Array 1 475049-476356 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTV01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 19 NODE_3_length_712907_cov_24.0869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 475049 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 475110 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 475171 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 475232 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 475293 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 475354 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 475415 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 475476 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 475537 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 475598 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 475659 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 475720 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 475781 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 475842 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 475903 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 475964 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 476025 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 476086 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 476147 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 476208 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 476269 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 476329 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 493026-494702 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTV01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 19 NODE_3_length_712907_cov_24.0869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493026 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 493087 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 493148 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 493209 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 493270 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 493331 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 493392 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 493453 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 493514 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 493575 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 493636 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 493697 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 493758 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 493819 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 493880 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 493941 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 494002 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 494063 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 494124 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 494185 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 494246 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 494307 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 494368 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 494429 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 494490 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 494551 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 494612 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 494673 29 100.0 0 ............................. | A [494700] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //