Array 1 6985603-6984841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6985602 29 100.0 32 ............................. CTGCCAGCACACCCACTGGACGCCCCCCGCCG 6985541 29 100.0 32 ............................. CATCCCCGCGCTGACCGCGGTTGTGGGTGGAC 6985480 29 100.0 32 ............................. GAGACACAGCTCGACCTCTTCCCCGGCGAGAC 6985419 29 100.0 32 ............................. CACGCCTCCACGCGGGCGCCGATCTCGTAGGC 6985358 29 100.0 32 ............................. GCGCCGTTGGCGTCCAGCAGCGTGAGGTCCAT 6985297 29 100.0 32 ............................. GCGCCGTTGGCGTCCAGCAGCGTGAGGTCCAT 6985236 29 100.0 32 ............................. CCACAGCGCCGTGGTGGTGCCTTGCACGCGCT 6985175 29 100.0 32 ............................. CGGGCCCTCGCCCGCGCCGGATCAGGGCAGGG 6985114 29 100.0 32 ............................. CGGGCCGCGTTCAACGCCGCCCAGGACCAGGT 6985053 29 100.0 33 ............................. GGGGCAGGCCGGGCTGCCGTTTGCGCGGCAGTC 6984991 29 100.0 32 ............................. AAGGTCCGGTGCGTGGACGTCGACCCGGTCAC 6984930 29 100.0 32 ............................. TCTGGGCACGAGCAACGTTCCTGTTCTCGCCC 6984869 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCATCAACTACGACGGCCCCGAGGACTACGGGGACGACCTCTGGTGACCGCCATCGTCCTCACCAACTGCCCCGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCGGGCGTCTTCGTGGGCAACCCCTCGGCACGGGTCCGCGACGCCCTCTGGGAAGAGGTCCAGCAGTACGCGGGTCAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAACAGGGCTTCACTTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCGAAAGCACCCACCACCGACCCCGCTCCCCGCAACAGCCCACCATCAGGCTGGAGCAGAGCCTCCAAACGCCGACGATTCGGTAGGGGCTGATGCACATCGAGCGACTTATATCCCATTTACCCGAATCGAAGAAGCTGCTCGAAAACAGCCTGCGGCCTCAGTAAACCCGCAGGTCATCCAGT # Right flank : GCCAGCGGCACGGACCCGCGGAACGCGAAGCACTGCTCCCCGCACCCCTGAGGGCTCCCCCGGCCAGAAGGCGCTGAAGCGAGCCTCGAACAGCTGGTGAGCCACCCCGTCGAGCCGCACAGCGCGAGCTCGGTATGCGCACAGGGTGCCGAACGCCGGCCTGCTCGGGTCCGCGCGAGGCTTCAGCAGCGGCCAGGTCCGCTTTTGCGCGGGATACGGCTTGCTGCGAGCACCTGAACGCAGCGCGCTCTACGCGGCCTGGTCCCAGCTGTCCGGGAGGGTGTCCTCGTCGGTCGGGTGCTGTGTGGCCTTCTCGCGGATGCGCAGGATGGCCCAGGCCGGGATGGACAGGCCGGTGAGGTACCAGGGCAGGGGCCACAGGGCGCCCCACCACGGCCCTTGCGGTGTCAGGAGCAGGTCGGTGGCGGCGGTGGCCATGCTGGCGGCGAGGCTCCAGCACAGCAGGCGTCCGGCCCGCTGCACGGCATGGGTGGTCGTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6995394-6996154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012382.1 Streptomyces ambofaciens ATCC 23877 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6995394 29 100.0 29 ............................. AGATCGGTCTCGCCCTGGTACAGGGTGAG 6995452 29 100.0 32 ............................. ACGCGTCGCACCAAGCAGGGCGCGGGCATGGG 6995513 29 100.0 32 ............................. CAATTGGCGGAAGAAAGGCCGCAGGTCAGGCC 6995574 29 100.0 32 ............................. AGAGTTGAGAACCGCATCGGCGTCCGACGGGT 6995635 29 100.0 32 ............................. GCCATCGACACGGTGTTCGGGTCCTGACACCA 6995696 29 100.0 32 ............................. GAAACTCCGGGGGCCCCGGAGAAACGTGGGAA 6995757 29 93.1 32 ...........................TG CCGTGTCCAGCCCCCACGTGTCCTCGTAGGCC 6995818 29 100.0 32 ............................. CGCGCCCCAGATCGAGCGGACGAGATCGGCGT 6995879 29 100.0 32 ............................. AGCTTGGGCCGGTTCATTCCGATGGTCAGGGC 6995940 29 100.0 32 ............................. TCGGAGTGGACCCAGGAAGCCGCTGATCTGCT 6996001 29 96.6 33 .................A........... AAGTGCACGGGCGGCAACACCGCGGCCGAGTAC 6996063 29 100.0 32 ............................. TCCGCGGTGCCGTCGGCGTTCACCGTCCAACC 6996124 29 93.1 0 ...........G.............G... | T,T [6996139,6996152] ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTGGCACGCGAACGCCGGTGTGGCCTTGCCGATGTCGTGCACACCGGCCAGCCATACGGCGAGGGCCCGCGCGTCCGGTTCCCCCTGCGGCAATATCTCGGCGATCAGCTTCCGCACGCCTTGGGGCAGCCACCGGTCCCACAACAGGCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCGTCACTGTCGAAGTCGTGCTTCGCCCAAACCGACCTAGCCGGCCCCCCAAGCCGACGTAACAGACCGGAACGGGCGTTCCCCCCATCCGTCATGAGTGATTGATACAGGTAAAGCCCGGCTTCACACGCCGAAACGAGAAAAGAGAACGGTCTGCCAGCAGGCGGCACCCTCAAGACGTAGGATGACCAGCTAATTTTCGACGCCTCTCGGACTCGGAAGTCGACGCATGTCCCATTTACCCGAATCAAGGAAAGTGCTCGGAAACCGTCCCCAGCGCCAATAAACTCGCAGGTCAAACAGT # Right flank : CGGCCCGGCAGAGGAGGCTATGCCGTTGACCCCCACCCCTTTAGGGTCTCGCTCGTTGTGGCGGCATCCCGCCGGGGCTTACATGGCGGGCCGGACCCCGGCCGACGGCATCGCTGTTGTGCGCATGGACAGGCTGGCGGGGAGGGGAAGGGGAAGCGGTTGCGGTCCGGGTTTCCGGCTGCCCCCGTCCGCGGGCGGGTCGCCGTACTGTCGCCGTCGCGGACGCGTGAGCAGACAGCACCGTCCGGTCGTGGTGGAGGGGGAGCAGCTGCTGCCGCGATCGGGTCCGGCCGTCGAGCTGTTCAGCCCCGTCCGCATCGCCGTGGTCGAGGGTCCGGCCTCGCCGCCGGCAGGGCTGGGGCTGACACCAGCAGCCCTCCTTCCGACGGCATCAGCGCGCCTCGCGAACCATTTCGTGAGGAACGGAGTGGACGGGTGGCCACGATGGTGAGCGGATGTACGTCCGTGACGCTGATGAGGTCGGTGGACCGCGGATCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //