Array 1 3827-2623 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQH01000017.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1547c x_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3826 30 100.0 36 .............................. TCCAAGCTGTAGCGTTTTTATCTTTTGCAGGTCGCA 3760 30 100.0 34 .............................. CAGAGCTAGAAAAAGAGTTAAATACCAAACTAAA 3696 30 100.0 36 .............................. AGAAAACTTGCCTGAATGGCTTGTTGAAAAAGTAGA 3630 30 100.0 35 .............................. GGTCTAGCTTGGCATTACAAAACTTATTCTAAAAA 3565 30 100.0 33 .............................. ACAATACTATGTCCGCCATCACTACTATATTCA 3502 30 100.0 36 .............................. TTTGTCAGAGGCTACAAGCTTAAGCGACGTCGCGAG 3436 30 100.0 35 .............................. CTGCCTAGCACTTTGTCGATGAGGATTAAACGGAA 3371 30 100.0 35 .............................. GTTTAGGCTTGATAGTAGAATACGTGCCTGACTGG 3306 30 100.0 36 .............................. CACTCATACTCATCATTTAAAATTTTGCAAAGAAAA 3240 30 100.0 35 .............................. AGTGTAATAGTTGAAAATATGGAAATGCTAGATAA 3175 30 100.0 37 .............................. GGTAAGGACAAGAGAGTAGCCAAAGACGTGATTACTT 3108 30 100.0 37 .............................. TTTTAAAGGCGGTATTTAAAGGGACGTTAGGCGATGA 3041 30 100.0 34 .............................. CCTATTGTAAATATCAGCGGTGGAGGATTTATTA 2977 30 100.0 34 .............................. GGTATCGAGTTTATCCGCGGTTTTGACAAAATCA 2913 30 100.0 36 .............................. GGGCTATGGATAGTAAAATGAATTCAGCTAAAAATA 2847 30 100.0 35 .............................. AAGCTACTTCAAAAAAGCGGAGCTATTAGCAATTT 2782 30 100.0 36 .............................. AAGCAAAGGGGTCATAATATAGCTTTGCTCATTTTC 2716 30 100.0 34 .............................. CAACACCTGTGATAGAATTTAGTGAATAGGATTT 2652 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : AGCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAGCCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAATAATATCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAGCAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : AGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTGAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //