Array 1 137986-138619 **** Predicted by CRISPRDetect 2.4 *** >NC_009616.1 Thermosipho melanesiensis BI429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137986 30 100.0 36 .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 138052 30 100.0 39 .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 138121 30 100.0 37 .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138188 30 100.0 39 .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138257 30 100.0 36 .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138323 30 100.0 37 .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138390 30 100.0 37 .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138457 30 100.0 36 .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138523 30 100.0 38 .............................. ACATTATTGTCATCCTCTGTAACTAGTTACAACACGCC 138591 29 83.3 0 ....-.TT........T...A......... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Left flank : TTTAAATACTTTATAACCTCCTCAAGTTCTTTTATTTTTACATCTACTTCTTCCGGATTGTTTGAAGACACAGCGCTTTTCACACAAGTTTCTAAATGTGAGTTCAATACCTCAACATTAGCTTTTTTAAGGAGAGATATGGTGGCAAGAATTTGTTTTGAAATGTCTATACAATATCTTCCTTCTTCTATCATTTTCATAACTGCCTCAAGCTGCCCTCTGGCATTCTTTAGTGTTTTTAACGCATTTTTATGTTTCATGTCCAAACCTCCCAAAATTCTTTTACACAAATGAATTATATCATATAGTTAAATGTACTTTAACAAACCATTTTTACATATTTTCTGTCGATCTTAGATAGCACAAAAACCCCTAGGGATCGACAGAAATTTTTGTTAATTTTTATTACAACATACTCAATTTATTTACACTTTACAGATTTATATTATTAAAAGTTGCAAAAAAATATTTTTTGTAATATAATATTTATGAAAACTATG # Right flank : CATCTCTCCTTGAGGGAAATTCGTTGAGGCCCTTTGAACTTTTTACCCTACCTTGAAAGTTGAAACTTATATATCCATGTTAAAATTCCAATAGTAGATATACTTACATTAAGGAGGCATAAAAATGGACTTTTGGAAAATTGTCCTTTTCTCTGTTCTCATATTAATGCTTTCTCCTTTTCAAGTGGAGGTTTCTTCTCATGAAAAGCAAGCATGGTTGAAAAAGGTTAAGGAATACGATGGTGTTCCCTACAAATGGGGAGGAAATTCAAAAGAGGGTATAGATTGCTCAGGACTTGTAATAGAACTTTATCATGCAATTGGAATATTTCTTTTTAAATACGAGAATACTTTGTTACTAGATGTAAGTGCTGATGTGTTGTTCAAATACAATACACGTCCAATAGAATTTTCTGAGTTAGAACCTGGAGATTTGATTTTTTATGATACCGAAAACGATGGAATAATAGATCACGTAGCTATTTTTGCAAAAAAGGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCTTACCTTGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 360534-360035 **** Predicted by CRISPRDetect 2.4 *** >NC_009616.1 Thermosipho melanesiensis BI429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 360533 30 100.0 37 .............................. TATTTGGTGTGTGTGTATCTATTGTTCTCAGCTGAAT 360466 30 100.0 37 .............................. AATATATATTGGATCCGCATCAAGTAGTGACTTGAAA 360399 30 100.0 38 .............................. GAATTTGCGCTTTGTCAAGATTGCTGGGAAGAATATTG 360331 30 100.0 39 .............................. AGAAACAAAACAATTAAACAAACCATCATTGTTATTTTG 360262 30 100.0 35 .............................. GCCTCTATTTGTGTTAGTTTCTGAATTGCTTTCGT 360197 30 100.0 36 .............................. TGATGGAACAGTAAGGTTTCAATTAGCCATTCCTGC 360131 30 100.0 37 .............................. TAACGGCGAAATATGGCGCTCGTTTTGAGTGCTTTTT 360064 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTACCTTACCTTGGAGGAATTGAAAT # Left flank : TTATAAACTAGAAAAACATTTTTTGGATGATGAGATTTATACATCTCTAGTTATGGAGTGGTGAATATGTTTGTAATTTTGTATTACGATGTTAATAAAAAAAGAGTTTCAAAAATGCTTAAAACGTGCAGGAAGTATCTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTAGTATTTCTAACTTGGAGAGATTAAAAATCGAGTTGGAAAATATAATTAAAGATGAAGATTCAGTAGTGATATATACTTTCAAACAAATGTTTTACAGTAAAAGAGAAGTGTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTATTTAGAAAAATCTGTCGATGTGTAATAGAAGAAAAACTCCGGGAGATCGACAGAAAACAGAATAACATTTTTGTAACTTAGGAATACATTGTGTTAATTATGTTAAATTTAATATGATATAGTTTCAAAAGTATTGCTCTTGAGAAAGAAATATGATAGAATATTAATGGATTCTATG # Right flank : GAAGTTTTAAAAAGTAAGTGTAGCTTATTAAATTTTTTAGCTTTAGAAGAAAATTGAGATATTGGGATTTGATTATTTTACAAATTTATTGATAGGGTTTCGAAGTAGAGAAATAGATATTTTGATTTCAATTGTTTTAATGAGAAAAATATATTTTTTGGGTTGATTTAAAATAATCTAGACAAAACAATGGTTATATTTTAACAAAAGATTTTAGCTTTACTGTTATTATTTTGTTTTAACTTTTGTTTTGGTTGTATTTTTAATTTATTAAAAACAAGAATAAATGTTTAAATTTAAGTTATAAGTATGATAAAATAAAAACGATCAGGTACATGTTGGAAAGGAGGAAGTTGTATGAGACAACGTATTTTGTTTAAGTTGGTAACACCAATAATTATTTTGGCATCTTTGATTATTGTAATATTTATAACTACCTACGTAATAACAACTTCTCAAAAGTTTGATGCGTTGATTGTTAATCTTGCAGGAAGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCTTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 758170-754563 **** Predicted by CRISPRDetect 2.4 *** >NC_009616.1 Thermosipho melanesiensis BI429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 758169 30 100.0 38 .............................. TAGTCTTGCTTCGAAAGGGCACGTCGCCGCAATAAAAA 758101 30 100.0 40 .............................. ATAATTTCAGCAAAGGGCTTTCTGTGATCAACCAAAATAA 758031 30 100.0 42 .............................. TGTTCAGATTCTTGTGCTTCTTCTTTTAATGTTTTAAATAAG 757959 30 100.0 44 .............................. TTTACCCCTACCCAAGCACCGCTTGAGGTAGGGGAATAAAACTC 757885 30 100.0 43 .............................. GTTGTAGTATTCGTAAAAATACATTGCTAAATGCTATTATATG 757812 30 100.0 34 .............................. TGCGAAGCATAAAATTTATAAAAATTTAAAATAC 757748 30 100.0 40 .............................. TGTGTTTCAGTAAATACCAAATATCTTGCATGTTTTGTTT 757678 30 100.0 40 .............................. TGACAATATAAAACAAATCGTAACTGTCACCGAAATCCCC 757608 30 100.0 40 .............................. TAAACTTTACTTCTAACAAAATCCTCATAATTAAAAAATA 757538 30 100.0 40 .............................. AACATAATACCCCACCTCCTCATGTAAATCAATTATTTCT 757468 30 100.0 40 .............................. ATACAAGTCAACAACTGTTAATTTTTCTACAATATAATCC 757398 30 100.0 40 .............................. TACACGACAGGCCATGGCACCTTCCCGCCGCTTCCTGGTT 757328 30 100.0 40 .............................. GGGGGTTCGATTATAGCCCCTTTTTTGACAATATAAAACA 757258 30 100.0 44 .............................. ATAAACTTTACTTCTAACAAAATCCTCAAAACTAAAAAATATCA 757184 30 100.0 42 .............................. CTGCAAGCTTTTCAAGTGCGACATTCAAAATTGTGTCTAATG 757112 30 100.0 36 .............................. GGTCCCCTATTATTGCGAGGACTAGCAGTTTAATAT 757046 30 100.0 41 .............................. CAGGGTCACACCCCGAGTGACCCTGCAAATTTTCTTAATTC 756975 30 100.0 35 .............................. AAGTCAATACTGCTCTGCCATGACCGCTATCATCG 756910 30 100.0 40 .............................. AAGGATTTCAACAATTCTATATCAATCCTCTTGAAATACA 756840 30 100.0 41 .............................. CCATTTGGAAGGTCAGATTGACCTTCCCGTTTTGCAAGGTT 756769 30 100.0 37 .............................. ACGTCTCGCCAATTTTATCGCCAGTTTCTGGATCAAT 756702 30 100.0 43 .............................. TCAATATCATGCAAGTCCACCATTACTTCTTCTGATAATTCTC 756629 30 100.0 40 .............................. CACCCCCGCCAAAAATTTTTGTTTCAACCTCCATGCTTTC 756559 30 100.0 43 .............................. GTATTTGTCCATATCCAGAACCCACACAATTATAAAATATATA 756486 30 100.0 46 .............................. TAGTTACACCATTACCTGATAAATTGCCAATGTTAGGGGTTTTTAA 756410 30 100.0 39 .............................. CCTCTAAAATACTTAGAAACAAATGCGCCTAAAATGTTC 756341 30 100.0 39 .............................. AAGAAATTTCAATACAATCACCCAGTCTTTGCACTTGAA 756272 30 100.0 43 .............................. TTAAATTGTCGCTCAAACGATACTCTTGAACCTCAAAAATACC 756199 30 100.0 42 .............................. CAACCTCTTCGATGCTACGTTTTAATTCTTCTACATGATCCT 756127 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 756058 30 100.0 43 .............................. GTTTGTTTCATCATCGTTCCATATTTCAATTGGTAATTGTTTT 755985 30 100.0 40 .............................. GAAACGATTCCATTGTTAAGTAAAAAAAGAAGAGGACTTT 755915 30 100.0 41 .............................. TTTGTTTTTGGTTGCCTGAATCATACCTGATAATTTTTTGT 755844 30 100.0 38 .............................. GCGACATTGGTAAGTTATACACCAAGCGCGCTAAAAAA 755776 30 100.0 42 .............................. AGATTTTAGTTGATGTACTCTCTTGACAATGCGTTCAAATAG 755704 30 100.0 41 .............................. GCAGTTTTTTCAGCATCCCAGCCATTAGTCCAAAATTCGTC 755633 30 100.0 37 .............................. ATTAAATCTTCATAAAGTCCTATTCCATAATACTTTT 755566 30 100.0 47 .............................. TTGAATTCTGTGATGGATAAAATTTATAAAAATTTAAAATACATTTT 755489 30 100.0 40 .............................. CTATCAATCTTCCTGAAATATATATTTACATATTCACCAA 755419 30 100.0 37 .............................. TAAACTTTACTCCCTTCAAAATCTTCAAAACTAAGAA 755352 30 100.0 39 .............................. CTTTTATTTGATCTAAATCTGCGTTTAGCGGTAAGTATA 755283 30 100.0 40 .............................. GTACAAGTTTGATTAGGTCTTCCTCATCCAATTTATTAAT 755213 30 100.0 37 .............................. CGACGAAAATGATTTCTCCCTCAGAGGGGGGGACTAC 755146 30 100.0 41 .............................. CTGTCCTGCACCCTATCATAAATATTCCAAATACATATTTC 755075 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 755006 30 100.0 38 .............................. TTTGGCAGCCACTGTTGCCTCAGCCACCGTGGCGGCAA 754938 30 100.0 40 .............................. TAAAAATACCCGCAGGCCATTCTTCATCAAAAATAATTGA 754868 30 100.0 40 .............................. TAACTTTTTGCCACGTTTTGTTGGCAACGTTTATTGTTTC 754798 30 100.0 38 .............................. GTAATATTTGGCTTTTTCAAGTTGATCCACGATTGCGT 754730 30 100.0 38 .............................. TGAGGCCTTGTCTTGAACCATATGCTTGGATATGAGAT 754662 30 96.7 40 ........................G..... TACATTTCATATCCAGTATCGTCGCAATATTGCAATGTTA 754592 30 93.3 0 ........................G....A | ========== ====== ====== ====== ============================== =============================================== ================== 52 30 99.8 40 GTTTAGAATCTACCTATGAGGAATAGAAAT # Left flank : CATAAAAGTTTGAAAACTATCTTACTCAAAATCGATAAATCAAGTAGCTCAAAAAAAACATGGCATTGGACTTATCCAACGCCATGTTTTGTTATAATAAATAATTAATTAAATAAAATCAAATCAATTTTTCGAAATAGTATAAATTAATATTGATGTAATTCAAAAAATAATTCAAATAAGTAAATTGTAGATATAAAAAATAATCATTTTATATTTACAAAAAAGAAAAAGTGAATAAAAACACAAATAAAACCGTTACGAAATTCACGGTAATTTTTCTGTAACAACATATCGCAAAGTATCTTTAATAAATGATTTGCAAAATGCTATTTGTAACGTTTGTGTTAAGCAAGAAAAATAACCCGAAAATTGAGTAGGTTTTCCGAAGCTAAAATGTGAATGAAGCCTCATGAATAAATAATTTTACAAATTAGAAACTTCCCGGAAATGCATTCGTAAAAAATAGGGTGTTATAATATTTATGGGGAAAGTGACGG # Right flank : TTTTCAATAGGGATTGAAATATATATTCAAAGAGTTACCTAACCACCCTTTTAAATTAAGGGTGGTTTTTATTTGATTACTTGACTTTTTAAGTAAGAAGAAAAAAGATAAAACAAGATGTGAAAATGTTAATTTTAAAAGGGAAAAATCATAGAGAAATACCTATTTTTGTAACAACAAAACAACGAAGTACATATATATCAAATATTTTTATTATTTTAGAAAGGTATAGGCGAAGAAGCTGTTTATCTTCAAGTTTAAAAAATAAAACTTAAAAACGGAAAAGACAACATTAAATTATGTGTAGGTTATGATATCTTAATAATTAACATTTTTTTATGGTGCTTTTAATTTAAAAAAATGTAAAGATGATATAATTTAGAAAACAAATATGGGGGGTGTCTTTTTTGAAAACAGTGGTTGTTTTAGATTATGGTTCGCAGTATACCCAGCTTATTGTAAGAAGGGTACGTGAAAAGGGGTATTATGCAGAACTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 1639790-1638704 **** Predicted by CRISPRDetect 2.4 *** >NC_009616.1 Thermosipho melanesiensis BI429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1639789 30 100.0 40 .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 1639719 30 100.0 37 .............................. ACTTGACAATGGCGAATCATATCTGAAATCACAATCG 1639652 30 100.0 38 .............................. TATGAATAAACAAGAAATGATAGAACTGGTGATTTTTC 1639584 30 100.0 42 .............................. ACTTGCATGATATTGAATATATAGGAGTTCTCAATTCTAATG 1639512 30 100.0 43 .............................. AAAATACATATAGGGTAGAGGATATAGTTGCATATTTTTACAA 1639439 30 100.0 43 .............................. TATTTTATTCTTCCGTCAGGACATTCATTAACGTTGCCCAGTA 1639366 30 100.0 44 .............................. GGTAACTTTTGAGTTGCCGCGTACCACCCTTGTGGAAAACCTTG 1639292 30 100.0 43 .............................. GGGGAAAGCATGGAGGTTGAAACAAAAATTTTGGGGGGAGGTG 1639219 30 100.0 38 .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 1639151 30 100.0 39 .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 1639082 30 100.0 41 .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 1639011 30 100.0 36 .............................. TCTTTTCTCATCCTTGGGGGTGATCGCCCCCAGGGA 1638945 30 100.0 40 .............................. GGAGGTAAAGGAAAAATACGGAATTGGAGTTATAAATTTA 1638875 30 100.0 40 .............................. ATGAAGTTATTCGTCGTGCTGATTTAAGTAAATTATTTAA 1638805 30 100.0 42 .............................. TAAACAAATTTTTGAAAGAAGGGGGTGTGGCGGTAACTGTAG 1638733 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 16 30 100.0 40 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTCCGTTATTTTGCCCTCAAATACAGATTTCTGCACCCATTTTAAGTATTTCCTTGCCGTTTTTAAAACTTTTTGTACTCTTTTTTTATTAACATCATATACCATTATTACGTACATTCCGTTCACCCCTTGTTTTTAAAAAGGTATCCCCAGCTAACGCCGGGAATACTAAATCCAAAAAAACATAAAGACAAAGTACATCAATGTATCACAATTTTCAGCCAAAAACCTGTAACATATAAAACCGAAAAATTAAACAAGCAAAGTTTCTTTTTCAAAAATCCTTATCACAAATTTGTATGCAACCTTTATCCTTTTCATTATATTTAACGAATCATATTTAAATAATCTGACATAATCCAAAAAAAGATTACAAAAAAACTGGTGAGATTTTTTCTCACCAGTTTTTCATAAAAAACAAAAAATAAAAATTTTATTCCTTAGCTTTTGTATCATATCAATACAATCTGAATTATTTAGAATTTATATTATTACCACAA # Right flank : CCGTCACCTTTCTCATAAATATTATAACACCTTATTTTTTGCGAATGCATTTCTAGGAAGTTGCTAATTCGTAAATTCACTTATTCATGAAGTTTCTTTTGCATTTTCATTTCGGAAAACCTACTCAATTTTTGGACTATTTTTCTTGCTTAACACAAACGTTACAAAAGACATTTTGCAACCCATTTATTAAAGCTCTTTCCCGGCATGTTGTTACATGAAAATTACCGTGAATTTCGTAACGATTTGCGATGTTGTAAATTGTTTAATTTGCGAAATAGTAAATTTAAATATAATTTTTTATTAAATTTATTCATATCAAATTATCCAAATATTTTATATTTTTATATTTTACACTTTTTTCAAAAATCTTTTTAATCTTTATATAATTATATAATTTACTTATTTGATAATTTTAATCTATTTATTTCCTCGCTTAATATTTTTCAGGGACTTTACTTATTTTTTTATATGTTTCACTCAAAACTAAATCATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1651852-1650980 **** Predicted by CRISPRDetect 2.4 *** >NC_009616.1 Thermosipho melanesiensis BI429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1651851 30 100.0 41 .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 1651780 30 100.0 39 .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 1651711 30 100.0 38 .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 1651643 30 100.0 41 .............................. AAAAGAAGAGGACTAAAAGTCCTCTTCGAAAATAATCTCTA 1651572 30 100.0 41 .............................. TGGTAATAGCCACTTCCTTTTGTGCCTGGTTAATTAATTTG 1651501 30 100.0 40 .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 1651431 30 100.0 42 .............................. ATTCTTTCATCTCCTTTAATAATTCATCTAAAAAACATAAGT 1651359 30 100.0 39 .............................. CTATTTTCCTTTAAAAATCCTTTTTCTGATAAATATTTA 1651290 30 100.0 37 .............................. CTGTGTGTGGACACCCTTGCTACCATCCCTGACGTGG 1651223 30 100.0 39 .............................. CCGCAACCCCCCACCCACGATTTTTGTTTCTATTATTTT 1651154 30 100.0 43 .............................. ACGCTATTCTCTCAGCGTATTTTTCTATTTTCTATATAAAACC 1651081 30 76.7 42 ....T....A.G.TA.....AG........ TATCCATGGGAGCCTTCTTATAATTTTTTCTCTCAATCTCTT 1651009 30 76.7 0 ......T....C..C..A..A.......TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.4 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Left flank : TTATATCATGAAAATTGAATCATATGAAAAATCAAAATTTTTAAAAGAATTTAGTTGGTAAAAAAGTTATAGATAAAATATCAATCGATTTATGGTAAAAAATAAAAATAAATTCGAATTAATTTTTAAAAATATCTTCAATTGTTCAAAAATAAAAATAATTAATTTTTCAAGAATTAAATAATATGCAAAAATAATAAAAAATTATATTTAAATTTACTATTTCGCAAATTAAACAATTTACAACATCGCAAATCGTTACGAAATTCACGGTAATTTTCATGTAACAACATGCCGGGAAAGAGCTTTAATAAATGGGTTGCAAAATGTCTTTTGTAACGTTTGTGTTAAGCAAGAAAAATAGTCCAAAAATTGAGTAGGTTTTCCGAAATGAAAATGCAAAAGAAACTTCATGAATAAGTGAATTTACGAATTAGCAACTTCCTAGAAATGCATTCGCAAAAAATAAGGTGTTATAATATTTATGAGAAAGGTGACGG # Right flank : TGCTTTGTGGTACATTCATATACGAAGTTTTTTAGTTTAGGTCTTCCTAATTATTAATTATTACTCAGTATATATTAATAAACATGTATTAAAAGGATATTTAAACGGGAGATTTTGTGACAAAAAAGTTTATTAGTATTTTTGGAATAAATAATTACTAAAGAAAATAAATATAAAAAACGATATTTTTGCAAACAATAGGGAAAAGACGATAAAGTTTTAATATTCTTAACTGAGGATACAAAAAAATTAAATTGAGACAACTAATCTATAACAAACTTAGAAATTTAAATTAGAAAACTTAATGAACGGTGGAATGTTAAATAAACAGAAGAAAGAAAAAATGTTCGCGTATTCCTATTATGCTTCGTACAATAAGAAAGAATTTGTATTATGAGTAAAAGTACTGGAGCAAATAAACATGATAGTAAAATCTTTGAAAAAACATTGGAAAAAAACAATAGAAAACCAAGAGCTGTAGCAATAGATGCTGGGTATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //