Array 1 142998-143513 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHC01000002.1 Aerococcus urinae strain UMB1016 NODE_2_length_745560_cov_79.1097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142998 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 143059 28 100.0 33 ............................ TATATGGTGACGATGTATTAGTTTTCAGTAAAG 143120 28 100.0 33 ............................ CAGACCTGTCTAGCTTTAATTAGTGAGTTGATC 143181 28 100.0 33 ............................ CTATGAAACATGGAACGTTATGATGTGGATTTA 143242 28 100.0 33 ............................ TAAAATGCCTAGAAGTAAAGTTTTAAGAGATTT 143303 28 100.0 33 ............................ TAAAATGCCTAGAAGTAAAGTTTTAAGAGATTT 143364 28 100.0 33 ............................ TCGTCAATGTCGTTTGGCTCATCAGCAATAAAG 143425 28 100.0 33 ............................ CTGATGTATATAACAATGAAACCACAATTCCTA 143486 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : ATCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162026-162969 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHC01000002.1 Aerococcus urinae strain UMB1016 NODE_2_length_745560_cov_79.1097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162026 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 162087 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 162148 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 162209 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 162270 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 162331 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 162392 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 162453 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 162514 29 100.0 32 ............................. TCATCAAAAACTCTCTCTGACTTTTAAATTTT 162575 29 100.0 32 ............................. TTTGTTAACCTCAACAAAATTGGGCTTAGGCA 162636 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 162697 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 162758 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 162819 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 162880 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 162941 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : AATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAGTGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //