Array 1 46474-46929 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKD01000028.1 Escherichia coli strain 679 BN4_679_1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46474 29 100.0 32 ............................. GCGGTTTTTTTATAACATTTGATTCACTTCAG 46535 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 46596 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 46657 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 46718 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 46779 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 46840 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 46901 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72477-74151 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKD01000028.1 Escherichia coli strain 679 BN4_679_1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72477 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 72538 29 100.0 32 ............................. CACCAGATCTGACATGGTGCGGTGATCGCGCA 72599 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 72660 29 100.0 32 ............................. TGTTTCGGCTGATTTGTTCGCCGCGTCAGTGC 72721 29 100.0 32 ............................. ACAGTTCCCCGCATTAGCGTGGATAATCCGTT 72782 29 100.0 32 ............................. CCCCTGATTAAAACCAATAGTCTCGTAATATT 72843 29 100.0 32 ............................. TAATATGCTCTATAAGTGCCTCTATCCGATCC 72904 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 72965 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 73026 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 73087 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 73148 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 73209 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 73270 29 100.0 32 ............................. CAAGTCGGGCGAAATGCAGGACACTTTATCCG 73331 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 73392 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 73453 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 73514 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 73575 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 73636 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 73697 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 73758 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 73819 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 73880 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 73941 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 74002 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 74062 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 74123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //