Array 1 56811-57265 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDO01000013.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051004 CFSAN051004_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56811 29 100.0 32 ............................. GGCGCTATTACCGGCGAATTAGCCGCCGGGGG 56872 29 96.6 32 .G........................... GTTTCGGGTGGCAACCGGGAACAGAGTTCGGG 56933 29 100.0 32 ............................. CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 56994 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 57055 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 57116 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 57177 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 57238 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73409-74658 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDO01000013.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051004 CFSAN051004_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73409 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 73470 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 73531 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 73592 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 73653 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 73714 29 100.0 32 ............................. TTTTCTTCGCTTCGTTAGGCGTTACTGCTGAT 73775 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 73836 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 73897 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 73958 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 74019 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 74080 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 74141 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 74202 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 74263 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 74324 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 74385 29 96.6 32 ..........T.................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 74446 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 74507 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 74568 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 74629 29 93.1 0 A...........T................ | A [74655] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //