Array 1 38126-39472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYK010000010.1 Pseudomonas aeruginosa strain Patient_12_PostExposure2 P8-R2_c0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38126 28 100.0 32 ............................ GAGAACTGTCAGCCTCATAAGCGCACCCATTC 38186 28 100.0 32 ............................ TGTGGAGGGGATCGTTGCCGGCATCACGCCAA 38246 28 100.0 32 ............................ AAGGATACCCGCGATACCCAGACCCTCGACGC 38306 28 100.0 32 ............................ AGCCCCAGGCAGAACACCTGCTGACGCCTCAG 38366 28 100.0 32 ............................ TGGGGGCTCGGCCTCATCGGCGTCAGCCTAGC 38426 28 100.0 32 ............................ AGATTGACAGGCGCCGATTGTAGCCGATAGCC 38486 28 100.0 32 ............................ TTGGCCGCTGGTTGGGATTACAGCGTGCTGAC 38546 28 100.0 32 ............................ CTGGACCGACAGGGCGGCGTCGATGAGTACAT 38606 28 100.0 32 ............................ GATGATCACCCCGATGATCTGAACATCCTCAG 38666 28 100.0 32 ............................ TGCGGCACGCCTGGGAGTCACTGAGTACGGGC 38726 28 100.0 32 ............................ AACAACAACAGCCAGGTGCTGGCCACCACCAA 38786 28 100.0 32 ............................ AATAGCCCGTACAGTCCGGTGGGGATCGTTGA 38846 28 100.0 32 ............................ AAGCGCTGCGGGCTGTCGCGTTGCGCTGCTCG 38906 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 38966 28 100.0 32 ............................ ATCCCGACGTGGGGCTGATCGACGCGAGCGCA 39026 28 100.0 32 ............................ TTCCCGGCGCACCTCGAGGCGCTGCGCGAGTG 39086 28 100.0 31 ............................ GGAAATGCAACAGCGTCTGCGCAACCTCAGA 39145 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 39205 28 96.4 32 ....G....................... AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 39265 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 39325 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 39385 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39445 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48865-47997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYK010000010.1 Pseudomonas aeruginosa strain Patient_12_PostExposure2 P8-R2_c0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48864 28 100.0 32 ............................ CCACCGAAGAACCCTTCGAAGGCGCCCATGTC 48804 28 100.0 32 ............................ AATCACTTCAGTATCCAGGCCGTACCATTGCT 48744 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 48684 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 48624 28 100.0 32 ............................ TGGGCGCTGGCGATCGATGTTGATTGCGAGCC 48564 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 48504 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48444 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48384 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48324 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 48264 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 48204 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 48144 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48084 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 48024 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCAACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGCGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //