATCGTGTT 42115 28 100.0 33 ............................ CGTGTGGGCGGGAGCCCTTGTCCCCCACGGCGA 42054 28 100.0 33 ............................ CGAGGCGACCTGGTGCAGCTCACGCACGCCGTC 41993 28 85.7 0 .........C...C......A...C... | C,T [41981,41991] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : ACTCCGAACAGGGCTACGCCTTCCGCACCCACGACCACAAGTGGCATCCGGTCGACCATGAGGGCCTGACCCTCATCTTCCGCCCCTCGGGCCGCTCCACGCCCCCTCCCGCGTCGGCTTCCAAGGGATGGAGCAAAGCCTCCAAGCGCCGTCGATTCGGCAACAAGCCGTAACTGACACAACCGATCGCGGCTCTTCGCCACTGGCCGGAGGCCCGATGCATCTGCGCGGCGGCGCCGGATCGCATCGGAGCACCTGCGCGCCGCAACGGCCCGCGTATGACGCCTGGCGTCACGCCCAAGCCGGGAGGAACCGAACCGAGCCATCGGTATCGGTGAGCGGAGCGGAGCGCACCGGGCAGGTGGCTCGACGCGAGTGCCTCGCGTCCGGCCGGTGGAGACGCTCCGGGACCCCGAGAGCCCCGATTATTCTATATGTCCGTTTCTCTCATCCTTGCTCCACGAGGCACTGCACCTTGATAAAAGCACAGCTCACAAAGA # Right flank : CGTCATCACCGTGACCGCGAGCGCGGACCGTCTGTTCCCCTGAAGATGGTCCCCCCGCCGTTGCCAACCTTGGCGCGGGGCCTTGGCCGGCTCTGCTCGGCGGTCCGTGAGGCCCTCTGTGGCAGGCCAACAGTACGCCGTCTCGTCTCTGAGAAGCCCGGACAACAAGGTCCCAGGCCATCGAACTGGGGCTTTCGCATGGACCGGGCGACGAGACTCGAACTCGCCCTCTGGACATGGAATCACCCGGCGCCGGCTGTCCCGCGCTCCTGAGCTGCGCCGACGAGCCGCCACGTCCGCTCAAACGGCTGTGGGCGACGCCGTTGATGTCCGCTGTTCGCTGCCCCTACTGACAGTTGTTGTACGCCGCCCCGGCAGTGCGCGCGAGGAGGAGGCTGTCTTGGCGCGGTCGCTATCCGACGGCCGAATGCGTTCAGCCCGTCAGGTGAAGGCTAGACCGCGAAATGCGTTGCGGACGTCAGCCAGCGGCTGCCGGTCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4127-4339 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000203.1 Streptomyces sp. SA3_actG contig00262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4127 30 100.0 31 .............................. CCGGGTTATGCCAGACCGTCTCGATGCGGGA 4188 30 100.0 31 .............................. ACGACTACGCCGAGGCCGCCGAGAAGTTGAG 4249 30 96.7 31 .............................G CCGAGGACTGCCCCGCCTGCGCCGGAACGAA 4310 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 99.2 31 CCGCTCCCCGCGCGTGCGGGGATGGACCCT # Left flank : ATCGCGGTCATGCGGGCCGCCGTCGTCGCCCTGGAGTGCGCGGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTCGAGTTCCACGAGGCCATCGCCGTCGCGGCCGGAAATCCCGTACTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGCTCGAATTCGGACCCGAGCATCGCCGAGCCGGGCGTCCCGCACCACCCGGAGATCTTCGAGGCCATCGAGCGCCGCGACGCGGAGCTGGCGGTCGAACGGATGCGGGCGCACCTGCGGTTGGGACTGCGGACGTACGGGCGGGACCTGGACGTGCAGGTGGATGTGATGGCGAAGCAGCACATTGAGATGTTGTTGGGGGAGGGGCGGGGGTGAGGGGGGACGGAGGTCGGGCCGCCATGGGTTGTATGCCGGATGTTGTAGATATGCCGGAATTCGCAATTGTTGCGCGAACGGCTCCGGGGCGGGGGTAAACCCCCAGGTCGGAAAGA # Right flank : GCCGCGGGCGGAGGGGGCCAGTGACCACGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11794-11944 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000155.1 Streptomyces sp. SA3_actG contig00062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11794 29 100.0 32 ............................. CGTTTGCAGGGCGACGCCCCGGCGGGCGGCGA 11855 29 100.0 32 ............................. ATGGCCCCCCTCTCGATGGAGATGGTGCGGGA 11916 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTACGGCCCGCGCGCGCAGGGGATGACCG # Left flank : CCGGCCGGAAAGTACGGCAGAAGGCCGGCCTCAACAGGGCGATCCTCGACACGGCCATGGCGGAGACCCGCCGCCAACTCACCTACAAGACTTCCTGGTACGGCTCTCAGCTCGCGGTCCTCGACCGCTGGTGGCCGTCCAGCAAGACCTGCTCCGACTGCGGATGGCGAGACTCAAGCCTCACGCTGAGCGAGCGGGTGTTCCACTGCGCTGTGTGCGGCCTGAAACTGGACCGCGACCTCAACGCGGCCCGCAACATCGAACGGCACACCGCGGCACAACCCACGCCGCAGCAAGTCGCCTCCGGTAAGAAGGGGGAGACTCAAAACGCCCGTGGAGAGCCTGTAAGACTTCCCCGCCCCCGGGCGGGGAAGCAGGGCCCAGCGAAACGGGAAGACGCCCGGCTCAGCCAGGCGCCACCTCGGCGGGGCAACCCGCCGACATCCCCGCAAGCGCGCAAAGAGAAAGCAAAGCCATCCTGAACGTGCAGGTCAAAAAGG # Right flank : CTCCTCGGTCTCGAAGCGAAGCTCGGCAAGATGTACGGCCCGCGCGCGCAGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGGCCCGCGCGCGCAGGGGATGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGGCCCGGGCGCGCAGGGGGTGACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 926-1441 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADXA01000158.1 Streptomyces sp. SA3_actG contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 926 28 82.1 216 .C.A........CC..........T... GGGCCGCCGGGCGATCGAGTGGACCCGCTACCTGTCGGCCCTGCGCTGGTAGGGATCAGTCGCGCAGCCGAGCAGCTGTCGGGGGTTACGGTGTTGACGTGGAGGGTGAGAGCTGGTGGGGTCAGGCGGTTGTTTCTGTTCTGGGCTCAGCGGTCGGCCGGAAAGCGACTGAAGGAAAACTGGCAGACCGGCTGGTATGACTGCAGGTCAGCAAGT 1170 28 100.0 33 ............................ GCCCTGAGGCGGGCCTTCTTGATGACGAGGTGG 1231 28 100.0 33 ............................ GCAGGCGGGCGCCCGCCGCCTCCGCGCCGCCGT 1292 28 100.0 33 ............................ GGCCGCCAGGCGCGCGGAGAGGACCACGGCTGC 1353 28 100.0 33 ............................ TGCCTGGGTGTGCGATTTGGGCGGTTCGTCTGG 1414 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================================== ================== 6 28 97.0 70 GTCGGCCCCGCGAGCGCGGGGATCCTCC # Left flank : GACGCAGACCCAGTTCGCCGAGGATTCCGGGGGCAAGGGCTGGCACCGCATCACCGGGTCCATCCGGGGCAAGGTCCGCACCACCGCGAAGAACGACTCGACGTTCGGGCTGACCTGCAACAAGCGCCCGAAGAAGCAGCACCCTTACCGGCTGGAGGCGCGCGGATACGCCACGGCCGACGACGGGACCAAGGTCAAGGGGTACCTGGAGTACGGTAAGGACTCCAAGTGGAAGTGCCGCTGACAGGAGACCCGCCCATGAGCGGCTTCGGATACACCCCAGCCGACCCCGCCACGGGAGAGCCCGCCCGGTTCAACGGATGCATCCCCCTGCCGGGCAACGTCGAGCTCGTAGACGACATGAGCGACATTGCCCTCAAGGACCGCATGCACGGTTTCCTCTTCGACGACGAGGACGGCGCGCCGCAGGCGGCCTGAACCCAGCCGCAGGCCCGTGACCGGTAATCGGCTCGGGCTGCGCGACCCCACGGGTCCTCTCC # Right flank : CGCAGACTGATATCAGAGGGCGGAATGAGAGTACATGGGAGTTTTGTCGTCGCCTGAGCGTGTGGCGGTGGGGCATCCCGGCCGTTCGGTGGTCATTGGCATGTTGGGCTGGCCGCCGTGAGCGAGCGCGAGCCCTACAAGACCGACGTGAGCGACGAGCAGTGGGCGCTGGTCGAGCCGGTGATCACCGCGTGGAAGGCCGCGCATCCCTCGGTCAGCGGCCATCAGGGCCGATACGCGATGCGGGAGATCGTCAACGCACTGCTCTACCGGGGCCGGACCGGTTGCCAGTGGGACCTGCTCCCGCACGACTTTCCGCCGCCCGGCGCGGTGAAGTACTACTTCTACACCTGGCGTGACGACGGCATCGATCAGACCATTCACGACCTGCTGCGCTGGCAGGTGCGGGAAATAGCGCGTCGGAAGGCGGACCCGAGCCTGGTGGTGCTCGATACCCAGAGCGTGCACGCGGCGGCTGGAGTGCACGCGCAGACGACGGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATCCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //