Array 1 507194-505679 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLN01000003.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 507193 33 100.0 35 ................................. CGTTGTCAGAAGCCGAGAGCATAAAGAGTTACTAC 507125 33 100.0 35 ................................. CTAGCTTGTCCGCAACGTTTTGTTGTGTCATTTCA 507057 33 100.0 33 ................................. GCAATCGAGGGAAAGCAACAGAGCACCTCGAAT 506991 33 100.0 35 ................................. CTGGTGTCTTGGCTGCATGCAATGGGTTCATCACG 506923 33 100.0 36 ................................. CGCTTTACACTGCATAGCCTTTGCTTTAATTTGTGG 506854 33 100.0 35 ................................. CAGTTTTTTCTACATGCAGTTTATTACTTGCTATA 506786 33 100.0 35 ................................. TAATTTAGCAGATTTAGGCAATTATCTCTGGAACA 506718 33 100.0 33 ................................. ATGGGCGTAATGATTTTTGCGCCGCTGTATTTA 506652 33 100.0 34 ................................. AAGCAATGCAGAAATCCATCAATAAGGGAGCGGT 506585 33 100.0 35 ................................. ACACCGTCAATGACATGGTCGGTATCGTATTTGCA 506517 33 100.0 35 ................................. GTCTTTAACAATTGATACAGCAGATGGAGTGTTGC 506449 33 100.0 33 ................................. AATGTTTGTGCCGCTGCGCTGGTCTCCAAGTAT 506383 33 100.0 34 ................................. AAAAAGTTATCCAAGTAAACAACAAATACCAATA 506316 33 100.0 36 ................................. ATTTCAAACTCTGCGTTGCCAAACGAGCTTAGTTTA 506247 33 100.0 33 ................................. TGTTTCCACCGGCGTGACCGCAAACTATACTCT 506181 33 100.0 35 ................................. CGCTTTTGAGAGTATCTGTTGCTTTTTTAGCATCG 506113 33 100.0 34 ................................. AAAAAATAATATCTCTGTTTGATGCAGATAGCAG 506046 33 100.0 35 ................................. ACAACGAGGTAGATGGCTCTAAAAAATACGCGGAA 505978 33 100.0 33 ................................. GATTTGGGACGAGCTGGACGCACAAGCACTTAC 505912 33 100.0 34 ................................. TGAACCGGAACACTTGAAATATCTTCAATTGGCA 505845 33 90.9 35 ..........AT.C................... TTGGGATGGTGTACTAGTAATGGAGGTAGAGCGTC 505777 33 100.0 33 ................................. TGTTTCCACCGGCGTGACCGCAAACTATACTCT 505711 33 90.9 0 .........................G..CC... | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 99.2 34 GTCGCCCCTCGCGAGAGGGGCGTGGATTGAAAT # Left flank : GTGATGAATGAAAATAAAACACTCGCCGATATTAAAATGCAGGGGATTGCGAACCTCACCCCAAAAGACATTCAAATAGCGATGGCAGAGGGAAAACGGTACAAGCTGATTGGCCGGGCGAAGCGAGAGGGGGAGGAGCTTCAATTGGTGGTGGCACCCGAAAAGTTAAGCGAAGAACATCCCTTCTACCGTGTAGACGGCAAAAATAAAGCGGTTAAATATGAGTCGGATACGCTGGGAGACCTTACGCTAATTGGTGGGGCCTCGGGCACTACGGCCGCCGCCGCTTCCATTCTGAGGGACATTGTGTCTATATACAGCCGTTAAGGGTGTACTTCTTGTGCGAACCTTAAGCGACCATAAAAAGTCTGGGGGATTCGCACACATAATTTGCATTGATTATGCAAGTGAAAGCTTGTAAATTACACACCGTTGCAATATAATTGGATATAATAGCTAAGCAAAATTCTTAGGAACAACTTAGGATTGTTTGTTTTGCA # Right flank : CAAGAAAGGCTGTCGCAAATTGCGGCAGCCTTTTTATAATCAATAACTTAATCGTAAGAACTTAAGTAGGGATGTTGCTGCTAGAATAAAAGAAAAAACCGCAGAGAATGCAGTACCTGCAATATCCCAATCAAACTTTGGCAATGGCTCTTGCCGTATTTCGCGTATGGGCTCAATTTCCTTTTCTCGCCGCTCACGCAGCCTTTGAGCGATGCTATACACAAGGCCGCACATGGTTAAGAAAAAAGCAATGGCAAACAAAAGGTGAAACCAGTGTGCAGCAAGCTCCTGTGGGAAAATATAATCCTTTATAATACCAAGCAGCACCACGGAATACCCAAGTACTTTTAGAAAAAGATTGGATTCTTTTTGTTCTTCCGGTGCGTCAATTTGTTTTTCTTGCAAAGTGTCATCTCCTTTTCTCCAAGTATAATGGAGTAGAAAAAAGCCTATTACTTAAGGAAAGAGAAAAGATTTATATTGATTAATATTTCTCCAGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGAGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCCCTCGCGAGAGGGGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1153407-1152501 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXLN01000004.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1153406 33 100.0 33 ................................. CTTTTGGTACGGCGGAGGCTGTTGACGCGCATC 1153340 33 100.0 34 ................................. TTTGTTGTTTGACGTAGGGACTACTACTTATATA 1153273 33 100.0 34 ................................. CCAAGAGGGCGTTTCCGGTCAACGGTGCTTTTGT 1153206 33 100.0 35 ................................. GATAAACCGTACATGCTCACTCATAGCAAGCTGCA 1153138 33 100.0 35 ................................. TGTTTGCTAGAATCAGAAGTACTTCCGATTTTCTT 1153070 33 100.0 34 ................................. AAACTTTACATATTGGGACGATACTTTTGGCATA 1153003 33 100.0 33 ................................. TCCTTTAGCATTATATGCCGTGGTGCTACGGCG 1152937 33 100.0 35 ................................. TATTTTGGCGGCATGGTTTTATCCGATTTGTTATT 1152869 33 100.0 35 ................................. TGTCTTTCCGCTATTTTGATAGCGCTATCCCTGTG 1152801 33 100.0 34 ................................. TCATCATAGTCCCTCCATCGTCATGGAGGCGGCG 1152734 33 100.0 33 ................................. TAAATCGCTTGTTTTTAACGCGGCCGGAGCTAT 1152668 33 100.0 34 ................................. CGCACCGTCATTATGGAGTTTGTCGTACCATTTC 1152601 33 97.0 35 ...........T..................... TACAATGCGCTGGACAGTGAAGACGTAAACTACGA 1152533 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 14 33 99.6 34 GTCGCCCCTCGCGAGAGGGGCGTGGATTGAAAT # Left flank : TATATTCGGGGAGATATTGACGAATATCCTCCCTTTCTTTGGAGGTAGCCGATGCTTGTGCTTATCACCTACGATGTGAATACAGAAGATGCCAAAGGAAGTAAGCGGCTGCGTAAGATTGCGAAAATTTGTGTGAATTATGGTCAGCGCGTACAAAATTCGGTATTTGAGTGCCTGCTCACACCTGCGGAAATAAGTATTGTAAAGAGTCAACTACTTACCGTTATGGATGAAAAGAAAGATAGTTTGCGTATTTATCATCTGGGAAATAATTATAAAAGCCGAATCGAACATTATGGAGCGAAACAAACGTATAACCCAGAGGATTTAATGGTGCTTTAACGCGAACCATAAGTGCCCATGCTTTTACTGGGGGATTCGCACACGAATTTTCGTTTAATAGAGCAAGTTAAAAATGATTACTTGCGAGTTTTTCTTATTATTTTAAACAATACAACTGATTAGAAGAATGTAGTATGAAATAGATTGGTTGTTTTGCA # Right flank : TCAACCCCGTCGCAAGGCGGGGCTGAGAAAACGTTACCTATCATACCAGAAAGCAGTGTTGAAAGCGTAAAAAGAAGGTATTGGTTTCAAACCAACACCTTCTTTTTATATAGCGGCAACCTGCAACGTGAGATATAGGAGTAACCACCCTTTTAAATTTCTCTTGCAGCTGTTTCACTTCTCCAATTGCTTTAAACAGAACTAGATACTCGCGTTTATAATCTAGATTGCCGTTTTATGGAAAAAGGTTGCAAAATTGGAAAAAAATGTGGTATCGTTATGAGTACATCAACACTTTACTATTACCATGGAGCTTATAATAAATTAAGCTAGAAAAGGATGGTAACGAAGAGTCTAATGTAAATACTAGTAAAAGAGTGAGGGTTTGCCATGAATGAAAAAGAAGTTTCAGAAATTCGCCGTCGCTTTCGACCCGATAAAAATAATATTCGAAGCATTCGCGGGTGCTATGTGAATAAAGAGGGTGAAATGATTTCACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGAGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCCCTCGCGAGAGGGGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //