Array 1 35-303 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIZ01000020.1 Shigella sp. FC1967 NODE_1018_length_318_cov_25.3014_ID_2035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 35 23 91.3 39 ......T..C............. GAACCTTGAGGTCACTTACGGCGAGCGCAACGGGTCTGC 97 23 100.0 39 ....................... TTAAAGCGAGTTTGTTTTTCCCTGTTCAATCTAGTCTGC 159 23 100.0 38 ....................... GATAATTGCCTTCACGGGGGAGGTAATGGCTGAGTCCG 220 23 87.0 38 ......ACC.............. TATCGTGCAGCGCTCCCATAGGTTTAATCTTTAGTCTG 281 23 73.9 0 ...T.TT.TC..T.......... | ========== ====== ====== ====== ======================= ======================================= ================== 5 23 90.4 39 CCCCGCGTGAGCGGGGGTTAAAG # Left flank : CGCCAGTGTGTCCAATGAGGCGCGCAGTTGTCTGC # Right flank : GATGAGCTGCTGGAC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCGTGAGCGGGGGTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2836-1845 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIZ01000705.1 Shigella sp. FC1967 NODE_286_length_4399_cov_6.88465_ID_571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2835 28 100.0 32 ............................ TTGTTCTGGTAAAAAAGGCGGTGTATCTCACT 2775 28 100.0 32 ............................ TGCAACAAGCGTTGTAAATTGGAATGGGTCAC 2715 28 100.0 32 ............................ CGTACCGTCAAAGTTATAAGAATCTTCTTTAT 2655 28 100.0 32 ............................ AATTTGCTGACCTTTATTGTCAATGCACAGAC 2595 28 100.0 32 ............................ TACAAACGTTATTAGTGGCTCGTACTGTTGCC 2535 28 100.0 33 ............................ AATATCGCCCCGTTCTTCCGCAACTTTTTGAAT 2474 28 100.0 32 ............................ TAGGTTATGAGGTTGTCGATATGGTTGACGTT 2414 28 100.0 32 ............................ TTAGTTAGCGTGTTCATGCTGGATATGTCTTA 2354 28 100.0 32 ............................ ATCTTAAACCGCGCTGAAAAGCTAATAGGTGA 2294 28 100.0 32 ............................ ACTATCGACAAAGACACACATATACAACATAT 2234 28 100.0 32 ............................ AAAAACAGACCCTTTTGACTCAATATCATTTA 2174 28 100.0 32 ............................ ATCAGTAGTCATGGTGTTTGTATCTAAGTTGG 2114 28 100.0 32 ............................ AAGCAAGCACAGACCGCATTCAACGCATTTAT 2054 28 100.0 32 ............................ GCTCATATGGAATGAGCAACGGATCATTACTG 1994 28 100.0 32 ............................ GCTCATATGGAATGAGCAACGGATCATTACTG 1934 28 96.4 32 .............T.............. TGATTCATTTGACAGAGAATTCTACTGATGAA 1874 28 82.1 0 .............T......AA....GC | AA [1849] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : AAGTCTATCCAACCAGTACCTGAATATACCACGTCAGTTTGTTATCTTCGTGAGCATATAAAAAGGTAAAGGTGCGTGTAGAAAAAAGAGATGTATAAGAAAGCTGTATTATGGGCTAAAAAAACCGGTGCAACTATCGAATCATGTTTATCTGAATTAGAAAAAAACACGACCTAAGCATAGTCAATTACCTTTTATTTGGATGGAGAGTCAGCGGACTAAACAACGAAATGGAGAGACACAAAAATTTTCCTTTGTTTATAAAGCAGATTTTTATAAGTTCGCCACAACAACAGCATTTTTAATTGTTATGGATTAAGTTTATCTCAATCTAAGCAAGAATTATTGTCAACAGTACCTTGTTTTTTGACCTTTGTTTTTCGCTCTTTAATAATGGAATGATAAATCAATAAGTTATAATAGTAGGTAAAATAAAGGGGTAAAACCCAAATTTATCTTTAGCCTATTGTTATAACTTGTTTTTTATGTTTTTATTTCTT # Right flank : AACGGCTTAGAATGCCATTGCTCTATTACTTTATCAGGTGCGCCGTCCTTTAAGATGGGAGGATATCAAATCCTACCAATACCCCAATACTTTCCACCATGCACTGCCAAGCGTGATCCAAATAATAAGATTAACCACACTCATCACAAATCCCGTTTTCCACCATTCGCCCAATGTCGCGTAGCCTGAACCGAAAATAATGGGGGCTGTACCTGTACCATAATGTGTTAATGACATCATCAATGAAGAAGAGAACGCTAAAATAAGGCCTAATAACATGGGAGGGGCGCCAAGGGCTAAACCCGCGGCATAGAACGCGGCAAACATTGCGGTAATATGAGCGGTAGTACTGGCAAAGAAATAGTGAGAATAAACATAAATGAGTACCAGTAATATCATGCCACTGACCCAACTTATTCCCATACTATCAATACTTGCTCCTACACTGAGTGACAACCACTTAATTAATCCTAGTTTTCCTAAGAAGGATGCCATCATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //