Array 1 98003-96632 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIYI01000011.1 Klebsiella variicola strain WUSM_KV_14 NODE_11_length_168831_cov_26.8891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98002 29 100.0 32 ............................. CGCCTGGTGCCCCATTGTGGCCTGTGCCAGCC 97941 29 96.6 32 ............................C TGCATTGTTCGGCGTTAACTCGTATCGAAGCA 97880 29 100.0 32 ............................. TTGGCAGCATTACCAGGGCGCAGAATGAAATA 97819 29 100.0 32 ............................. GACATTGGCGAGGTGATCGCCTGGCGTGAGCG 97758 29 100.0 32 ............................. CGTCTAGCGCCGCAGCTATTCCCGCACTTGCA 97697 29 100.0 32 ............................. GGCCGACACGTAGCTGATTTGACACTGCGCGA 97636 29 100.0 32 ............................. GTACAGTCCTGAATAACGCCTCGCGTGTAATC 97575 29 100.0 32 ............................. CACACCCTGGCGAAATACACCCGCCGCGGGAA 97514 29 100.0 32 ............................. CCGGGTCATAAAGTTACGCTGGCCATCGAGTC 97453 29 100.0 32 ............................. CATGCCGCGGGTTGGCTGCTGAATACGTTCGA 97392 29 100.0 32 ............................. TAAATACGGCAATGCAGCCATAGGCAGGCTCA 97331 29 100.0 32 ............................. TCCGCACAGATTCGCTATAAGATCCAGCGTGG 97270 29 100.0 32 ............................. CGTCAACACCCAGCAGCATCTTTGAATAGCCA 97209 29 100.0 32 ............................. ATGGAAATCAATTTTTGTTTTGGCCAACGCGC 97148 29 100.0 32 ............................. AATGAGATCAACGGAATTATCTGGCAGGGTTT 97087 29 100.0 32 ............................. CAGGTGCGAAGTTTTCGGGTGGGTCAAACCTC 97026 29 100.0 32 ............................. ACAGTAACATCGTCCAGGGCTTCACCCTCGAT 96965 29 100.0 32 ............................. AACTGGTCAAGGGCTGCGGTTTCGCAGTACAT 96904 29 100.0 32 ............................. GCTCTCAATTGGGTTCACATTAATTACCCCTC 96843 29 100.0 32 ............................. TGATGATGTTCAGCCAGTACGTCAGCGGGTAC 96782 29 100.0 32 ............................. CTGTTCACATCAACCAGAGCAAACATCACATC 96721 29 96.6 32 .A........................... TCGAGGCGAAAATTTACGCCGGGCGTTTTCAT 96660 28 79.3 0 ...........AT..-.....C...G..T | T [96647] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATTGAGCCGCCTCAACCACCGCCGGATATGCTGCTGCCTGCGATACCCGAACCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTAACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGCGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACGAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTGGATGGCTTACGACTGGTGTCATTTCTTCCCATTGAAAATCAATGAATTGAGTGTTCTTTAATAATGTGAAATTGTTGGGATAAAGCTGGTGAATTGTTGTGTGCTTAAAAAGATATTATAAGACAGTAATATATCTTTAGT # Right flank : GCAACTAACAATCAGGCGCCATCTCATAGGCTGTTTGATGGCGCAGGATCAGCACCGCTTGCCACCAGCCCTGCGCCTGAGCTTTTTTGTGTCCTTTTGTCGGCAAAGCATTGATAAACGCCTGGGCGGTGTCTCTATCCTCAGTTAGCGCAAAATAGGCCAGAGCTTTTGCTACTGGCCCGTGCGCATCAGGCGTCGTGCGAGCAGATTGCGTAGCCTGGCGTCGGCGCTTTCGCGCCCGGCATTTTTCGGCATATTAAGATCAGAAGGAGAAGGTGCCGGGACATATTTATCCACGAAAGCAATGAGCTCATTGACCGTTAGCACCCGTTCGGCAATGTGCGCGACATCCGGCCAGTAATTTTCTTTCGCCTGATACATCAACCATATCGCCTGCAGATAGTCGTCGCGGTTGAGCGCGAGTATCGCCTGCTCGGCGTGAATACGGCAGACCGGCGTCACAAACTCCTCGCTGATAATGTCATCACTAGACTGCTGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1560-2256 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIYI01000089.1 Klebsiella variicola strain WUSM_KV_14 NODE_89_length_4937_cov_83.4932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1560 29 93.1 32 ............TG............... TTTTGATGGTTTTGTTCGACTTTTTTTTGCAA 1621 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1682 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1743 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1804 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1865 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 1926 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 1986 28 93.1 32 .....-......T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 2046 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 2107 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 2168 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 2229 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //