Array 1 714587-713695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029829.1 Azospirillum ramasamyi strain M2T2B2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 714586 35 91.7 30 ....A.A-............................ ACCCGACGCCCGCACCTTGAGCACCACGGT 714521 36 100.0 30 .................................... GGGGCCATCACGAGACCGGACGTGGTGGAC 714455 36 100.0 30 .................................... CTGCACGGCGCGTACCTGCTTCTCATCATG 714389 36 100.0 30 .................................... TAAGCGCCGGTCCAAGTCGATCAAGCCAGA 714323 36 100.0 30 .................................... CCCGGTCCACAACGGCAATGACTTCCATGA 714257 36 100.0 30 .................................... TCGCCCATGACGCGGGCCGCTCGGCCGGCG 714191 36 100.0 30 .................................... TGGTTTTGTTCATGATTTGCCATGCGTGAG 714125 36 100.0 29 .................................... GCCGAACGCATCGACACCATGCCCGTCCA 714060 36 100.0 30 .................................... GCAAGTTCGTTCAGCGTGTCGAGCGTCGTC 713994 36 100.0 30 .................................... GAAATCTTGTCGGTCATCTGTCTGTCTCCA 713928 36 100.0 30 .................................... TGTCCAGCGGCACCACCATCGCATGGATGT 713862 36 100.0 30 .................................... CCGGAACACAACGTGTGGAACTGGTGGACC 713796 36 100.0 30 .................................... GCCCTTCGGTGCGGCCCAGCGCATTGTAGT 713730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.4 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : AGAGGCGGCCGCCCGAGCTTCAGCTCTGGTGAATTATCCGGTTTGGGATTGGACAATCGCGAGGAGGTATCTGCGATCGCCACATCACGTCGGGCGGCAAATCGTGGATCGTGAACCGACGATTGAACGACATGCGCTATCGTCTGCCGGCAGCCACGGAAATATGGAGAAATCAGAAGTGGGGAGAAACGCGTTAGAGCGGATTTAACTGCTAAATCAACGCTCTAACGCAAATCAATGGCGGACCCGACGAGATTCGAACTCATGACCTCTGCCTTCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGTCCATCGCTGGTGGAGGCGCAACATAGCCCAAGGCATTCGGAGACGCAAACACAAAAATCACTGTTTCCAATGCTTCTTTCAGCCCCCCTGCCCCGCCGCTACAATGTGGCGCGGTCCGCCGTTGGCGTCGCTCGACGCCATGTGGCGAAGAAGCTCCTCTGGCCTGGACAACACACGAGAAGCTGAA # Right flank : AGGATCCCAGGTAACTCACTGAAACAAAAAGGTTATCTGGGTTTCTTTTCTGAAAACCCTCCACGGAACGCCCGTCAAAACAGCTTGAACTGTTCATATTTTGCGGCAGGTTCTTGTTTCGTGCGCGTGTCGAAGCACACCATCGTCTGATACTGACGGTCGGTGAAGGTCAGGATCTGCACCTTTCCCCGCTTCGGCAGGTTGGACCTGATCCGTCCGATTCGCGCCTCGACCTGCGGAGCGCCGGCGCAGAAGCGCATGTAGACGCTGAATTGCGACATCTCGAAGCCCTCATCCAACAGAAAATTACGGAACCGAGTCGCCGCTTTCTGATCGGCTTTGGTGACGGTCGGCAGGTCAAACATCACCATCATCCACATGAGCCGATACGCGCTGAGTGACATGCGCGCCCTCCTTGGCTGACGGACCACGAATTATTTCGAGGGGAAGCGGCGACAGCGGAAGGTCGAGAACCTGGCGTTCGCCGGAAAGAACCTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2615054-2621797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029829.1 Azospirillum ramasamyi strain M2T2B2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 2615054 32 100.0 35 ................................ AGGCCAGACAGGACGGCGCCGACGTCCGCTTGGCT 2615121 32 100.0 35 ................................ ACCATTCCAGTTCGTCGCTTGCCTTGGCCGGACGG 2615188 32 100.0 35 ................................ CGATCCCGCAGAACCTCAACCCCGACACGGCGCGC 2615255 32 100.0 35 ................................ ACCTTGGCGGCACACTCGACATACGACGCGCCGCG 2615322 32 100.0 33 ................................ AGGAACTTCAGCGCGTGCATGACGTGGTCGATG 2615387 32 100.0 34 ................................ TCGACCATGGCAAGCTCCTTCGCCATGTCGAGAG 2615453 32 100.0 35 ................................ ATTGCTGGTCTCCTTGGGGCAAAAGAAAAGCCCGC 2615520 32 100.0 35 ................................ AGGACGTGCTAGAGGCCGAAGGAGTGGAGTTCATC 2615587 32 100.0 34 ................................ ACCATCACCGACGCCGGCCGCGCCGCCCTTGCCA 2615653 32 100.0 35 ................................ GACTTCAAGCTGAAGCCGGAGGCCGATTACCGCAA 2615720 32 100.0 35 ................................ TGGTTCACGTCGATCCGGTCGCCGTAGACCCGAGC 2615787 32 100.0 34 ................................ AAGCGCGATGGCGCTCCAGGCTGCGTCCATGTGG 2615853 32 100.0 35 ................................ GGACGATCACCCGGAACACGCCGCCCGCCTGCAGC 2615920 32 100.0 35 ................................ GTTCCCGGATGGATGGACTGATGTCCCGTACAGGG 2615987 32 100.0 35 ................................ AGCTTGTTGTTGCCCATCATCAGGCGGTCGCGTTC 2616054 32 100.0 34 ................................ CCTTCATTCAAGTTTGTGTCGGTGACACTCCGCG 2616120 32 100.0 34 ................................ TCCGTCGCGCTCTTGGCTCCACGCTTGGCCTTCG 2616186 32 100.0 34 ................................ AGCGCATGACTGATCGAGGCTGCGAGCATGGTCT 2616252 32 100.0 35 ................................ GGCAGGGGGCGCGTCGGGGCGCTGGGGGGATCGGG 2616319 32 100.0 33 ................................ GGCCCTTGGTCAATCGAGACCGGGCATCGTCTG 2616384 32 100.0 33 ................................ ATCGACGCCACCGTGTCGGCGACAGAGGCGACA 2616449 32 100.0 34 ................................ CCCGGCATAGTGCTGGCAGCGCGCCACCAGGATC 2616515 32 100.0 35 ................................ GCCTGCCACGCGACCACAGCGGCCTTGGTCAGCGG 2616582 32 100.0 35 ................................ CATGCAGCACCGGTGCAGGTGATGAAAGCCCACTG 2616649 32 100.0 34 ................................ CCTCGTTTAGCAGCGTCCGATACAGGCGGAACCG 2616715 32 100.0 33 ................................ AGGTTGAACGAAATGGTGCCCGCCAACCCGGTC 2616780 32 100.0 34 ................................ ATCCGGCACGTGAGACCGGAGCAATGACATCTGC 2616846 32 100.0 35 ................................ TCCATGAAGGTGGTGAAGCGGTGGGAAGCGTCGCG 2616913 32 100.0 34 ................................ CACTCTTCGACCGTCCAGCCGTCGTAGCCAACGG 2616979 32 100.0 33 ................................ ATCGCATCGCGGACAATCTCCTGCTGCGCGTTG 2617044 32 100.0 33 ................................ TCCGGGTCGGTCCAGCAATGCGGGCGGTCGAAG 2617109 32 100.0 36 ................................ CTTTGCCGCGCTTGTCCCCGCCACCGCATTATATCG 2617177 32 100.0 33 ................................ AGGACCTCAGCAACAGGGCTGTGCGAGGCGATT 2617242 32 100.0 34 ................................ TTGCCTTCAATGGAGAGCGTAAGGTGCCGCTGGA 2617308 32 100.0 34 ................................ AGCGCAACCGCATTATGGCAGGCCCCGCTCGCGC 2617374 32 100.0 33 ................................ CCATGAAAAAATACCAGAAATCTTGGAAGAATG 2617439 32 100.0 34 ................................ ACCGCCGCCGAAGCCCGGTCATACATCGACGTGG 2617505 32 100.0 34 ................................ CTTCGGGAAGCGGTTTGGTTCGGTTGGCGTGGGC 2617571 32 100.0 33 ................................ GTTGCTGCCGGCCTGTCGGAAGGCGCCGCCCGG 2617636 32 100.0 34 ................................ TGAGCGATTGGGAGGGGCGCGGCAAGCTGCGCAT 2617702 32 100.0 35 ................................ ATGCGCGGTCGTCCTGTCCAGATCGTCAAGACCAC 2617769 32 100.0 35 ................................ TACTGACTGAGATCGGAAGCGGAAGCCGTACTGGG 2617836 32 100.0 33 ................................ ACGCCGCTGTCGATGACCAGGGAGCGCAAGGCG 2617901 32 100.0 35 ................................ CATGCAGGCCACCATTGCCAAGCTGGACAGCCTCC 2617968 32 100.0 34 ................................ CGCCATTCTTGCGTCAGCCATTGCAACCCGCGCG 2618034 32 100.0 35 ................................ CATGCAGGCCACCATTGCCAAGCTGGACAGCCTCC 2618101 32 100.0 36 ................................ GATATCAGCGCCCGGGCGACCACGGCCGAAATCGAG 2618169 32 100.0 36 ................................ CCACTTGGCCCACCCCATGCAATTGTCGTCCGACCT 2618237 32 100.0 33 ................................ AGCCGGCGGGCCGCGGTCTCGACGGTCATGGCC 2618302 32 100.0 34 ................................ ATGCCTCCACCGCCCGACCGGCTGCGTCCGAGTG 2618368 32 100.0 35 ................................ GTCGTGCAGCCGCTGGAGGCAACCGATGCCGACGA 2618435 32 100.0 34 ................................ AATGCAGCGATGGTGTTAACGCCGCCGCCCTGCA 2618501 32 100.0 35 ................................ ACCGCCGTCTCGAAAGCAGACTGCTTGTTGTAGGC 2618568 32 100.0 35 ................................ TCGAACATCGAGCATCTGGACCTCGCCCACTACAA 2618635 32 100.0 35 ................................ AAGGCCTACGGCATCGGTGAGGTGCTGGCCGGCAC 2618702 32 100.0 34 ................................ CGGTGCCTGGGCGACTGGTGCCGGCACGACCACC 2618768 32 100.0 34 ................................ TGAGCGATTGGGAGGGGCGCGGCAAGCTGCGCAT 2618834 32 100.0 34 ................................ TGGTTCCGCATCGCGTTGGCGATAGCCTCGGACG 2618900 32 100.0 33 ................................ CATGACCACCCGTGGAGTTTCGTCACACTGATC 2618965 32 100.0 35 ................................ GGCGTCGATGCGCTTGTGCCTCCAGCACCCTCCAG 2619032 32 100.0 35 ................................ GTTCGTCGCAGTCATGTCAGCCCCACGATTGGCGG 2619099 32 100.0 35 ................................ GCCAGATCGTAGTCGGACAGGCTCATTGGACGGCC 2619166 32 100.0 36 ................................ GTGACCGGGTGAGTGCTCCACCATGCGCGGGTGAGA 2619234 32 100.0 34 ................................ TCCGTCGCGGTAAAGCTCCAACTCGTTGAAGGCG 2619300 32 100.0 34 ................................ ACAGACGGGGGTTCGCAGGGTCATCAACCCGACT 2619366 32 100.0 34 ................................ AGCGCCTCAATGGAGCCGTTGAAGCCGATGGAGG 2619432 32 100.0 35 ................................ AGTCCCGGCGTGCTGCCTGCGGCTCGTCGGTACTG 2619499 32 100.0 34 ................................ AAGCTGTGATGGTCGCGCCCTACCGCCCAACCAT 2619565 32 100.0 34 ................................ GGCGGCGGACCAGCCGGGGATGGACGATAGAGCC 2619631 32 100.0 34 ................................ TGCGCCGGAGCGGCACCCTGCTGACCGCTTGAGA 2619697 32 100.0 36 ................................ CTGGACGATGCCTGCGGCGGTTTGCGCGGCGGCGGT 2619765 32 100.0 43 ................................ GTCAGAGCAGGCTCGGACGGCGCCACGGCTGACCAGGGTGCGG 2619840 32 100.0 33 ................................ GTCAGCAGCATGAACGTCGGCAGCGGCGTGCCA 2619905 32 100.0 36 ................................ GGTGTATTGGCCGCTCCACCAGTTGTCATCCTCCCA 2619973 32 100.0 34 ................................ CCGCCCGCCTGATGGTGATGGCGGAGCGCATTGT 2620039 32 100.0 35 ................................ CGAACCATGGCCGCCAATTCGTTGAAGGCGGCGTC 2620106 32 100.0 35 ................................ GCCTCCAGCACATGCCGGCTCCCACCGTTGGGCGA 2620173 32 100.0 35 ................................ CGTCTGAAAAATAGCCCCACCCGCTGGAAACATTG 2620240 32 100.0 36 ................................ TCCATCATGCTGCCTCCCGCTGGACGGCTGCGGTCG 2620308 32 100.0 35 ................................ AGGTATTCGAGCATCTGAGCGCGGACCTTGCCCCA 2620375 32 100.0 32 ................................ TCGAAGTGGACTTGGATGAACTGAAGCGCGGC 2620439 32 100.0 34 ................................ AAGACGGCTCTCGACTTCGCGATGGATGTGATCA 2620505 32 100.0 34 ................................ TGCCGGTGGTATGCCGACGAAGCAGCGCTAGGCC 2620571 32 100.0 35 ................................ CTGCGCGGCACCGGTACGGGCGCCTCTCCGAAGGG 2620638 32 100.0 34 ................................ AGCATCGTGAACGCCTTGGGGCGGGTGATGCCGT 2620704 32 100.0 34 ................................ CTTAGCGGTAGTCATCGAAGCTGTGTCCCGATTG 2620770 32 100.0 35 ................................ CCACACGATCTCCAGATCAGGCCAGCCGGCGCGCG 2620837 32 100.0 35 ................................ AGCCATCCCCACTGCCGGCCGATGGCATAGGCGGT 2620904 32 100.0 34 ................................ CATGACAAGGAGGCCGGCACCCGCGGCAACTGCA 2620970 32 100.0 33 ................................ GGGTCTTCGGCGGACTGGTCGAGGCGCATGACC 2621035 31 90.6 34 .........-.T............C....... TCCAGCTTGTCGGCTAGGGCGAGTAATGCGGATT 2621100 32 84.4 34 .......T.C.T.........C....A..... CAGCGCTCGACGGCGCGTTCCAGCTGGGTGAGGG 2621166 32 93.8 36 ...A......G..................... TCCGTCAGAATGAAGGCGCTGACAAAGATGTTGAAG 2621234 32 90.6 36 ........TC.T.................... ACCGCCCCCCTTCGAGGCGGGCGACACCGATCTGAC 2621302 32 96.9 35 ..........G..................... GGCTCCAGCAGCGTATACAGCTCGCGGTAGTTGGT 2621369 31 87.5 35 .........CG...-................T ACCAAGAGCATGCACCGTTGCAAGGAGGAAGTCGC 2621435 32 90.6 34 .........CG................A.... ATGACCGACAAGGCCGCGCGCTATGCCGACAAGC 2621501 32 96.9 34 .......T........................ ACCTACTCGGTCGTCGGCGGGGCCGATGCCGCTC 2621567 32 93.8 35 ............A....A.............. GTTACCGGTATGGCGGCCTCGCGCGGCTATTGGGT 2621634 32 78.1 99 .....TA..C.T.G.....T....G....... TACGAAGGGTTGTGGACTTAGTCGGGGAAAGCGAATTGTTCCCTACGCAAGGGCGTAATCAAACCATCCGGCGTCATAGCATTCGCCATCGCCGTGGTG T [2621647] 2621766 31 78.1 0 ......A..........C.AC..CG..-.... | A [2621783] ========== ====== ====== ====== ================================ =================================================================================================== ================== 101 32 98.8 35 GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGGTTACCCGCCGTTCCTTTGGAAATGACCGGCGATGCTGATGTTGATCACCTATGACGTGAACACCCAGGATGCGGCCGGCCGCCGCCGATTGCGCCGGGTTGCGAAGGCATGCCGGGATTTCGGCCAGCGGGTTCAGTTTTCTGTGTTCGAATGTGAGGTCGATCCGGCACAATGGACTGCGCTGCGTGCCCGCCTGCTCGGTGAAATCGACCAGAGCACCGACAGCCTGCGCTTCTACCATCTTGGCGCCAATGCGAGCCGCCGCATTGAACATGCCGGCGCCAAGCCCGCGCTGGACCTCGACGGGACGCTGGTGTTCTGAGCGTGCGCGAACCCGAAGCGGACAGGAAACCCCTGGGAGGTCCGCACCGCAGCGCTGTCAACGACTTAGCTTCAATGGCATAGTGAGCGACGCCCGACAGAGTGGAGCGCACGAGTGGTTCGCGCTCGATCCGGGATTGTGGGTTCCTGAACAAGTGGATATTGACTGGCA # Right flank : CGTCTATGGGCGGCAGAGTCAATTCTCGGTGGTTGCGCGCCCCCGCAACCAACGACACCAGACGCCCCGGTTCGAAAGAGCCGGGGCGTTCGTGCGTTTGAGGTTCATTTCGCCACACGCCTCAAGGATTGCCAGCAGGTCGCCATGAAGCTGCGCCTCCAGCCCGGCGCCTGGGGCAGGGGGACAGCACGACGCGGTCGACCATGGACCGGATCATCTCCATTGCGGCCATTTCCCCGTTCTCTTGATCTCTGCAATGCGGCAGCCCGGCAAAAAGATCACCGTTGCCCAGCGGTGGACTCCGCCGTCGTGCCGATTTGCGCACCAAAGTCTCGCCTCATTCGCCCTTGGCGGGTTTCGCCGGTGGCTCAATGCCGGCCAAGATCAACGTGCGGTCCAGCAATTGGTGGTAGATCGGCTTGCCGCCCAGCCATTGCGCGGCGAGGTTGGCAGAGAGGCAGGTGGCCAGCAGCGGCATGGCTACCTCAAAGGCGCCGGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //