Array 1 44394-45031 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLK01000014.1 Salmonella enterica strain BCW_1908 NODE_14_length_155853_cov_4.28854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44394 29 100.0 32 ............................. GTTTGCAATCGCCTAAAGATTTCACCCGGCAG 44455 29 100.0 32 ............................. CGTTTAAAACATAAGGAGTGATGCGCATGTTA 44516 29 100.0 32 ............................. GCGTTGTGTACGGTGCCGGGAGTAACGACCGG 44577 29 100.0 32 ............................. CCAACTATATGTAATTATTGCCGCCAAGTACG 44638 29 96.6 32 ....C........................ CCTCGACCTTAATTTTTTCGCTGCCCGCCTTT 44699 29 100.0 32 ............................. GGATACCATTAATTTTGATAAATTCAGGCGCA 44760 29 100.0 32 ............................. GGGGGCAGGGAGCCGCCCCAGCTGCACCAGGA 44821 29 100.0 32 ............................. CAAACGTTAATTGATGCCAATTCGTACACAGA 44882 29 100.0 32 ............................. AATTACAGAAACTTGACGGCAAATCGCTGGAG 44943 29 96.6 32 ............................A CAGACGCGTTAGGCGCGTCAATCAACTGCCCC 45004 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATCGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGCAGTGCTGATAAAAAGTAGTTTATAAACAATGATATATATTTA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCTAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGGTGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTTTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53313-54258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLK01000014.1 Salmonella enterica strain BCW_1908 NODE_14_length_155853_cov_4.28854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53313 29 100.0 32 ............................. GGACGAGTGGACATTGAACGTTATACAAACGG 53374 29 100.0 32 ............................. GTAGACCGGTTACGCCAACCCTGCACAGTTCA 53435 29 100.0 32 ............................. GTGCGCAGGGTATTCTCGCTGATTGTGTGACG 53496 29 100.0 32 ............................. CGTTTTGAACTCGCTGCTGATACGATGCAACA 53557 29 100.0 32 ............................. TTTCGTCGAAGCTGGTGGGCGTACTCGAACAG 53618 29 100.0 32 ............................. CACCTCAACGTTTACATCAGCGAATCCAATAG 53679 29 100.0 32 ............................. GACAAAGACCCGGCCCGGTATGCCGATTCGAT 53740 29 96.6 33 .....T....................... ACGCTGCGTAATTCAGCCTCGTCACGTTCACGC 53802 29 100.0 32 ............................. CGGCCAGGTCGACAGCAAAAACTACCGGGCAA 53863 29 100.0 32 ............................. TTTCCGCAGCTTCCGTCAGCCATTGTTCTTTA 53924 29 100.0 32 ............................. GAAACACAGCTCGGCCTGACTTGGTACAACTA 53985 29 100.0 33 ............................. ATATCCCAATGATAAAGGGCGCATTGGGTGAGT 54047 29 100.0 32 ............................. GAATTCTCTAAACAATAGAGACGCAATTACAG 54108 29 96.6 32 C............................ ATCGGGCGGGATATGTGCTGGATTCGTATTAG 54169 29 100.0 32 ............................. CCTGCTATACCAGAGCTGATGATCCAAACACC 54230 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAGGAGCAGGCGGCGCAATTTTTTGCCTGGATTTTATGCTGGCATGATATTGGAAAGTTTGCTCATTCCTTCCAGCAACTATACCGTCATGAGGCTTTAAATGCCTTTAATGAGCCTACACGGTATTATGAAAAAATCGCGCATACCACGCTGGGATACGAGTTGTGGAACTCCTGGCTAAGTGAATGCCATGAATTGTTTCCTCCTTCTTCGCTTTCAGTTCGTAAAAGTAAGCGCGTTATGGCGCTTTGGATGCCAGTCACTACAGGTCATCATGGCCGTCCACCAGAGGCAATCCAGGAGTTGGACCATTTTCGCCAGCAGGATAAAGACGCGGCAAGAGATTTTCTTCTGAGAATAAAAGCGCTCTTTCCTTTAATTACTCTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGCCCAATTTCAGCAATTTTCCTGGTTTATTTCGGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTT # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACCCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7923-7711 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLK01000005.1 Salmonella enterica strain BCW_1908 NODE_5_length_286225_cov_4.0933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7922 29 100.0 32 ............................. TCCGGTCGACTGTGTACGACTTTTGAGCACCA 7861 29 100.0 32 ............................. ACTCCGTAAACCCACATCCGCTCAATAAAGAC 7800 29 100.0 32 ............................. AATAAAAACCGCTGGAGAACGGAAATGAACCA 7739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TTCCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCGCTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGCTCATCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACAATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGGTGGTTTTTTATTATATGAAATCAATTGGTTATATGTTCTTTAATAGTGCGGTATTGTTATTTATGTGTTGGTAAGATGTTTCAGTGTGAAAATGTTGTTTATAGACATAGGGATGGCACTAGA # Right flank : TGATTATTCGCGAATTGAAGAGGCATTCAATGGTGTTCCCAGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGTCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCCTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //