Array 1 803094-800784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSNW010000001.1 Proteus terrae subsp. cibarius strain SDQ8C113RT SDQ8C113R_1_length_1066412_cov_121.070545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 803093 28 100.0 32 ............................ TCCTGGTTCAGTGTGGGCCTATCGCACATATA 803033 28 100.0 32 ............................ TTGCTCCGCTGACTGTCATTGACTCTATATTC 802973 28 100.0 32 ............................ TAATGCAATAGTCAACACATCAAAGTTTATTC 802913 28 100.0 32 ............................ AGCATACGGTAGTAATGTATCGATAATTCGAC 802853 28 100.0 32 ............................ AAAGCAAGTTAGCCTAGCTACAAGAAGTCAGT 802793 28 100.0 33 ............................ CAGTAGTCCAATACTCATAGAGCACGTCGTCAC 802732 28 100.0 32 ............................ AAACCATCTCATAGAACTTGCAGGAGAGAAGT 802672 28 100.0 33 ............................ ATTTCAAAACCAATGAAGTTAAATCCTTCTAAC 802611 28 96.4 32 A........................... TGTACAAACCTCAACATGGACAATATCAAGCG 802551 28 100.0 32 ............................ TTGCTCGCATCATGAGTTTGCTCTGGGTTATT 802491 28 100.0 32 ............................ AGATCCAGTGGCATACTTTGGAGGTGCTAAAT 802431 28 100.0 32 ............................ GCGAAGAGCTTGAAAGTATTCAATCAAACGAC 802371 28 100.0 32 ............................ ATACCCAAAGAAGGCAGATGGTTGGTTTCTTA 802311 28 100.0 32 ............................ AAAATATTACTATGAATTCTTTTTCACTAATT 802251 28 100.0 32 ............................ TGCTGATTACGGGCTGAAAAGTTCCGATTAAA 802191 28 100.0 32 ............................ AACACCCATCGAGTCAGCAAGTGCAACCATCA 802131 28 100.0 32 ............................ TGATTAGATAGGTCATCACTAATGCCTGAATA 802071 28 100.0 32 ............................ ACACGCTATTTTAATCAGAAAGATGCTGATTC 802011 28 100.0 32 ............................ ATTCAATATCAGGGGCTAACTCTGGATTAATA 801951 28 100.0 32 ............................ TTTCACTCCTGTATTTTTAGCTCCAGCCCCCA 801891 28 100.0 32 ............................ ACGAAGCACTTTAATACCGTAATCCCGCAGTT 801831 28 100.0 32 ............................ ACCAGCCTCTATTGATGGATTATTACTATCTT 801771 28 100.0 32 ............................ TGGGAGTTTCAACGTCGGTTTCCTAAAACCCC 801711 28 100.0 32 ............................ AGGTGAAGAGCAAATTCTAGCAACGGAAGATA 801651 28 100.0 32 ............................ ATGGGGATGGTCATTTGATTCCCCGCACGTTG 801591 28 100.0 32 ............................ ACAAAAAGACGAAACCATTAAAAATAATGGCT 801531 28 100.0 32 ............................ CGAAACATTTGATAACCGAAAAAAAGCAATGC 801471 28 100.0 32 ............................ ATCACATGCTCTGGCGCACGTTCACGGACTTT 801411 28 100.0 32 ............................ CAACAACACAGCACCACACCGATTTTACAACT 801351 28 100.0 32 ............................ ATACAGTCAGAAAGTATTTGAAGATGCTTGGT 801291 28 100.0 32 ............................ TATATGGTGGATGAAGTAGTAAACACTATCGA 801231 28 100.0 32 ............................ TGTGGCGGTATTCTGTCCGACACCATAAACAA 801171 28 100.0 32 ............................ AGTCAAACTCATAACTAATTCTTTTTGTTCGT 801111 28 96.4 32 ..T......................... TACCACCAATCACCAAAACTTATTCAGAGGAG 801051 28 96.4 32 ..T......................... TATTACAAATCCCCATTCATAAAGTGAGAGAC 800991 28 96.4 32 ..T......................... TGAGAAATCAACATTCCTTCATCGTCATTGCA 800931 28 96.4 32 ..T......................... TATGAGTGAATATCGTCCACTGGCAACCAAAA 800871 28 92.9 32 ..T..............T.......... CATAATCAAATCACCGAAAATAATAAGGTGAT 800811 28 89.3 0 ..T......T.......T.......... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.1 32 GTCCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTGGGAGAATATGCCTGTTTTACGCGCCACAATCCTAAATCTCAACAGCGTCGCTTAAAGCAATTGGAACGTCGAACTTCTTACTTAGCACAAAAACATGGTGTTGATGAAGATACTATGCGAGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCAATAAGTCGAACTCGCAATTGAGGAATAGCAACACATTTTCTTGTTATGGGTTGAGCCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAACCTAAATATTCAATAGCAAAACCCTTTATTTTTCGCTCTTTAAAAACTTCAGTAAAAACAACAAGCTATATGCGGGCGTTTTTAATAAGGTAAGAATGGTTAAATCTTACTAACGTCTTGCTGGAGCTTGTTTTTTCGTGATAAAGCTATT # Right flank : TATAGAGGAGAGATTGTTTTTCAGGGTTAAGGGCTCACTGCATCCCGGATGTTTTATTTCCGTTCGTGTACAGATGCTAGAGCAATCCATTTATAACGTGAGAATGCGTGAGATGGAAAAGTTTCTTTTGGTACTAAAAAACTATAGAGAAAATAAAATTATTAAATATGGGGATAAGGCAAGGATATTTATTTGGTATATGGAAAATATACAGAAAAGAAACGCCACTATAGAAATAGCACTGCCTTTTTTAATTCAAGATTTTCGTAGTTATAGTTTAGGGAGTGATCTTTCAGATGATGAGATAAAAAGTACAATAAGGAAAGTTAAAGAGTATCTTATTCAAGCTGAAAATAGGTATAAAAAAACTAAAGGGTATGATAAGAGTTAATCAGAACACCAATAAGACACCAGAAATTGATAACTGATTGAATATATAATTCGATCACTGGCACTACTTTATTTTTTCAATAAATTAGCCATTTCTGACATTCGTTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 814057-811807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSNW010000001.1 Proteus terrae subsp. cibarius strain SDQ8C113RT SDQ8C113R_1_length_1066412_cov_121.070545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 814056 28 100.0 32 ............................ TAAAACAGAAAGTGACAGCAGTTGCAAGTGCC 813996 28 100.0 32 ............................ TCGGGTCGCCGACCAAAGCTAACCGAGAGTTC 813936 28 100.0 32 ............................ GATACCAAAGTTCATCCACTCCGTGACCATTT 813876 28 100.0 32 ............................ TGATCGCTAATCTTTAGCTTCTTAGCTAAAGC 813816 28 100.0 32 ............................ TTGATTCTGCTGCGACTTCTGGCTTCCTGCCT 813756 28 100.0 32 ............................ GCACGCCTGCATCACCATCATTGCAGTTTGTA 813696 28 100.0 32 ............................ TTTGTAACCGAACCCTGCGGAGTATCATAAGT 813636 28 100.0 32 ............................ ATTAGAGCCAGTATGACCAAGGAGGCGTTTCT 813576 28 100.0 32 ............................ ATCAGCAATGGCTTCATTAAAGGCATCTAGCA 813516 28 100.0 32 ............................ AAACGCGAAAAATTACGACAGCGGTTAACTAT 813456 28 100.0 32 ............................ TAAATTCGCTCGCGCTTGTGATAGACATATTA 813396 28 100.0 32 ............................ AATAACACTTGCTTCAAATTCCGTATTGATCA 813336 28 100.0 32 ............................ ATTGTGGGAAAGTTTCAAAACTCCAAGTGAGT 813276 28 100.0 32 ............................ AACCAAAAGGGATTATTGGCGACATTCTTAAT 813216 28 100.0 32 ............................ TAGAACCTTTGGGAATACCTGATAAGACACGA 813156 28 100.0 32 ............................ CCTTTGATGGTGAGATGTTTGTTTGTATCACT 813096 28 100.0 33 ............................ CGACAAAAATAGTTCTGGTTGCCGGAGGTAGCA 813035 28 100.0 32 ............................ TTGCTGCCTGTTCAGTGAGAGATACATCATCT 812975 28 100.0 32 ............................ CATACGCTGGCTAACTAAGGATGAAGCAAGCA 812915 28 100.0 32 ............................ ATCGGCAATTAGAGCGCATACATCGTCCGCCA 812855 28 100.0 32 ............................ CCCACCCGACGTGGCGACCAAGATATATCCAA 812795 28 100.0 32 ............................ ATCAAGGGCGATTAATTCAGACTCTGAATATT 812735 28 100.0 32 ............................ TTCACACTCAACCGCTAATGACTCATAAAATT 812675 28 100.0 32 ............................ TGCTAAATGTCTCGGAACAGTAGCAACACCTT 812615 28 100.0 32 ............................ AAACTGGTGATAATCACGCTGGGTTAGCGTTG 812555 28 100.0 32 ............................ TTTAACGCTAGCTTTCTTCACCCACACTAATC 812495 28 100.0 32 ............................ TATTGTTTAATTTATCCAGTTCACGGGTTAGT 812435 28 100.0 32 ............................ ATTACTCGCCGCTTGGAATTTCCTTGCGAGAG 812375 28 100.0 32 ............................ TAAAAATTGTGTGGAGAGAATAATGTCTTATA 812315 28 100.0 32 ............................ TCCAACTCACTAACCATTCGACTCATATACCA 812255 28 100.0 32 ............................ TAGCCCCGTAATCGCCAGTGGAGAAATACCGG 812195 28 100.0 32 ............................ AGTATTAAAGGGAAGCTGATTTTGAGCTTTCC 812135 28 100.0 32 ............................ ATTAACGGGGGTGTGGTGATAATGTTCTGCTC 812075 28 100.0 32 ............................ CATCCCGAAAACACTAATGATGAAACATGTGT 812015 28 100.0 32 ............................ TGTGACAGAAATCTCTATCACATGGGCGCCAC 811955 28 96.4 32 ..........G................. AACAGCCCACCATATTCACGTCCAAAGTGAAT 811895 28 96.4 32 ..........G................. TATTGCAGTGAACACAGCCAGCATGAATATTG 811835 28 89.3 0 .......A.........T..T....... | G [811809] ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCAAGGGCGTGCAATGCAATGCTCCTCTCTTATTCACGTTATTATTGATTCAACGGAAAATACGATTAGTCGAGTGAGAGTGGGCGGAAAAGCGACAATGATAGGTTCGAAGATTATTACTCTTTAAATTACTTGCGGTATTTTATATCAAGTTATTCCTAATAGGCCCCAGTGTAAAAACTAGGGCCTTTGTATTTTAAGTATTTATATAAAAACGACGTATTTATTGCTTCTTAAAATTTTATTATTGTTCGCTATGTGATTTGATTTTTCATTAAATAGATTTTATGGCAGAAAATGCGTAGGTGGTTTTTGTGAAAGTACCCGGAACGTTGAACTTTGGTTTTGACTTAAGTATATTCAATAATTAACCCTTTTATTTTGTTCTTTAAAAACGATAACAAAAACAGATGGTTACATTTTGCTGTTTTAAGCAAGGTAAAAATAGCTAAATGTTGCTAACACCTTGCTGTATCTTGTTTTTCTATGACAATACTATT # Right flank : TTTATTTAATATATTTAAATCTTTTTCAGTAGTTATTAAAGCGTGTTTCACTTGTATATTCCTTTCTTATTGTATTTAGAAATAACTATTTGGCATTTTTTATAATTAAATTTTCCTTAATAGTTCACATATATACAATTTGCTTATGTCATGCTTATTCCTTAATTGGTATTGTTTGGAAGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGAGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTTACAGAGTCGAAGAAAGAGAATCTCTACTTCAATATCCCTATTGCTAACACTACCGTCTTATTACTTGGTAATGGCACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCTGGTGTATTGGTAGGTTTTTGTGGTGGAGGTGGCACACCTCTACACATGGCGACTGAGGTAGAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //