Array 1 30730-29802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWHE010000065.1 Pseudomonas aeruginosa strain ZBX-P4 000011F-arrow, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30729 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 30669 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 30609 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 30549 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 30489 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 30429 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 30369 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 30309 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 30249 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 30189 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 30129 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 30069 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 30009 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 29949 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 29889 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 29829 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83124-84528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWHE010000077.1 Pseudomonas aeruginosa strain ZBX-P4 000009F-arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83124 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 83184 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 83244 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 83304 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 83364 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 83424 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 83484 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 83544 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 83604 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 83665 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 83725 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 83785 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 83845 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 83905 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 83965 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 84025 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 84081 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 84141 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 84201 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 84261 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 84321 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 84381 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 84441 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 84501 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 94703-93054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWHE010000077.1 Pseudomonas aeruginosa strain ZBX-P4 000009F-arrow, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94702 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 94642 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 94582 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 94522 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 94462 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 94402 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 94342 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 94282 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 94222 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 94162 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 94102 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 94042 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 93982 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 93922 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 93862 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 93802 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 93742 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 93682 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 93621 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 93561 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 93501 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 93441 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 93381 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 93321 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 93261 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 93201 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 93141 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 93081 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //