Array 1 484768-483864 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039124.1 Thermobispora bispora strain ZC4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 484767 32 84.4 34 ............T....A..G....A...C.. AGCTAATGGCGCTCCGGGAGGACCCGAACCTCAC 484701 32 100.0 35 ................................ AGTGGCCAACCAGAAGGGCGGGGTCGGCAAAACCG 484634 32 100.0 35 ................................ TGAGGGGGTCACAGGGGCACAGACGAGGCCACCGC 484567 32 100.0 40 ................................ GGGAGGGCGTAGACGCCGCCACGCTCTAGCCAGAGCCCTT 484495 32 100.0 34 ................................ TCCACTCCTCGTCCATCCTGTGACTCCCTTCGCT 484429 32 100.0 35 ................................ GTCGCCGCCACCAAGATCGGCCGGCGCTGGCACAT 484362 32 100.0 33 ................................ CGAGATCTTCATCCTCTGGCACACCCAGCCCGG 484297 32 100.0 33 ................................ CGAGATCTTCATCCTCTGGCACACCCAGCCCGG 484232 32 96.9 33 ...............................G CGCACAGGCGCTGTTGCAGCGCCTCATCACGAG 484167 32 96.9 37 ...............................A TGGCGGCCGACGCCGTGGCTGAGCGTTTCGTGGAGAT 484098 32 96.9 34 ...............................G AGAAGATCGGGCAAGGGCTGCAACCAGTAAGGGG 484032 32 100.0 34 ................................ GGAGGATCCTCGTAACCGAGGACCCGGACTACCG 483966 32 100.0 39 ................................ GGGGTGCCAGCAGCCCAGTCCACGGCGGGCCGGGGCGTA 483895 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.2 35 GTTGCGATCCCTCCAGGGGTAATGAGCGAACC # Left flank : GACGTAGTAGGAGCCACCCTTGTTAGCAAGGGTGTTAGCAAAGGGTCCGGATGATCTAGGAAGCACAAAGGCCCGCTTCCAGGTTTCCCCTGGTCACGGGCCTTTTCATAGATGCGCGGCCGAGAGGACTCGAACCCCTAACCTTCTGATCCGTAGCAGGATCACTGATGTCCACACGCGTCTACGGCTGACATAAACGCCTGCTCAGGAGAGGTGACCGGCCTCGGAGATTCCACAGCTGTCCATGGTCGTCCAGGGTTGTTGTTAGCACCTGCGTTAGCAAGATCAACAGATGGAGAGGCTCGGTTGGGCCGCCGGTTACCGTCGCCATTGGAGGATCTTCATCGCCTCGAGTACGTCGGTGACGACATGATCGGTCTGAGGAGGATAGCGTTGCCTTGGCGTGGTGGACGAGGCGGTCGATCACCGCGGCGGCGACGATGTCATCGCCGAACAGCATGACCGTGGACCCCGGCGATTGGGCAAGGCCCGGCGTCCAT # Right flank : CCAGGGTAAAGGCGCAGGTCACACCCAGAGTAGGCATGCCTGCTGGGCCGTGATCTGCAGCAGACCGGCGGTTATGCAGAAGCGCAGGTCAGAGGGGTCACAGTATGGAATCGCTGTTGCCCAGAGGCTGGCCGATGAGTTCAGTTTGGACGAGATCCGCACCCGGTATGCGGTAGATGAGGACGCTGTCGTAGGCAGGATCGACATGGTCTTTGATCGCTGCGACGAGTCGGCGGTGTTGGGCTTCGGACAATTCACCTTGGAAGACGCTGCGTTGCACCCAGTGGAGATACTGTCGGCATATCTTGAGGATGCCGGGGTTGCGTTCGGCGAGGGTGTCATAGACGAGGATAACGAACACTTATCACCACCAGGGGTGGAAGGGCTTGTACGACGTGCCTTCGAGGCAGAGCCGTACGAGTTTGAGGGCTTCAAGGTGGATGAGTTCTTCGTAGGAAACTTTGCGGCGTAGGGCCCGGTGGTAGACGGTCGTAGCCAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGGTAATGAGCGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 2166422-2161277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039124.1 Thermobispora bispora strain ZC4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2166421 29 100.0 32 ............................. ATCGACCCGCGCACCGCGTTCCGCCAGATCTG 2166360 29 100.0 32 ............................. TTCACCACGGGTACCGGTTCGAACGAGCCGCG 2166299 29 100.0 32 ............................. GCCCTTGACCTGATTTGACACCTTCCGGACCC 2166238 29 100.0 32 ............................. ATGATCCAGGTGTGCGACCTGGAGACCCCCAC 2166177 29 96.6 32 ............................C TATTCCGCTTACCGCTGAGGAGCGGGCGGAGG 2166116 29 100.0 32 ............................. AAGACGCCGGTCTGCGCCATGCCCGTGGTCAG 2166055 29 100.0 32 ............................. ACGCCCTAGCCGTCGACCTGGCCACCGTCGAG 2165994 29 100.0 32 ............................. TGTGACCTAGATCACACAATTTAGGGTTGCAC 2165933 29 96.6 32 ............................T CAGGCGCGCGGCCTGCTCACCCGTCAGCTCCC 2165872 29 100.0 32 ............................. ACCTGGCGCGTCAGCTCCCCGTCACCGGGTCC 2165811 29 100.0 32 ............................. GCCCGGGGCGATGTCCCGGGCCTTTCCCATGC 2165750 29 100.0 32 ............................. GACGGCGCGTACACCAATGAGGAGCGGGACGC 2165689 29 100.0 32 ............................. CACTGCGCGCCATTCGCAAATCGCATTTTCAC 2165628 29 100.0 32 ............................. CGGCTCAGCCGGGTGGCAACTCCACTTGGTAC 2165567 29 100.0 32 ............................. CGCCATGCAGTGATGCTGGACGCGGCTCCGAA 2165506 29 96.6 32 ............................A GCTGGGCATCGGGTGAGCCGCCTGCGGTTGTG 2165445 29 100.0 32 ............................. CTTCCAACCTGTTCGCCGCGGTCTGGTGAAGC 2165384 29 100.0 33 ............................. GCAGGCCGACCATCGCGTGGTCGGTGGACGAAG 2165322 29 100.0 32 ............................. GTCGTCGACCGCAGGAGCCCCGAGGGGCGGCG 2165261 29 100.0 32 ............................. ATGGTGGCCGCGTCCCCGCCGGCGAGGGTGAC 2165200 29 100.0 32 ............................. CGTCACGGACCGGGATCGCGCGCCAGGGTGCG 2165139 29 100.0 32 ............................. AGAGTCATCACCGCAAAAGAGTTCCTGGAGGT 2165078 29 100.0 32 ............................. ATGCCATGGCGTGTTGGCGTCGCAGGCATAAT 2165017 29 100.0 32 ............................. GATCACGACCACGAGCGGCCAAGTCGCGGACG 2164956 29 100.0 32 ............................. GCAGGCCGTCACCGACAGCGGACCGCCGCCGC 2164895 29 100.0 32 ............................. GTCACGTTCAACGAATCCAAGGGCAGCGGCAT 2164834 29 96.6 32 ............................A GCGGCGATATCGGCGAGGTAGCCGCGGCGTGT 2164773 29 100.0 32 ............................. TCGCCGCGTAGCGAACCGGTGTCGATGCTGGT 2164712 29 100.0 32 ............................. TCGTGATCACCAGATTCCCGCTGTACGGCCCT 2164651 29 100.0 32 ............................. ACGCTGTGGCTCCTTGGTTACGACGGCGGTGG 2164590 29 100.0 32 ............................. ACACTACCCGGTTTGGGGGTCGAGGAGTGGCA 2164529 29 100.0 32 ............................. GACCGACGTCCGCCAAGAATCGCAGATTGGTA 2164468 29 100.0 32 ............................. TTTTGATTGCTTTGGATGACGAATCCGGAGCC 2164407 29 100.0 32 ............................. TGGCCGAGTCGCCCGTTTGTGAGCCGTCGAAG 2164346 29 100.0 32 ............................. GACGCCCTGTTCGAGGCGCGCGAGCTGGCCGG 2164285 29 96.6 32 ............................T TCGTCCGGCGATAATCTGTCCCACCATTCCGC 2164224 29 100.0 31 ............................. GAAGCGCGCAGCCGGTTGGACGCGGCGGCCC 2164164 29 100.0 32 ............................. GTTTGCGGCGACCGGGTGAGGAACAGCGCCCA 2164103 29 100.0 32 ............................. CATCCCCTTGGGCATGGACACGCTGTAGGTGC 2164042 29 100.0 32 ............................. CCGGTTGATGTAGACGTGGTAGGGGTTGCGGC 2163981 29 96.6 32 ............................A GTCCACTACGTTCTGCTGGACCGTGCGCTTGA 2163920 29 100.0 32 ............................. TGGCGGCTAGTCGCCTGGTACGGGCCGGTACG 2163859 29 100.0 32 ............................. CCCTTGCTTCCGGCGGCGCGCGCTGCCTCGAT 2163798 29 96.6 32 ............................A GAACCACTGGACCCCGCCCATCGACCGCTCTG 2163737 29 100.0 32 ............................. AGGTTCAGCCGCCGGTCCGTGTCGTCAGCGCT 2163676 29 100.0 32 ............................. CTCCCTGGCACTGATCCGGGCCAGGAGCTCGC 2163615 29 100.0 32 ............................. TGACCGTGGAGGGGTGTACACCAGGCGGCGGG 2163554 29 100.0 32 ............................. ACAGCCATGCGCACGAAAACGAGTGCCGCGAT 2163493 29 96.6 31 ............................C TAAGAAGAGCTCTTGACCGGTAGTTTGGAAC 2163433 29 100.0 31 ............................. GCCGCTCATCCATCGGGAATTCCGCCGCGCC 2163373 29 100.0 32 ............................. GATGCTTTCGGGGTGCTCGGCCCGGTCCACCG 2163312 29 100.0 32 ............................. TGAATGATCTACGATCCGGGGTTTGAGCAGGC 2163251 29 100.0 32 ............................. CTCCCCAGCCGTGAGGAGCTGGAGGAGCTGGT 2163190 29 96.6 32 ............................A CCACCCTTTGGGGTGGCAGACGCCTGTGAAGC 2163129 29 100.0 32 ............................. CGAACCGGATCCGCGCCGAGACCAGCCAAGCC 2163068 29 100.0 31 ............................. CGCCTCATATGCACTGGTCATAGGCCATGTC 2163008 29 100.0 32 ............................. CCCTAGGTCTGCGTCTCGCGCGCCTATATATA 2162947 29 100.0 32 ............................. GCCTTTGACACGATCCTGGACAAGCTCCGGGA 2162886 29 100.0 32 ............................. ACCCGCAACCACCCGCCGCGCGTCAAGAAGTC 2162825 29 100.0 32 ............................. TCCGAGCTCGCCGCGGTCCTGGAGGCCGCCGG 2162764 29 100.0 32 ............................. CGCGACGCCGCCGCTCTGCTGCTCGGCTACGC 2162703 29 100.0 32 ............................. TGCCATTCACCCCGGGGGCCCGGCATTACGCC 2162642 29 100.0 31 ............................. TTTGAGCTCACGATCTCGATCGATGAGATTC 2162582 29 100.0 32 ............................. GTCGCGCTGGCGTGCTCCAAGACCGAGAAATG 2162521 29 100.0 32 ............................. CTGAAGCAGCTGATCAAGGACCGCGACGCCCT 2162460 29 96.6 32 ............................A GATCCCTCCGGTCGGCTGTCTCGCTGTTCTGC 2162399 29 100.0 32 ............................. ACGCTCGGCATCACCAAATCAGCCTGGTTCCG 2162338 29 100.0 32 ............................. CGTTTCCGATCCTATGTGGAGTGCATCAATGA 2162277 29 100.0 32 ............................. CCCTTCCTCGCGGGCCGCACGGATGCGCCGGC 2162216 29 96.6 32 ............................T CCAGGTGTTCACCTGTCGCGTGGTCACATGCC 2162155 29 100.0 31 ............................. TGGTGAATCCAACCCCACCCCTTCATCCAGG 2162095 29 96.6 32 ............................T GCGTAGGCGTCGCCTCAGGGCCTGACGACGGT 2162034 29 96.6 32 ....................C........ CTCGGCCCGCGCGGCCGGGGCCGGGGCGTGGA 2161973 29 100.0 32 ............................. TCCCGGCACCTGTTCGGGCTGTCGGCCCTGCC 2161912 29 96.6 32 ............................C ATCACCCGCGGGCTTAAGCGGCTGGCGATGAA 2161851 29 100.0 32 ............................. CGACTTGCTTGCTGGGTTTGGTGCCGGCCCCG 2161790 29 100.0 31 ............................. CGGGCGGCGCGCCGGCTGGTCGCCCTGTACC 2161730 29 100.0 31 ............................. CGGGCGGCGCGCCGGCTGGTCGCCCTGTACC 2161670 29 93.1 32 ....................A.......T TCGGGTTTGTGACGTCCGCGCCCTGCTCGACC 2161609 29 100.0 32 ............................. CAGGCGCCGGCGTAGTGGGACAGGGGAGACAC 2161548 29 100.0 32 ............................. TACCTGAGCTCGGCGTCCATGCCCTCGGCGTC 2161487 29 100.0 32 ............................. CTGCGCATCTGGGCGGGGGTCGCCCGCAAACC 2161426 29 100.0 32 ............................. GCCGGGATCTCGGCAACGCATTTCCGGCCCGG 2161365 29 100.0 32 ............................. GGATCCCCGTTCTACGACGGACTTACCCGAGT 2161304 28 72.4 0 AC.........A.GT........A.-..A | ========== ====== ====== ====== ============================= ================================= ================== 85 29 99.0 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : ATCGAACGAGGGTGCCCGGGTCACCGATCGGAGCGCCGATGTCGTCCACCTCTGGGACCCCCAGGCAGGCGCGCTCCCGGCCGGGGTGAACTACGGCTTCGATGCCGGTTCAGTGGAAATCTCCGATCTCGACGAATGGGAGTAGCCCGTGGCATCGATGGTCGTCATCTCGACGACGGCGATTCCGGACCATGTGAGTGGCGCGCTTTCACGCTGGCTCATCGAGCCGACCCCCGGCCTTTATGTTGGGACGATCTCGGCCCGGGTGCGCGAGGAACTGTGGTCAGCGGTCAGCGCCAGCGTCGGCGACGGCGCCGCCGTGCTCATCCATCCGGCTGATACCGAGCAGGGGTTCGCTCTGCGTACCGCAGGTCAGCGTCGTCGCCATGTGGTCGACTTCGACGGCCTTCAGTTGATCAAGTTCGTGGCCAGCGCCACGGAACCGGCCCCGTGCTCCTCGGAAACCCATAGTGAAAATGTGAACTAGCAGGTGGCGAAGG # Right flank : CAAGGGTCCGGTTCAAGCGCGCACACACGTAGGGATACGCCTGGATGAAAACATAGGCTGACCGGATTGATCCGCTATGTCGTACTGGACGACAGGGCGGCGTGGCACGCCGCCACGCCGCCGTAGGTCGTGTTCGGTGCTCGTGGTCAGCTCCGGGCCGGGACCGGTGACACCGGGGCGTCCCAGTCGATCACGTACCGCTGCTCGGGCGCGAGCATCCTCTCCGGGTTGAGAACGGTCTTCAGCATGACCCGCATGAGGACCGGCATGATCGCACCGGCGATGGGGCCGGGGGCCTTGGTGCGGTTGATCCGCGCCGCCCGGGCCGCGATCCCCTCGACGCGGCCGCGCCGCAGCCGCTCGTACTCGGCGAACGCGGAGGCCACGTCCGGCAGGTCGCGCAGGCAGCGGGCGAGCTGCACCGCGCTCTCCACGGCGAGCGAGGCGCCCTGTCCCGAGCTGTTCGAGGGCGCGTGGACCGCGTCGCCGACGAGCACCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2175402-2181221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039124.1 Thermobispora bispora strain ZC4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2175402 29 100.0 32 ............................. CCCTTCGCGAGCACATCGACGCCTTCACCGCC 2175463 29 100.0 32 ............................. AAGGCACATCGCCACGTCTCAGCGTCGAGATC 2175524 29 100.0 32 ............................. GCCTCTTCGGTGCTCTTCGCGATTCCGGTACG 2175585 29 100.0 32 ............................. CATTGTTTGAGCTGAAACCGCGTTCCACGACG 2175646 29 100.0 32 ............................. TCGCCCTCACCGGTGGCGGGGTGCCCGGCGTC 2175707 29 100.0 32 ............................. TCCCATTATCCAGAAGGCGGTAAGGGGTTTCG 2175768 29 100.0 32 ............................. ATTGGCCCGTTTGAGTGGTCGATCACGTCGAA 2175829 29 100.0 32 ............................. GTGTGGATGGCGCTGGTGTACGTGTGGAGCGC 2175890 29 100.0 32 ............................. CTGGTCGATCAGCCGGGACACGAGGCGGCGCC 2175951 29 96.6 31 ............................T CGACGGCTGGGCCGTCGGAGTCGCCGACCCG 2176011 29 100.0 32 ............................. TCCTCGACGTCCGCAGTGCCTGAGCTGCACCC 2176072 29 100.0 32 ............................. GCACCGCCAACGCGGAGCGCGGGCTGGAGGCG 2176133 29 100.0 32 ............................. GTGTGCTTGGCGCGAACCTCGGCGTCCCGGGC 2176194 29 100.0 32 ............................. TCCCACACTGCTGGATCATGGGGAGGACACTA 2176255 29 100.0 32 ............................. GATCATGTCGTCACCTCGGCGGTGGCCTTGTC 2176316 29 100.0 32 ............................. CTCACTGAGCGTAACGCTGCCTTCCTCCGTGG 2176377 29 100.0 32 ............................. GTGTACTGGGATGCCGCCGACGGCCAGATCCA 2176438 29 100.0 32 ............................. GTAGGTGCGTGCGAGTCGGCGGCGTAGGTGTG 2176499 29 100.0 32 ............................. TACTCTGGCAGCTTCGACGGGTCGGACGGCAG 2176560 29 96.6 32 ............................A AGGCCCCGCACCGTGTGGTGCGGGGCCGTGGA 2176621 29 100.0 32 ............................. CTCGACGGTGTGCGCGGGCTGCCGGAGCTGAT 2176682 29 100.0 32 ............................. CTCGCATGATTGGCCTCACCGTGGCGGACCCG 2176743 29 100.0 32 ............................. CTCGACGGTGTGCGCGGGCTGCCGGAGCTGAT 2176804 29 100.0 32 ............................. GGGAGAGACATGCGTATCACCGTCAGCTGCAA 2176865 29 100.0 32 ............................. GAGTCCCGGCCCGTGGACGCCGAGGTCGTCGA 2176926 29 100.0 32 ............................. CTGGAAGCGTACACAGCGGAGTTTGTGGCCGG 2176987 29 100.0 31 ............................. GGGACGGCGGACGCGATCCCGACGTCGATCC 2177047 29 100.0 32 ............................. CGATCCCGGCGGTCAAATGCCGGCGTTTCTGT 2177108 29 100.0 32 ............................. GCTCGAGTCTGAGCGCATGACGGTACACATGC 2177169 29 100.0 32 ............................. TTCCAGGACGTGCTGCCAACGTGCCGGGAGAC 2177230 29 100.0 31 ............................. CATCGTGGCGTCCGACTCGGCGTAGGCGCGC 2177290 29 100.0 32 ............................. TCCCACCACGTCACCGTCCCCCCTCCTCGCCC 2177351 29 100.0 32 ............................. CGGGCGCGGCAGCGCTACGAGGAGACTGCGAG 2177412 29 100.0 32 ............................. CCAGGCTGCTGGGGCGTGCCACCCGGTGGGAC 2177473 29 100.0 32 ............................. CCGCGCCGGTTCGCCCCGCGGCCGTCCGGTGT 2177534 29 100.0 32 ............................. GTGCACGTCCACACGCGCCACGTGGTGTCCAT 2177595 29 100.0 32 ............................. GCTGCCGTCGTACTCTCCGGCTACCCGTCACC 2177656 29 100.0 32 ............................. GCGCTCCGAGACCACCTTCAGGCCAACCCGGG 2177717 29 100.0 32 ............................. GGCGTCCCGTCCTCGTTCACGGCGCTCATCGC 2177778 29 100.0 32 ............................. GCCTCCACCGCGGCGGTGATAGAGGGGAAGCG 2177839 29 100.0 32 ............................. GTCGCCAAGGGGTACCGCAAGGGCTTGATGGC 2177900 29 100.0 32 ............................. TCGCCGGCCGTGACCCGGGACATGGCCGTTTC 2177961 29 100.0 32 ............................. GCCCGCGAGCTGGTGGGCATCTTCAAAGCGCC 2178022 29 100.0 32 ............................. GCGTCCTGACCCTCGTCGAGCTCGCTCTCGGC 2178083 29 100.0 32 ............................. GTGGGAGTCTCCAGGCTGGACTCCGCGAAGGT 2178144 29 100.0 32 ............................. TTGCCGTTGCTGCCGAGGCTGACCAGCTGGTT 2178205 29 100.0 32 ............................. CATCCCCTTGGGCATGGACACGCTGTAGGTGC 2178266 29 100.0 32 ............................. CCCATGCTGTCCGGTGCGATGTGCCGGTAGAT 2178327 29 100.0 32 ............................. CCCGTTGCTCCCAAAAAAACACGCACCCCGGG 2178388 29 100.0 32 ............................. GATCATCTGCGCGCGCTGCAGTTGCGCTGGCG 2178449 29 100.0 32 ............................. CTGGTCGATCAGCCGGGACACGAGGCGGCGCC 2178510 29 100.0 32 ............................. GTTGTGCGGGTTCCCCGGGATTGGTTGCATCG 2178571 29 100.0 32 ............................. TACTGCGTGCCATTCGCAAACCGCGCTTTCAC 2178632 29 100.0 32 ............................. TACTGCGTGCCATTCGCAAACCGCGCTTTCAC 2178693 29 96.6 32 ............................T CCTGGGTGTCCGCAATCTGTGGCAGGTCGGAC 2178754 29 100.0 32 ............................. GACAGGCACCCGGCGATTTTCGAGGCCATGAA 2178815 29 100.0 32 ............................. CTGAACGGCACATCCGAACAGGCCAGGTAGAT 2178876 29 100.0 32 ............................. GCGACCTCGTTGGTGGCCGCGGGGCCGAGGTT 2178937 29 100.0 32 ............................. CCAATGAGCCAGTTGGGGAGATCGCGCGTGAG 2178998 29 100.0 32 ............................. GCCCGGGACATCGGCCCCGGGCCTTCGTGCTG 2179059 29 100.0 32 ............................. GCGGTACGTGCCGACAAGGCACGTACCGGACC 2179120 29 100.0 32 ............................. CCGGAAATACCAGAAACGCCCGGGTTTGCCTG 2179181 29 100.0 32 ............................. GTGACCTTGACGTTGCCGTCGCCGAGAAGGTC 2179242 29 100.0 32 ............................. TCGTCACGGATTTCCTTGTATGCGTGCCCGCC 2179303 29 100.0 32 ............................. ACTTTCACGATCTTGAAAAGTGTGACCTAGAT 2179364 29 100.0 32 ............................. TCCTCACAGACGCCCACGTGCACAGGCACATC 2179425 29 100.0 31 ............................. CTCAACCAGAGAACCCGATCCTTTGAGGTCC 2179485 29 100.0 32 ............................. CAGGCAAACCGGCAGCTCACTGGCATTGACTA 2179546 29 100.0 32 ............................. GCCCAGGAGCGCGGCCACTACCTCGAGCCGGC 2179607 29 96.6 32 ............................C CCAACCCCGTGCGGGTGCCCGGCGCGGATCCT 2179668 29 100.0 32 ............................. CGTGCCGAGCACGGCGGCGGCGACCGGTGGGG 2179729 29 100.0 33 ............................. GTCTGGTTCCGGGCCCCTGGCGTCGCGTGCTAC 2179791 29 100.0 32 ............................. CTCTCCACCGCGTTGATCCGTGAGAACCAAGC 2179852 29 100.0 32 ............................. GCTGCTAGCCGGCACGGCGGCGACCCGGACGC 2179913 29 100.0 32 ............................. CGGCTCAACCGGGTGGCAACTCCACTTGGTAC 2179974 29 100.0 32 ............................. GATTCGAGGCGACCTGGCCGCCCGGCTCGCCG 2180035 29 100.0 32 ............................. CTCCTGCTCGCCCGGCACGCCGCCCCCGTGGA 2180096 29 100.0 32 ............................. TACACCCCCAGGTTCTCGAGGGTCTCGGTGCC 2180157 29 100.0 32 ............................. GGCCCCCACGTACACCGCGGATCATGTCGTCA 2180218 29 100.0 32 ............................. GCAGGGGCTCGGCAACTTCCTTGCCAGTGTGG 2180279 29 100.0 32 ............................. AATTCGCGCCTAATGACGTCACCGTAGGGGAG 2180340 29 100.0 32 ............................. GCCGCCACGAGCGCCCCCGGCACCGAGACCAC 2180401 29 100.0 32 ............................. CTCATCCACCGGGTCCGCCGGCCGCTCCTGCG 2180462 29 100.0 32 ............................. CTCAGGCGTTCCGTGACGGCATGAGCATGCTG 2180523 29 100.0 32 ............................. GCGATCGGGACCACCGGGGCGTCCTTGGTGGT 2180584 29 100.0 32 ............................. TCGCCGCCCGGGCCGGCATCGCCCACGCCACC 2180645 29 100.0 32 ............................. TGCACGGTGCGTTCGTACACCCGGTCTACGGG 2180706 29 96.6 32 ..................A.......... GTAGGCGGCGAGAGCCGCCTGCTCGCCCAGGG 2180767 29 96.6 32 ............................T CCGGACCAGCGTGCGCGACCGGATCGGCTGCC 2180828 29 100.0 32 ............................. GCGGCGGACAGCTCCATCTCTGTGTCCAGCTC 2180889 29 100.0 32 ............................. TCGGCGGTGGTGCCGCCGTTGGCGAGGTGGTC 2180950 29 96.6 32 .......G..................... GCGACCGCTCAGCCCGCCAGCCCCTTCACACC 2181011 29 96.6 32 .............G............... AAGACCCTGCCCGGGCCGCAGACGAGCTATAG 2181072 28 93.1 32 .....-T...................... CGCGACGCACGTAGTGAATGGCAGCGTGTCAT 2181132 29 100.0 32 ............................. TCGTTGGCTACTCTGCGTAACCGCTGCCCGCT 2181193 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 96 29 99.6 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : GATACCCGGTGAGCCGGGCGAAACCGTCCGCGTCCAGGGCCTGGAAGCAGGCCATGACCTTGCCGATGTCGTGGAGCCCGGCCCAGGACGCCAGCAGGGCCCGGGCATGGTTCTCGGTGGTGCCGAGCCCATCAGTGATCACTGTCCGTACCCGGGGCGGCACGTACTCGTCCCACAGCGCTTCCATGGCCGCTGCGGCGTCCAGCAGGTGGCAGACCAGGGGGTAACGGTGCCCGTTCAGGCCACGCGACTTACCCCAAAGGGCGAGATCGACATCGAATCGGCCGGTCACCGCCGCCTCCTGGTCTGTAAGTCAGTGGTCAACGGTTGTGGTGGGAGGTCATGCCTGACCACCATCTCGATTACTGTAAACTCGCCGACCGTCAGATCGCAGGAAATTCCGGAAACTTCGTTTGAACGGTGAAAGGCTGCAACACGTGCCAGCTACCGTCATGTCCAGGAACTGTGCATGGCGGGAGTAAACTTGCAGGTCGCGAAGG # Right flank : GATGTCGGGACCGTCGAAGGTGACGATGTGCGCGTCCTCAACTCACCCCACGTGCGTGAGGACAACGGGAGAACGACGGGCTGCTCCGGGATTTCGCCGGAGTCACACCACGTCTGTGGGGAGGCGTGGACATATCGTTCACGAATTGCCGCCGATCGGCTCACCCCACGTGCGTGGGGTGCTCGCGCAGCGTCTCGGAAAGCTGGCCTGGTTGGCATCCAAGGCGCTCTTGCCGGTCGGCCGCCGGCAACGTGGCGCCTGCGGCCGACCGGCAAGACAGAGCCCAGGAGCAACCGGAAAATCCGGCCGGACGTCTGAGCGGAGGTCACCCGGCAGGTGCCGTCACACGCTCCAGCGCGCCGTCGCCGGTGAGCATCCTCAGCACCTGCAACGCCGCACCGCGCGAGAGCAGGCCGTGGTGGCGCTCATTCCTTCGGTTGCGCAGGCACCCGTAACACGAGGTCTCCTCACCGCAGTCGCACTGCGCCATCCGGTCGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3165733-3168812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039124.1 Thermobispora bispora strain ZC4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3165733 29 100.0 32 ............................. GCTGGCGACACCTGACCGCTCCAGGGTCCCCT 3165794 29 100.0 32 ............................. CAAGCCCGGCGAGCCGACCTTGACTGGCCCCG 3165855 29 100.0 33 ............................. CGGAACGGGCCGAATGCGCCGCGCTGCTGGCCG 3165917 29 100.0 32 ............................. GGCACCCTGCGCGGAGTGCGGGACGCGGCGAT 3165978 29 100.0 32 ............................. CTCACCCGGCCCTCTAGTAACCAGCCGGAAAC 3166039 29 100.0 32 ............................. TGCTCCGGCGTGACGCTCGGATCCAGTCGCAC 3166100 29 100.0 32 ............................. GACACGCGACATGTGGCCTCCCGGAAAAGGAA 3166161 29 100.0 32 ............................. TGGCGTCAGGTTCGTGTTTTCGTCCGCGAAGA 3166222 29 100.0 32 ............................. AGCGGGGCGACGATGACGACCCCGAGCGCATA 3166283 29 100.0 32 ............................. GCTCGGGCAGCGTCTCAAACACCGGGTCAACA 3166344 29 100.0 32 ............................. TTCTGCACGAAGGTCGCCACACGATCCCGGAT 3166405 29 100.0 32 ............................. ATGCGCATGCTGCCGAAGCACCACAGCGAGCG 3166466 29 100.0 32 ............................. TCTAAGAGGGACTATAACGGTATAGAGCGTAG 3166527 29 100.0 32 ............................. GGCACCAGTCCGCGTATCGACACGCGGAACGG 3166588 29 100.0 32 ............................. CAGCCCACCGTGCACATTGTCGGCATTCGATC 3166649 29 100.0 31 ............................. CGGGCACCCCACCCTTAACGGGCGCGCCGCG 3166709 29 100.0 32 ............................. AACCTCGCTCCAGAAGGGTACGTCTTCAATTA 3166770 29 96.6 32 ............................T CATGAGTGAGATGATCTCGTCATCAGACAGTC 3166831 29 100.0 32 ............................. CCACCCACGGTCTCGGTTGTATCGCCCGCCGA 3166892 29 100.0 32 ............................. ATGTTGCCCGCGGTGCGACCAAGGCCCTCGAT 3166953 29 100.0 32 ............................. CTCACCCGTCGTCTCCGGCAGCGGCTCGTCGG 3167014 29 96.6 32 ............................T GCGCGCGGCCCGTATTTCCCACCCCGAGCTAC 3167075 29 100.0 32 ............................. CGAGTAGGGCGGCCATGCGATAGGCGGCGTGA 3167136 29 100.0 32 ............................. CTGATCGACGGCATGGAAGTCCTGCCGCTCGA 3167197 29 100.0 32 ............................. GCGCCCACGCCATCGTCATCCGCGCCCGCGTT 3167258 29 100.0 32 ............................. CGCGCCGACCTCTGGAGGTTCGCGGCGAGATC 3167319 29 100.0 32 ............................. GGTTCGGCCAGGCTGCCAAGGACTGGTTCGCG 3167380 29 100.0 32 ............................. CTTCAGCCCGGCGTTCAGGCGCTTCTGGAAGC 3167441 29 100.0 32 ............................. CGCTCCTCGGTGCGCCGGGCGGCCAGGGCGAG 3167502 29 100.0 32 ............................. CAATGCAGACGATGTCCGGGTCCGTGTCCAAG 3167563 29 100.0 32 ............................. TCGGACCCCCTCCAGGTTCTCTGGAGAGAGAA 3167624 29 100.0 32 ............................. AGATCCTCAGCGGAGGTGCATGCCGAGTACCC 3167685 29 100.0 32 ............................. TCAACGATCCTCTCGGTCTCCATGACCGTCAT 3167746 29 100.0 32 ............................. GCTGCCCCCGAGATCCGCCTCTACGAGGACAG 3167807 29 100.0 32 ............................. CGGTTGATACGAGCGAACGTCCGCCCGTACCT 3167868 29 100.0 32 ............................. TCGACGACGTCATCACCCCAGATATGCTCAAA 3167929 29 100.0 32 ............................. ACCGTCGTCAAGTGGATCGGCGACAAGGTCAC 3167990 29 100.0 32 ............................. TGCACCTGTACCAGGGAGCCGGGGAGGGCGAG 3168051 29 100.0 32 ............................. TGCGGCTGGCCCGGTCTTCCTGCTCGACGACG 3168112 29 96.6 32 ............................T CCCTGGCATCCGTTCCCCTTGCGAGCGCAGCG 3168173 29 100.0 32 ............................. CGCTCCTCGGTGCGCCGGGCGGCCAGGGCGAG 3168234 29 100.0 32 ............................. CAATGCAGACGATGTCCGGGTCCGTGTCCAAG 3168295 29 100.0 32 ............................. CTGTAGGAGCTCTTGGCCTCAGGGTCGCCGTT 3168356 29 100.0 33 ............................. ATCCCCGAGGACCCCATTGACTACCCCGGGCCG 3168418 29 100.0 32 ............................. CGGCGCACCTCTTCGATGTCGTCCTGGATGCG 3168479 29 100.0 32 ............................. GCGTCGCCCACCCCAAACAGCGCGAGGGTCAG 3168540 29 96.6 32 ............................A CGCCGCTCGTGGAAACGCTGCCCGGCGCGCCG 3168601 29 100.0 32 ............................. GCGACCTGGACGTCACCCGGGTCGCCCGGGTC 3168662 29 100.0 32 ............................. TGCTCAACCAGGCCGAGCCGGATATGGAGGAG 3168723 29 100.0 32 ............................. GGGTCCGCGTGGTTCTGGCACCCCTATCTGGT 3168784 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GAGCTGGGCTGCGGAGACATGGCCCTCAGCGGGAAATCAAGGAGGTGGACTTCCCCCGCCCACGGGGATGATCCCCAAGCCACGGGCAGCGGCGGAAGCTGCTGGAAGTGCTCCCCGCGCACGCGGGGACAATCCCCGCCGGCACGCTAGGTGGGTCGCCTGTATCTGATCTTCCCGTCTGCCGTTGATCCGCCCTCAGGGGCAGTAGGCCGGCGTCGAAGGGTTAAGCCCGGCTGTGCCGGCGGGGCGACCGGCGCACGTGGAAGGTCACCGGGGACAGGTACACGCAAAGCCGGGGTCCCGTAGCAGCAGGTCTACTAGCTCCTCCGAAGTTGGACGGCACGCGAGACGATCGAGGGCTTTGCAGTAGCATCATTGAGCATCAGATAAATACACTAACTACCGAAGGGCACTTTTTATCCCAAATGTACTGTATGCCCAAATTGGCGAAAGTGGTCGAGACTCGCACCTGCGCGATCTAAACGCGCAGGTCGCGGAGG # Right flank : CCCGCCAGCACACCAAGGTAGGGCGCGGCCCGTGTCTGACTTCCCGTCTGCCGCCGACCCGCCCCAGGGGCAGCGGGCCGGCGACGAAGGGTCGAGCCCGGCTTCGCGTGTCCCTGTCCCCGGTGACCTTCCACGTGCGCCGGTCGCCCTGCCTGCGCAGCCGGGCTTGACCCGCAGGAGCCGGTCTGCCGGGCTTTGCCCGGGTCGATGGCAGGCGGGAAGATCAGGGCCCCCGCACGCATGCATCGGCGCCGCCGGAACGCTTCTTCATGATCTTGTGGGCTTCCCGGAGCCGGAGGCCCCGGGGTTCGGGGCAGAGCCCCAATGCCCACGCCGGCCAACGTCGCGCGCTTAAAGGATGAGGCGCGCGCCCGCCGAGGCGGGACCGGCCCGGAAGAGGCCGCACGCCCGCCGTAGGCGGGCGCGCGGCCCAAGGATGGCTCAGCTCGGCGCGCGCAAGTTGGCCGACCGTGGCTCTGAGGGGCGCACCGAACCCGTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //