Array 1 12633-13527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFG01000026.1 Absiella sp. AM22-9 AM22-9.Scaf26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12633 33 100.0 34 ................................. AAGATTAAGTATATGGGTATGCACCAGGAGAGAG 12700 33 100.0 33 ................................. TCATCTGTAAGATATCTTATAAAGCTGTCTTGC 12766 33 97.0 34 ................................C CAATTTGATGTGCTATTGCGCAACTTTAAAGAAC 12833 33 97.0 34 ................................T CAAAAATCAATAGATCTCCATCGTTTATATTTGC 12900 33 100.0 32 ................................. CATCAAATTTTAGATTTATGGAACTTTTAGCA 12965 33 100.0 34 ................................. TCGATCCCACACGCATCATAAGCAGTTTCTATAG 13032 33 97.0 34 ................................T TTGTTTTACCAATCTTTTGATATACGCTGTCTGC 13099 33 97.0 36 ................................C CCTCACTTTCGTTTTCAAATTGATCAAAAACACCGT 13168 33 100.0 32 ................................. CTTTATCGTTACCGACAAATTTACGTCCTGGT 13233 33 97.0 33 ................................G TAGCTATCTGATTTTGATGCTACGAGATCTGTT 13299 33 97.0 32 ................................G TGCAATGTATTTTAGCTATATGTATCGTATGG 13364 33 100.0 33 ................................. TTGAAGATCTACGTGATACGATGGTTGATATGA 13430 33 90.9 34 ..........G.........A...........G ATGCAGATGTCAAAGTAACGATCCATGCAAACAG 13497 31 81.8 0 ..................A.A.--.....G.C. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 96.8 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Left flank : ATACGCGGTGATTTGGATGAGTATCCACCTTTTTTAGCAAGGTGATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGTAATCGATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGATGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATAATATGTAACATATTGAAAATAGTAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGTT # Right flank : ATCTAACAACGCCCGCTTATTTTGGCGATATGCTCGACTTTTTTCAGAACACCAATTTAAACACTGTACAAACTAATGAATTTATATCACATTTTTATAAACAATTTTATAAACGGCAGATAATACAAAATACTATGTCTAATGTCTTTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTAATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCGATTGAAAATGCACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 196032-195144 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFG01000001.1 Absiella sp. AM22-9 AM22-9.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 196031 32 75.0 35 .AAC...A.T.T......C.A........... ATGGACATCCAACAATAAAACCACAAGCCATTATA 195964 32 96.9 35 .......................T........ GAACAAATAATATCACTTTCATATAGTTTTCCATT 195897 32 96.9 34 .......................T........ TGATTTACAGCCATTCTTTGATAAAGCAATAGAA 195831 32 100.0 34 ................................ TGTTTTTTTTGATGTTCAGCATTTCCATTTTTTC 195765 32 100.0 33 ................................ GGTGTAAGAACTGTATTAAAAGATCTAGGACGA 195700 32 100.0 35 ................................ CAACTAGAGTTGTAGATTTTGATAAAGCAACAAAA 195633 32 100.0 34 ................................ AAAGAAGTACGAAAATCTGTTATGAAATTAAATT 195567 32 100.0 33 ................................ AAACTAGCAGATGTCTTTGGTGTAACTACTGAT 195502 32 100.0 34 ................................ ATTTTTGCTGTATAATATAAGTGAAGTGAGGTGA 195436 32 100.0 34 ................................ AGGTCAAGGGATTTATGAGAGGAAAAGGCAATAT 195370 32 100.0 33 ................................ ATTGTCTAACATCTTACCAACGTCTGCTCCGTT 195305 32 100.0 33 ................................ TTTCAATACTAAAATTTCGGGTATTTCCATCAA 195240 32 100.0 33 ................................ GGAGATAGTAAGGAAGTTGCACAGGCATTAGAA 195175 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 97.8 34 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : AGGTCATTGTATCCGCTATAAGAACAAGTATTTTATTCCTATAACGAAATCTGGTAGTAAAGCATATCTGAAAAAAGGTATGAATGTGATGGTGATCGAAGCATTTGATGGAAAGCTATATGCCAACATCCTAGATCATCTATTCGCTTTAGAAGAAATCCTAGAACGTGAGGCTACATCAAAGAACTTCGACACGCTTCCTATTGAGGTGAAACANNNNNNNNNNACGCTCCTATCGAGGTGAAACAGAAAAAGCCTTATATTCCCCCTATGTCACATCCTTGGAAACAGGCTTCTTATCTTGCTTATGTGGCAAAGCAAAAGCACCGTCAATCCGGTGCTAATGTTTAATTATTTTTAAGACATTTTCATTTTTGCTTGACATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAAGCTAAACTTTATTTTAATTATTATATGCACAAAGCTATCTACAAAAAAT # Right flank : CGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTTTCAACAATCTGTTCAATATTTCGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCTTTATGTCCAATACTTAAACGGATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 26343-25284 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFG01000006.1 Absiella sp. AM22-9 AM22-9.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 26342 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 26274 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 26205 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 26136 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 26068 34 100.0 35 .................................. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 25999 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 25932 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 25863 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 25793 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 25726 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 25658 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 25589 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 25521 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 25452 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 25385 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 25317 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 16 34 98.4 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : ATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 87670-86106 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFG01000006.1 Absiella sp. AM22-9 AM22-9.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 87669 33 100.0 32 ................................. ATTTGATCGATGAAATATCCACTAGTATTTAA 87604 33 97.0 34 ................................C ATCCTCATTGTACTTGTCATACTCATCATTAATC 87537 33 100.0 34 ................................. TCAAATGTTACTACTTCTCTTCCGCTCTCTTTAT 87470 33 100.0 32 ................................. CAGCAGAGTACGAAAGAGGAGTACATGTAAAG 87405 33 100.0 32 ................................. ACATCTGCATGAATTCCTTTTGATTTTACATA 87340 33 97.0 34 ................................A CGATACGATCATAGTCATGTTTGAAGTAATAGAA 87273 33 100.0 34 ................................. AGGTGGTATCGTTGAGGCTATCGGTACTGTGATT 87206 33 100.0 32 ................................. TTAATCTTTGTTTCATCCTGGTGCTTTAGCTC 87141 33 97.0 33 ................................G AGTTGATTATATGAAATTTAAACCATTGAATAT 87075 33 97.0 34 ................................A TTATGCTCAAAGTCATGTGATCGAAGAAACAGAA 87008 33 97.0 33 ................................G TCGTAGTAGTACAAGAACTTTGGCACATTGGTT 86942 33 100.0 35 ................................. GTTAGATGGTCATATGGCACTGGCACGCCTTCTAT 86874 33 97.0 32 ................................A GCACTGACTCTTTCCATAGCATCGATCGTACG 86809 33 100.0 34 ................................. CTGGTGCATGCTCTGGCAGGTTCCTCGTTCTTTG 86742 33 97.0 35 ................................C GTAAAATGTATTTATCTTAGTGGACAATGCCAGTG 86674 33 100.0 33 ................................. TTAAGAAAGTGATTCCGTCAGATATCGCTAAAA 86608 33 100.0 34 ................................. CGAAAAAAGTCATATGCCGAACGTCAATTGTCGA 86541 33 100.0 34 ................................. AGCAAAACATTTGATTATCCTAGTTTGCCTTTAT 86474 33 97.0 34 ................................A GTCATGGATAAAAGTCCTCAATGACGATCCTCAA 86407 33 100.0 35 ................................. CAAGAACTTGCTGATCAATTAGTCAAAGATGGTTG 86339 33 97.0 34 ................................A CTTTATGTTCTCCGATTGCATCATTGTTATAGCC 86272 33 97.0 34 ................................A CTGTAACCGGCACGAATGGCTGCCTGTGTGATGT 86205 33 100.0 34 ................................. TCCTTTCTGTGCAAATCACATTTATACCTCTACC 86138 33 84.8 0 ..........T........C..AT........G | ========== ====== ====== ====== ================================= =================================== ================== 24 33 98.1 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : GATACGTGGTGATTTGGATGAGTATCCTTCCTTCTTAGCGAGGTGATTTTATATGCCGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACGAGACTAAGAAAGTAGCAAAAGAATTTATGAATTATTAGCATAGATTGCGAAATTCTGTTTTTAAATGTTTTATGGGTAACGTAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATTATGACAGTTTAAGATTTTATTATTTAGGTAATCAATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGGATGATATGTAACATATTGAAAATAGCGATGTTAATTTTAAAAAATATTGTTTGAAAATTCGTTACATTGGTTTGAATTTAATACATTCTTGCT # Right flank : TACATTATGTGCTGCCTTTTAAAATTCTGTGCGTTTAGATTGATAAGAGTATTACAGTCTTTATCTAATATTTCTGTGAAAAGCAACTCCACTTGACATACTTATGATCTCATCTTCAGAAGAGGCTTTGTAATATATCATTTCTTTGAACGCTTATTGAAAAAAGTACTACTCTATTATAAATTATAAAATTGAGGCATCCTTGTGTATTATAGTTATATCACGCTTGCGTAATATGTTAGGTTTTAAAGCACATGATACTTCATACCAGCTGTAATCCATTCTTTTAAGATAATTAGATTGCTACTAAATTCAATATAAGTGTAAGCATATACCTTTGCATATTCTTTACAATTCATAAAATAACCATATCGCTCGTGAATATATAATAAAGGATTTCTAAGAAGTACTACTCACGCCGACAATAGTTGTCTTAAGCTGTATGGTCACTGTTCCAAGGGAAGGGATCGCCAATATTGTATAAATTAATGTATTACCTA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //