Array 1 35435-37206 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCY01000004.1 Providencia rettgeri strain GPAT470_S1 7_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35435 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 35495 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 35556 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 35617 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 35677 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 35738 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 35798 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 35858 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 35918 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 35978 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 36038 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 36098 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 36158 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 36219 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 36279 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 36339 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 36399 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 36459 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 36519 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 36579 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 36639 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 36699 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 36759 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 36819 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 36879 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 36939 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 36999 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 37059 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 37119 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 37179 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45844-46834 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCY01000004.1 Providencia rettgeri strain GPAT470_S1 7_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45844 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 45904 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 45965 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 46025 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 46085 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 46145 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 46205 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 46265 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 46325 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 46385 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 46446 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 46506 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 46566 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 46626 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 46686 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 46746 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 46806 28 89.3 0 ...T......A.........T....... | G [46832] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //