Array 1 686169-684700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008943.1 Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 686168 28 100.0 33 ............................ TTTTGCGATTGCAAGTTCTTCAGGTACCACGGA 686107 28 100.0 32 ............................ AATGTGAGGTATCTATGGTCCACTCTCATGAC 686047 28 100.0 32 ............................ TTAACCCTCCCCACCCCCACTAATCCCCATAG 685987 28 100.0 32 ............................ GCACAGGTTGGCACCGCACAGGTCGGCACCGT 685927 28 100.0 32 ............................ TCTTCGATGCGAATGCGTTCCTGTTCGGCTTC 685867 28 100.0 32 ............................ CGTGAAGAAGCAGCGCATCGCGAATCCGTGCT 685807 28 100.0 32 ............................ TGCAACTTCTTTCTCGGGCTTATCAATAAAAC 685747 28 100.0 32 ............................ AATTAATAGTATACTTTAGTAAGTCGTCAACA 685687 28 100.0 32 ............................ TGCGTAGAAACCCATGGCGTACTTCTGCTTCG 685627 28 100.0 32 ............................ AAAGTTTACTGAGTTATAACCCGACGGTAGGT 685567 28 100.0 32 ............................ AAGAGGATTGTGGAGGCTGTAATGATCGATGC 685507 28 100.0 32 ............................ TTATTAGGGTTCATATTTCCGACATCCATTAA 685447 28 100.0 32 ............................ CGAAACGGATTCCATCCGGTAGGTTCCCCACT 685387 28 100.0 32 ............................ TCTAATGGTTCTTGATTCTCTAAATCGGGGCG 685327 28 100.0 32 ............................ ATTAGAAGTACCCGCATATTATCGCTGGCTGA 685267 28 100.0 32 ............................ TGCTCAAACGTACATGACAGTTCAAATACTGG 685207 28 100.0 32 ............................ GAATTAGAGACGAGGTTACTGGCTCTGTAATG 685147 28 100.0 32 ............................ ACTTGCCGCCATCATTGAATTGAATCAACAAT 685087 28 100.0 32 ............................ GGTTGAGGGTCGGAGACGAAAGAAAGAAACAG 685027 28 100.0 32 ............................ GTCACGCAGAACCTATCACAATGCGGAATGGG 684967 28 100.0 32 ............................ AGATTGATAAGCCTCGCGAACCAGCTCGCCAC 684907 28 100.0 32 ............................ GTTAAATTCGGCATTATCGAATCACCACCAAA 684847 28 100.0 32 ............................ GTCTTCATCAACGTGATAAATCACTTCAGCCT 684787 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 684727 27 89.3 0 .....................CC.-... | T [684702] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4535188-4535876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008943.1 Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4535188 28 100.0 32 ............................ CTACATTACGCGACGTCATCGAGGCTATCGGC 4535248 28 100.0 32 ............................ AATGATGTACGGCGCGGCGGATGAATCTGCAA 4535308 28 100.0 32 ............................ GCAATGGCTATTTAATCCTGTCTGTTCCGGTT 4535368 28 100.0 32 ............................ ATTGATGATATTCCAACGCTGAAAAAGGCCAA 4535428 28 100.0 32 ............................ GGGTAAGAACGGAGCAACATAAACCCGGCGAC 4535488 28 100.0 33 ............................ TCATCGATGATCAACAGGTCAGGGCCGGTATAA 4535549 28 100.0 32 ............................ TCTCTTAAACTAGTAGCCATAAACACTTTATC 4535609 28 100.0 32 ............................ GAGTGGGGCCACGTTTGACAGCATCATGGAAT 4535669 28 100.0 32 ............................ GAGTGTTAATGTGACGCCCAGCAATGCGACGC 4535729 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 4535789 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 4535849 27 85.7 0 ...................-A.A.C... | T [4535873] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //