Array 1 10764-9470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYSR010000034.1 Paracoccus bogoriensis strain BOG6 NODE_34_length_31330_cov_94.078616, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10763 36 100.0 30 .................................... GGTTAGGTTGAAGGTGTCGAACTGCATGGC 10697 36 100.0 30 .................................... CTGGCGCGTCCTGCGGCCTTCATGTCTGCC 10631 36 100.0 30 .................................... GGCCAGCGGTTTCCGCATCCCCGGCTTTGC 10565 36 100.0 30 .................................... CTCATGCTAAGCTCGCTGATGGTGCGGCGC 10499 36 100.0 30 .................................... CAACCTCCGCAGATTACGCCGGGTTCGGCG 10433 36 100.0 31 .................................... GGTATGCTTCGACATCCGGCCCTTGAGGTGA 10366 36 100.0 30 .................................... AGAAGGACAACCAGCAGCAGGGCAAGGCCG 10300 36 100.0 30 .................................... AGAAGGGCGAGCCGCATGAATGCTGCGTGA 10234 36 100.0 30 .................................... GGATCGCATCAAGGGCACAAAAGCCCCTCA 10168 36 100.0 30 .................................... CCGCAGGTCGCGGATCAGTCCGGCATTTTC 10102 36 100.0 31 .................................... GCAGCCTGAGTCAATGCGCAAACCGGCAAGC 10035 36 100.0 30 .................................... GCTCATCGGCGATGATCCCGCATCGCTGGT 9969 36 100.0 30 .................................... TGGTCGCCCTCGAACCAGCCGATCAACGGC 9903 36 100.0 30 .................................... ATCCGTCGCCCCGCTCCGCGCCCATGCCGG 9837 36 100.0 31 .................................... AAGAAGGTGCTGCCTGACCTTTCGACTGTCA 9770 36 100.0 30 .................................... GCCTGCCGGGGCGGCCCACTCAGCCGCTAT 9704 36 100.0 31 .................................... TGCCCCCCCTGAACGACCTGATGGAAACCGA 9637 36 100.0 30 .................................... GCGGATCGGCGCCGTCATCTTAGTTTGGCC 9571 36 100.0 30 .................................... TCGTAACGCTGCGACCGGGCGATGTCTCGT 9505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 ATCCTAGCAGAAAAAGCGGCGCAGCCAAGCCCGGAC # Left flank : CCAGTCCTGCGAGACGGGCAAACTGCGCCTGGTCTTTCCGGACCGGCCAATTCCCCTAGCCGCCGAGGATCTGGATGATGAGTGAAAACGGCTTCAAGCAACTTTCGGGATACAGGATCATGTGGGTATGGGTGCTTTTCGACCTGCCGGTGCTGACCAGCGCGGAACGCAAGCAGGCCACGCGGTTTCGCAACGATCTCTTGGACCTTGGATTTGAAATGGTTCAGTTTTCGGTCTATCTTCGCCACGCTTGGAGCAAGGAGAAGGCCGAAAGTTATGCCAGACAGGTTGGCGATCTCGTCCCTGACGCGGGCCATGTGCAGGTTCTTTTCTTCACCGACAAGCAATATGCGCTTAGTCAGGTCTTTCACGGCAAGCGGAGATCGAAAGCTCCTGCGGAAAAACCGTCTCAACTTTTGCTGTTCTAGGCGTGACGAGGGCGTTTTTCTGCGGCGAAATGCGGTAAAAATCCCCGCGCAACAGAGCGTTGCGCGGTGCTT # Right flank : GGATCGCGCGTTCCCTAAGCCGCCACGGTCAAGGTCTCACGGCTCGCGTCAGCGCGGCTGGTGTCGCCAGGCAAAGCCGTCGCAGGGGTCGTCCAGAAGCTCGGCCAATTGGTCGTCAAGAACCATCAGCGTGATAGAGGCCCCAACCATGTCCAGCGACGTGCAGTAATGCCCGACCAGCGACATCTCGACCGCGATGCCGCGTGCTGCCAGGCGCTGCCCAAGGCGTCGGCGCAGCACGAACAGTTCCAGCCCCGGTGTGCCACCGAGCGAATTGACCAGAACTGCCACGCGCCTTGCCTCGGGCGATAGTTCGGCGAAAAGACGGTCACAGATCTCGTCCACGATTTCGTCGGCATCGCGCATCGGATCTCGGCGCACGCCCGGTTCGCCATGAACGCCGACCCCGAATTCCATTGCATCGGGTTTCAGCTGAAACGCAGGACGCCGCGTATCCGGGACCGAGCATGGTTCCAGCGCGACCCCAACCGTCAGGCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCTAGCAGAAAAAGCGGCGCAGCCAAGCCCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 60698-60291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYSR010000009.1 Paracoccus bogoriensis strain BOG6 NODE_9_length_108416_cov_253.826471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 60697 37 100.0 36 ..................................... ATGTGTCGGGCGCAGAGGCGGCAGGCCGCGCAGGTA 60624 37 100.0 38 ..................................... GTCGTCGTGCGAAACGCGCAAATGCGCCTTCATCTCGT 60549 37 100.0 38 ..................................... CATGGCGCGACCGGTATCCACGCCCATCGGGCGGCGCG 60474 37 100.0 36 ..................................... ACCGGCGGCGGTTGCTGCGGCGACTGGCGCTGACAA 60401 37 100.0 37 ..................................... CGCAGGAGATGGGACGGTCCGCGCGGTGGGTGGCGTA 60327 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 37 GCTTCAATGAGGCCCGGGCGGGGAGGCCCGGGAAGAC # Left flank : TGAACCAGGCAGGCCAGCCCTGCGAAGGCACGATCACCAGCCTGTTTCTGGACCGGGGCGGGGTGCTGCTGACCCCGCCCTTGTCGGCCGGTCTCTTGCCCGGCGTCCTGCGCGCCAGCCTGATGGCGGCCGGGCGCGCACAAGAACACGCGCTGACGCTGGACGACCTGCGGGGCGGGGGGCTTTTCATGGGCAATGCCTTGCGCGGATTGATCCCGGCGCGGCTGACGATCAGCCCCTGGGGCGTGGACACATTTGCCTGAGCCATAGCCGGACTCAGGCGATGAGGACGGTGGCCAGGTTGTTGCAGGCGGATGTCTCGCAGCGTGTGGCGATGCCTCGGAAGTGCTTGAGCTTGGTGAAGAAACGCTCGATCCGGTTGCGCTCGCGGAAGAGGTCGGGATCGACCGGGCGCCGCACCTTTCTGCCGCGCTGCGTGGGGATGTGTCCGCGCCCGCCGCGTGCGGCGATCAGATCGAGGATGGCGCGGGCAACGCCGA # Right flank : GCCCCCTCGCTTTTGGCGACTTCCGTCAAAGGCTTGCTCACCAAGTTGCGAGGGGTCTGCGGCACAGTCCGGTCAGGGCGGGCCAGGATCGGTATGCAAAGCACCGAATATTCAAAAAGAACACGGGATTCCATATGTTTGTCCGCCTGCGAGCAGTGCTGGCGCTTTTGTTTGAATAACAGCGCTCGCCAGCCACCGGCACTAGATGACAATCGCACGCCGCTCGATCGGTGTAAAGGTCTTGCCGAGGCTCTCGACATGAAGCGCCACCTCTTCGGCCGGGCCGAGATCGAGGATCACGACATGGTCAGCCGTGGCATCAATGATGCCTTCAATCGCTGCGGCCATCTCGATCCTGCGCTTGCCGCCAAGGCGGCAGTGGAACACCGACAGCTGAAGCCAGCGCCCATAGCCCTGCATCAGCTTGAAGACCCGCCGCCAGCGTTTGGGGTCGGAAATGTCATAGACCACCACATAGGCATGTTCGGCATTGGATGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCGGGCGGGGAGGCCCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //