Array 1 280929-280721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIJ01000005.1 Xanthomonas albilineans strain USA048 Xal-USA048-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 280928 28 78.6 32 ACAAC.......A............... CTCGCCTGCTTTGCTGCCCTGTGCCGGCGCTG 280868 28 96.4 32 ..................C......... TTGCAGGGCGCAAGGCAAAACAAGAGGTGTTG 280808 28 100.0 32 ............................ GGGAGAGATCGGCAGCGGGAGTTGATACATTT 280748 28 92.9 0 ....................A...A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GAGGCAGCGCTGGATGGGCATCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCCGCACCATATCCGGACACACCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCGCCTAGCGCATGTGAGTACGACATCCAGTCACGACAGGCATGATCGGTAACGCCCGTGGACAGGACGTCGCTGTCCGCACAAACGGCAGCGCCTGCGCCGGAGCGCTGCGCCAGGTGTGGATCCGCATCCGCGCATCCGCCCGATGCCC # Right flank : ATCAGGCACTGGATTGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCCCATGAAAAGGCCAGCTACGGCCTACGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATCTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCTGCGGCCGCCGCCGCCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTGCTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTAGCGCTGGCGATCTACACGATGATCGGCATC # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3328051-3331622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIJ01000005.1 Xanthomonas albilineans strain USA048 Xal-USA048-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3328051 28 100.0 32 ............................ GAGTGGGTACGCGATAGGTGCTGCCCAGTGTT 3328111 28 100.0 32 ............................ TCAACTCGGGACTTTTTTTGATACGTTACACA 3328171 28 100.0 32 ............................ GCCAGACCCGGGGCTGATCGCATTATTGCCGG 3328231 28 100.0 32 ............................ ATCATCTCGTCCGGCTGCAATAGCATTCGCTC 3328291 28 100.0 32 ............................ AATGCGCGCGCGCGGAATTTGAATCGAACCAT 3328351 28 100.0 33 ............................ ACACACCAACAAACGCGCCGAATGCGATAGCAA 3328412 28 100.0 32 ............................ GGATGGGTGGGCCGTCGAGCTTGCGCAAATTT 3328472 28 100.0 32 ............................ AGGCCTCCTGCAGCCAGCGCGGCGACGATCTC 3328532 28 100.0 32 ............................ CAGCCCAAGGAATCGCGCGCAGTTCGCGGGGT 3328592 28 100.0 32 ............................ TTTATTTGGCCCCAACGAGCTTGTCCCACGCA 3328652 28 100.0 32 ............................ TCAATCACGAAGAATCCAAGGTTAGCGCTGCA 3328712 28 100.0 32 ............................ CGCGTGCGCCCGTCGTCATCGCGCTCGCTGTC 3328772 28 100.0 32 ............................ AGAGGCATGGCCCAAATCGCAGACGCATCCGG 3328832 28 100.0 32 ............................ TGACCGGTGTGGCAGTCGATGCTTCCAACGCC 3328892 28 100.0 32 ............................ AGCGTGCGAATTCGCGCAGCAGCGGTGTTGCA 3328952 28 100.0 32 ............................ TTCCTGGCCCGGGCTATGCTCGAGCGGGTGTC 3329012 28 100.0 33 ............................ TGCTCGGAGTCGGAAACCCTCTTGATTTCTTCC 3329073 28 100.0 32 ............................ AGGCAGTGACGAGGCAGTCAAACTCAACGCAG 3329133 28 100.0 32 ............................ TCCGCCAGCGTGGCGATGCTGGTGGACTGCGA 3329193 28 100.0 32 ............................ AGTGGCTACTACGAAATCACCTTTCTTCTTCC 3329253 28 100.0 32 ............................ GGTTCGGTACGTGCGGCAGTCGATGGCGCAAC 3329313 28 100.0 32 ............................ TCGGAAACGCAAAAGCCCCGGCACTGGGCCAG 3329373 28 100.0 32 ............................ ACAGGGCAAGGTGCGTGGCACCGAGGAAAGCG 3329433 28 100.0 32 ............................ ACCACCGAATGCTTGTTGTACCACCAGCATCC 3329493 28 100.0 32 ............................ TTGAGCGCCTTGTCCCACTGCTCGCCCGGCAC 3329553 28 100.0 32 ............................ TGCTCGTCATCATGACGCTGCTGCACGCACTG 3329613 28 100.0 32 ............................ TCCCGCACCAGCGGCATACATCACCCCGCCCT 3329673 28 100.0 32 ............................ ATGCGGGTTTGCCAGCCTGGGCCAGTGGCCGT 3329733 28 100.0 32 ............................ TGCCTGACGCCGATAGCCGGGTTGGAGGCGCA 3329793 28 100.0 32 ............................ TAACTAACTGATTGTGGTGGTGGGCCGTGATG 3329853 28 100.0 32 ............................ ATCCACACCATTACCGCCCGGCAAGTTTTTGA 3329913 28 100.0 32 ............................ GTGACACGATGGGCAGTTCCGGGGACATGCGA 3329973 28 100.0 32 ............................ TCGCGTCGGCCGCATCTGCTGCTTGCCGCCAC 3330033 28 100.0 32 ............................ ACATCAAGCAAGGACAGCATTTTACCGCCGTG 3330093 28 100.0 32 ............................ TCCTGCATCCAAAAATCCATCCATCCCGCTGC 3330153 28 100.0 32 ............................ TACGCAATGCCAGCCATCGGCCAGTGCTCTGT 3330213 28 100.0 32 ............................ AGTGCAAAAAAAGACCGACATCAAGTCGGTCC 3330273 28 100.0 32 ............................ CTTGATCGCTTCAGCAGCGCAGAGCTGATGGC 3330333 28 100.0 32 ............................ TGGATGCGGTTGGGCATGAGTACCCTCAGGCA 3330393 28 100.0 32 ............................ GTGGCCACGCCGCCGCGCAACAACTGCACGCG 3330453 28 100.0 32 ............................ TATGCGGCAGTACAGCAGCGATAGCTACACGC 3330513 28 100.0 32 ............................ GTCCCGCGAGCGATGGGCGCGGGTCTATCCGG 3330573 28 100.0 32 ............................ TGGCAACTCATCAAGCCAGCCGAGCGCGGCGA 3330633 28 100.0 32 ............................ ATCCGGCACACCCTGCAGGCGCTCGCACTCGG 3330693 28 100.0 32 ............................ TATGACATGAGCAATCCACAAGATGTAGAAGC 3330753 28 100.0 33 ............................ TCCTAAGGGGTTACGGCTAACAGCAGTCCTTAT 3330814 28 100.0 32 ............................ GACCAGCAAGCAGTATGTAGGCCGCCTGGAGA 3330874 28 100.0 32 ............................ AACATGGTCAACCCCTCGCGGCCCAACGCCAA 3330934 28 100.0 32 ............................ ACTGTGTAGTCGCCATCCACCGTCGCGCCCAA 3330994 28 100.0 33 ............................ TCCTGTGCGGCGGCGACAAGTCCACTCAGGCCA 3331055 28 100.0 32 ............................ AACACCATCGGCATTCGCCGATAACTCCCATC 3331115 28 100.0 32 ............................ GTGAACCGGCCGCTGTTCGAATGGCTTGGACG 3331175 28 100.0 32 ............................ TGCTGCTGTCGCTCGCCGGCTGCGGTCAAGTG 3331235 28 100.0 32 ............................ GCTCAGCACGGGCCATTTCTTCCGCGCGTAGC 3331295 28 100.0 32 ............................ TGATGCGAATCGGAAAGGAAGGGATTGCTGTC 3331355 28 100.0 32 ............................ TGGCCCAGCGCAATCTTTGCCGCGTTCTGGTA 3331415 28 100.0 32 ............................ TGCTTGCGAGGCGCAGGGTGAATAGGAGGTGG 3331475 28 100.0 32 ............................ ACAACCGCAGCCGACTGCGCTGCAACAACATC 3331535 28 100.0 32 ............................ TGTACAACAAACAGTTCTGGGCCTATTTGGAG 3331595 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTTCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGCGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGGCTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCCGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCAGCGCCTCCACTTGGTGTTCGACGTGGATATCCTCCGGCACCTCGCTAACCTCATCGATCAGCTTCGGGACTTCATGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //