Array 1 690-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000108.1 Pediococcus parvulus strain NBRC 100673 sequence108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 689 36 100.0 30 .................................... TAATCAACCATTTAACAGACGGCCCCTTGA 623 36 100.0 30 .................................... CTTATCCATCTTGGTCTGCAAGTCTTCCAT 557 36 100.0 30 .................................... CAGACGGATCGACTATGACCATCGCCGAAT 491 36 100.0 30 .................................... GACTACGTTTGCCATTAGCTACCACCTCCA 425 36 100.0 30 .................................... ACAGGCGTGTCTTGGCTTGCGCTTGTAAGT 359 36 100.0 30 .................................... ACATCATCGGCAAACTTGCTGATAAGAACG 293 36 100.0 30 .................................... AGTTTTTTGCTGTATACATAAAATTTATTT 227 36 100.0 30 .................................... TTTAGTTGTTCGATTTCTTTATCAGTGAAT 161 36 100.0 30 .................................... ATGACTATTTACACGGCAAGGACAGTATTC 95 36 97.2 0 ...............A.................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : TTCCTCCGCTTCTTTTCACGACGCTTCTT # Right flank : CCTTAAACCGGCCGTTAGCGATCATTTTTTTGCTCTTAACTATATTGATTCGACACTCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 698-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000107.1 Pediococcus parvulus strain NBRC 100673 sequence107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 697 36 100.0 30 .................................... AAAGAGTGATAAAGCCCAGTATAATAAGGG 631 36 100.0 30 .................................... TGCTTAACACATATTTCTCCAGATAGTCAA 565 36 100.0 30 .................................... GCTATTTTTGCAAGTTCGTCGGCTCCCAAG 499 36 100.0 30 .................................... AAGGTCAGGCGGCTAATGCTTTAGGACAAG 433 36 100.0 30 .................................... GTGAATCATTCAACACAGCTGATCCGCATG 367 36 100.0 30 .................................... TTACGACATATAAAGATACTGTCGATCGGC 301 36 100.0 30 .................................... GAGAAATGAATTTGACTCGTGGATACATCA 235 36 100.0 30 .................................... TTTGGAATTAAGTTTACGCCGCTTATTTGG 169 36 100.0 30 .................................... TCAAACATAACCCCTAAAATGCCGCTTTGT 103 36 100.0 30 .................................... CCGTTATTGTCAATCCGTATAAAGCCGCTG 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : CTTGTTAGCAGAAGTATTGTTCATTTGATC # Right flank : CT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 15006-16493 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000041.1 Pediococcus parvulus strain NBRC 100673 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15006 36 100.0 30 .................................... ATTGGACGATCAGAGTGAATCATTCAACAC 15072 36 100.0 30 .................................... CGTCAACCAGCTCAACTGAATGATAACGTA 15138 36 100.0 30 .................................... AGAATTTGGAAATGATTTCACTCACTGGAA 15204 36 100.0 30 .................................... CGTCAACCAGCTCAACTGAATGATAACGTA 15270 36 100.0 30 .................................... CTTAGATTGTGTTGCTTCTGTTTCAGTAAA 15336 36 100.0 30 .................................... TAGTTCACGTTTGGACATTCAGCCGTCTGC 15402 36 100.0 30 .................................... TTCAGATGAAATTTTTCCACCAATTGACGA 15468 36 100.0 30 .................................... GGATACTACGGACGTTACAGAAGGAGGTGA 15534 36 100.0 30 .................................... AACATTCACTTGTTTCTTGATTTCAGCTAA 15600 36 100.0 30 .................................... TACAGCGTGGAGCTTAATATGTTTCGATGT 15666 36 100.0 30 .................................... CCAGGTTGCACCAGATTTGGAAAATAATTC 15732 36 100.0 30 .................................... CGCCTATCGGAGTGGCCAAATAATGCTCAA 15798 36 100.0 30 .................................... TGACGTACCGAGAACACCAGCTCCCGCTTC 15864 36 100.0 30 .................................... AGCGTAGCGGAGCATCATCTCCCCAAATAT 15930 36 100.0 30 .................................... AACGTTGGCATCAATACGATAGTACAGCGT 15996 36 100.0 30 .................................... GCCTGATATGCTTGCAGGAAACCTGTAATT 16062 36 100.0 30 .................................... TGCGCATAACGAGGTCTGTTATGTCATCAA 16128 36 100.0 30 .................................... TAAGCAAAGACTTTGTTTCTTCTACGTCAG 16194 36 100.0 30 .................................... GTACAAAGGTAAGATACTTACATTACCAGA 16260 36 100.0 30 .................................... GGGCTTAGCTAGCATCGGATTAGCTTTTTC 16326 36 100.0 30 .................................... TGCAGTTTGCCAATCTGTTCAGTTAGATAA 16392 36 100.0 30 .................................... TGATTTCAGGCAATTGAAGTATTGCTGTCG 16458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : CGACCGTCCCCAGATTGATCAATTCATCGGTGCTGCTTATGGCGAACTGTCGCAATCCGCTAAATATGGAATTGGTGGTAACTACAACGTAGAGATTGTGAACAATTTTGTGAAAGATGCCGATACGTTTACGTTGCTTTTGCCGGCGATGGAAAAATAAAGTGACCATAATGAAAAGCGCCCTTCAAATATAAGGGCGCTCTTTTCATATATTGATTTTGGCACTCTTAAGAATACGTTTTTTGCACAATTAAAAGTTCATAAATCTCTTATCTAGATCGATTCGACAATAAAAGTCCTGCAAGCACTACAGTCAATATGTTTGACAACACTTGCAAACCACTGTTTGAGTTTCCTGAAACGTTCAAAATTAAGGAGACGATAGACACCAGTATTGTAATTACGGCTAACCATTTAATTTTTTTACTCATAGCTCTTTCCCTCCTTTTATTAGTCACTTGTAAAACAAGTATTCATTAATAGTAATAGTTGCTTCCTTT # Right flank : AAGCATTCATCTAACAGACAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 691-2112 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000083.1 Pediococcus parvulus strain NBRC 100673 sequence083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 691 36 100.0 30 .................................... CATGGTGGAAGAACAATCAGCCAACAGTGA 757 36 100.0 30 .................................... TGTTACTACAGTTCCACGTGGTATTGTGCT 823 36 100.0 30 .................................... AAAAATATAGAGGTTCCTAAGAAAAAAATA 889 36 100.0 30 .................................... CACGTTGTTTGCACGATAATTAGTCGTAAA 955 36 100.0 30 .................................... CAGTAGCTGCACTCACTTTAGAAGCAAATA 1021 36 100.0 30 .................................... TAATATCAAAAGTAATTGGATAATTTTCAG 1087 36 100.0 30 .................................... TAGTTTCAACCAATGTATCACCAGTTAAAC 1153 36 100.0 30 .................................... CTCAATGCTATCTTCATTGGTTGATGCTGC 1219 36 100.0 30 .................................... TGGTGTCATGTTGATCACACTGCAAAGCCA 1285 36 100.0 30 .................................... TGTCCAGGAAATATTCACGATGGTGTACCA 1351 36 100.0 30 .................................... AGTTTTTTTAGGTTTTCTTACTTCCTAACA 1417 36 100.0 30 .................................... GCGGTTTATATTTCACTGGCAAGTGCGGAT 1483 36 100.0 30 .................................... ACGCTGGATATCAAAAATCAGAGGTATCTG 1549 36 100.0 30 .................................... AGTATTGACGGCTATAGCAACAGACTGAAT 1615 36 100.0 30 .................................... CTATTTTAGCATTAGTTATTGCCCCATCAC 1681 36 100.0 30 .................................... CAACATCTACATCTAAGTACCAGTCAATTT 1747 36 100.0 30 .................................... TGCCAACGAGGCTAAGAAACAGCTCAAATC 1813 36 100.0 30 .................................... CGAAGAGGGCAAAGAAAAACCAGCGATGAA 1879 36 100.0 30 .................................... AGGGGCGTTTGTAGGGTATGCCTATATTAG 1945 36 100.0 30 .................................... CATCAAGCCCAGTTTCATCACTAATCCACT 2011 36 100.0 30 .................................... CTTACAATAGAATATATTCTATTATGAAGA 2077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : AGCTGATTATCAACACGTTCGTGTTGACTAGGTTGATATCTTTTCCAATGGTAATAGGTGCTGCGCGGTAATTTCAGTGCCGAAAGAATAATTGATAAGCGGTGTCGCAATAACTGATCTTCTATGAAGACAAGGCAATTAATTCGTCCTAATGCTTTCCCAGTAACACCGCCGCAGCTTTTAAAATTTCAAGTTCCTCCTTTAATCGCTGATTTTCCTTTTGAAGTTGTTTGAATTCTTTGGACGTTACTTCAGTACCGTCTTCTAACTCAACTGATTTAGCGTCTTTAACCCAGTTATGAATTGCGGCTGGAGAAACACCGTATTCCTCGGAAAGCGAGCGAATAGATCTTTTCTCTTCACGATGCATCTTCACAATGCTGGCTTTAAAATCATCTTGATATCGTTTCATTGGAATGCTCCTATCTTGTTTTATTAATTATGGCACAACTGTTCAGAAATTTATGTACCAAATACTAGGATAGGAGCAAGATGATTGC # Right flank : CGAAGGAGTTCGCGAAGGATGAGCGCATCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 16544-22219 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000012.1 Pediococcus parvulus strain NBRC 100673 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 16544 32 100.0 35 ................................ TGTTAGCAATGCTAGCAATATTATGGTTAAACAAC 16611 32 100.0 34 ................................ GACTCCCTGATCTTTTTTTGTTCCAAAAAATTCA 16677 32 100.0 34 ................................ AGTTTTGCTAACATAACCATATTTTGGTGACTTT 16743 32 100.0 38 ................................ TGTGTGAACCCATCTTGTGCAACTTTGGCATTGTCGTT 16813 32 100.0 34 ................................ ATTAATTCAAAATAATCATAAGTTGTTTTGATTA 16879 32 100.0 35 ................................ CACATCTCTTAAATGCATCCTAAAAAATCGGCCTT 16946 32 100.0 33 ................................ TTCGTTTTCGAAATATAAGATTCCGAATGCGGA 17011 32 100.0 37 ................................ TCTTTTAGCACTTGATAAAGCACGTTGCCAAACGAGC 17080 32 100.0 34 ................................ AACACTATCATCCGATTTGAGTACAATGCGTAAA 17146 32 100.0 36 ................................ AGGTTGGTGATGATGGCAAAGTTACCTATTCAATCG 17214 32 100.0 34 ................................ CAGTCTTAATCTTAACTTTTTCGTCTCTTTTATT 17280 32 100.0 35 ................................ ATCCAATACAGCCGTGTTACAGTGATAACTATCCC 17347 32 100.0 39 ................................ GAGCTTGATCGAAGCTACACATCTCCACCGCTCAAGAAT 17418 32 100.0 36 ................................ ACAATGACGGTGGAGCACTAAGTAACGTTACTTTTA 17486 32 100.0 34 ................................ AAAAAGATTCACAAGTACTTGTATGGTGTGAAAT 17552 32 100.0 36 ................................ CAATCCGTTCCTTTACGACTAATCAGATATCCGTTC 17620 32 100.0 34 ................................ CATTTCCACTCCTGCAGGCACACACACGTTGCTT 17686 32 100.0 35 ................................ ATCAAGTTGTTGACAAAGTTTAACCGATAAACTAA 17753 32 100.0 33 ................................ ATATAAAGCTAAGCATAAAGACGATGCCGATGA 17818 32 100.0 36 ................................ AATCTTACACCTCCTATTTCTGATCACGATTCGGCT 17886 32 100.0 34 ................................ CAGCCATTTACGGAGCAAGTCCAACTGCTAAACA 17952 32 100.0 34 ................................ TTTAATCTATGTTATTATTATAACTCTAACTAGC 18018 32 100.0 34 ................................ ATGATGTAATCTGAACACATGATCAAAATCGTTT 18084 32 100.0 34 ................................ CCTTTTTTAAGAAGCAATATCATGGAGTTCCATT 18150 32 100.0 35 ................................ TTTTTTAACCAAGTACTGTAACCTTTTAACTTCTG 18217 32 100.0 36 ................................ CGTTAAATTAGCAACGTCCGGTGACTTGAATACCTT 18285 32 100.0 34 ................................ TCAAAATTATTAGGGATGAGTTAAATGCTAAGTT 18351 32 100.0 35 ................................ TACGGATACCGGCTTCAAAGAACCTAAGATTCTAC 18418 32 100.0 33 ................................ ATGTGACACCTGGTCATTTTGGTGTAGATCCGG 18483 32 100.0 34 ................................ TTCAATGTTGCGGCTGTTGAACTAGATTTAAGTC 18549 32 100.0 35 ................................ CAACCACTCGTGGCTTTGAGTATAAGGAAGTTTCG 18616 32 100.0 38 ................................ AACGTACTAATCATTTGAGAAATTCTAGAAGCGGAAAC 18686 32 100.0 33 ................................ TCTTCGTGATATTCTTCGTTAAACTTTTGAACC 18751 32 100.0 33 ................................ TGTTCAAGTTTCTGCTGATGTTACGCGTTTTGA 18816 32 100.0 36 ................................ GATTTAATCAGTGACGATGCGATTCTGGATTATAAA 18884 32 100.0 36 ................................ CCCCTTTCCTTAACCTTATGTACACATTGTAATACT 18952 32 100.0 35 ................................ GTCCAGGCGTTAACGAATTCAATGACGAACAAGGC 19019 32 100.0 37 ................................ AGTGACATCATTTATGATATTGCCAGAATGTTTGGTT 19088 32 100.0 35 ................................ TGCATACTATCAATGGCGCCACCGGACATATTCGC 19155 32 100.0 36 ................................ TATGGTGGCACTAATCTATCTCAGAGCACTTACAAT 19223 32 100.0 37 ................................ AGCCATAGCTGGTGCACTAGGTAATACCACATTGCCC 19292 32 100.0 33 ................................ AAATCACAGGAGTCGGTAATTCTAGTATGCGTG 19357 32 100.0 35 ................................ GACATAACGGCTCTTTTGGTCTGGGCAATAAGTGT 19424 32 100.0 35 ................................ GTTTTGAACGTGACGGGAAAACGTATGAATCAAAG 19491 32 100.0 35 ................................ ACTTTATATTGGTTCATAAATTTGGCCTCTTAATT 19558 32 100.0 34 ................................ ACCAGAAGAAACAGCTGACTTATTATCTGGATTC 19624 32 100.0 36 ................................ CGAATACTGCACATAGCGAGTATCGACGTGCATACG 19692 32 100.0 35 ................................ ACTCAAGTCAAGCAATGAAGATCTTACCTCACAAG 19759 32 100.0 35 ................................ TGCTCGGTTTTAAAGTCGCCGTGGATAATTGAACT 19826 32 100.0 36 ................................ ATTTAGTAAAATGAAGCCCTCTGTATGTGTTCCATC 19894 32 100.0 38 ................................ TATAACAAAATTTCGGCTATGCGACAACAAGAACAAGC 19964 32 100.0 38 ................................ CATCAAATAACGAGTAGTCAGGATAAACGTAGTAAACA 20034 32 100.0 34 ................................ CAAAAGAGGAACTATAAAATTTAAAAATAATTAT 20100 32 100.0 35 ................................ AAGCAACAATGCGTTGTATGCGATATTTGCCAAAT 20167 32 100.0 36 ................................ ATTTGGTTTTGCCTTCTTTAGGACTTAAAATGTAGC 20235 32 100.0 35 ................................ TATTGAATTCGACAATAATACAGGTGAAGTAACCG 20302 32 100.0 34 ................................ TTACAGCATGGAGCTTATTATGTTTCGAAGGTGG 20368 32 100.0 35 ................................ ATGAATCCACGCATGGCTAGTATGACAGCCAAGCA 20435 32 100.0 35 ................................ TAACTCAGCAATGGTCATAGTAGATCCATCAGTCA 20502 32 100.0 35 ................................ AAAAATGGAATGATTTAACGCCACGTATGAAGACG 20569 32 100.0 35 ................................ TACTCTGCACTCTCATCACCATATCTAATCCGATC 20636 32 100.0 33 ................................ TTGAAGCGTTTACTGCTAAGTCATCCACATCAG 20701 32 100.0 34 ................................ AAGATAATTGCGGACCTGTAAGGCTAGCTGATTG 20767 32 100.0 37 ................................ ATAAATAACTAAAAAAGTGTGACGGATGTGACGGACA 20836 32 100.0 35 ................................ AAATGCTCAAAATGATGCTAGTTCAGCAGTTGCTA 20903 32 100.0 36 ................................ TGCTATAACCCCAATCTGATTGATGGTGTGTACCTG 20971 32 100.0 37 ................................ TGATTAATCATTATTTGCTTGCCTCATTCAGTCGATT 21040 32 100.0 35 ................................ AGCCTTTAAAACTGAAACAGCTGAATCATTTTGTT 21107 32 100.0 35 ................................ TTGCACCAGATAACAATTGATCATGCACAGATGTC 21174 32 100.0 34 ................................ ACGATATTCGTCAGCGTTTTTGCTTTCGATTCCT 21240 32 100.0 37 ................................ ATTCCAAACATCCACCTTTCTACTTGATGTGATAATT 21309 32 100.0 36 ................................ AATGATGAAATATATTTAACGTCAGGAAAATGGTTT 21377 32 100.0 35 ................................ ATTAGTTCCATTGGCAGTACTCAAAGAATCAAAAT 21444 32 100.0 35 ................................ ACGATAGAATTAGACTTCCAGGTGAATTTACCAAT 21511 32 100.0 36 ................................ TGATTTAGATGATTCAACCCAAGACACAATTATTAA 21579 32 100.0 35 ................................ CATTAAATTTAGTTACACTACCACGTGCTGTTCCC 21646 32 100.0 35 ................................ GTTCTAAAGGCGGGGACGACCTTGCTAAACTTATC 21713 32 100.0 36 ................................ TTGGTGCACTCTTTATCTTTATACGTGTAAACAGCT 21781 32 100.0 36 ................................ TCCGATGTTTTTACGATAAAATCCCGATATTTTTCC 21849 32 100.0 35 ................................ GCCAACGAATACCCGGCAGAATGGTCAAGCAGTGT 21916 32 100.0 36 ................................ ACCACTTGGCTATTGCATGTGGCAAGCTTCTAATTC 21984 32 100.0 35 ................................ ATATAATGAACGCCAGCCAGCAAATCATCATAGCT G [22001] 22052 32 100.0 36 ................................ AACATCAAAACGATCAATCACGCGAATCTTGGTTTG 22120 32 100.0 35 ................................ AGGTGCCCACACACCAGGTTCTGGCTGGTCTGTTA 22187 32 81.2 0 ..T.............CC.T.....GC..... | A [22210] ========== ====== ====== ====== ================================ ======================================= ================== 85 32 99.8 35 GTCGCATCCTTTATGGGTGCGTGAATTGAAAT # Left flank : AATACAGTTGCGAAATTGTTTCAAGTAATCGATTCATCAACAACTGATGTGATTGTTCAGTATGGTGAAGGGAAAAAGCTCGTAGCTGAGCTTATTTCCCAAAAAAGCAAATTTGAAAGTATTTCAGGACTTTTAAAGCAAGTTCAGAAATATTGTGTTTCGGTGTATGGGAATCGGGAAGAACCTGGTAGTTATCTAGGTAAATTAATGGCGGATGGCAGTGTACGCTATTGCCAAGAACAAGATATTTTTATTGCTGAAGATGGATCGTATAGTGAAAAATTTGGTTTAGGCGAAGGAAAATTTGATTCTTTAGACTACTAATGCACTTAGTTAGTATTGTGGTGCGAGTATGAAGTGCACATAAATGTGCTAGGCAGTTCGCACCAATATTTGCAGGAAATGATTTATTTTTAGTTGTATTTGTTCGTTACATTTTTTTAATTATGTCCAGCCGTCTAAATATAGATATTTCTTCACCAGATATACTATATTTTGCG # Right flank : TCAACATTATTACTGATGATAATATTAGTGACTTATCATATTATTTCAGTTTATTGACCATACACGAATGAATCATTTAGAAGCTAACCATACAATATCTTTAAATAAAGCGTTTACATTTTTAGAATCGATGATATTATGATGTTAGAGAAACACTAAAACGTGATGGTGGAGATGAAAGAAGTGGAATATTCGGAAGATGATTTTTTGATGATATCCGGTATACAACATTTTCGTTTTTGTCAGCGACAGTGGTCGTTAATCCATGTTGAACAAGCATGGCAGGATAATCTATTGACCTATGATGGGCAAATTCTACATACAAAAGCTGATCAACCTGAAATTCGGGAAAAAAGAAAAAATAAGTTGATTGTGCGATCTTTACCAGTTCATTCTCGTGAATTAGGTTTAACGGGTATTTGTGATGTTGTTGAATTTGAGGAGAAGCCTGATGGCGTGTCGATCTTTGGCAGTGAGAAAAAGTACTTGCCCAAACCAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 38746-42940 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWE01000012.1 Pediococcus parvulus strain NBRC 100673 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38746 36 100.0 30 .................................... CTTTCGTATATGCCGTCATAGACTTCCGCT 38812 36 100.0 30 .................................... CATTGAACGAAACGAAATATGGTGAACAGA 38878 36 100.0 30 .................................... TGTGTATCGGCTTGATTATCCTTGTTCGCT 38944 36 100.0 30 .................................... CACTATGCAAGGACAGTTTGACCTGTCCAG 39010 36 100.0 30 .................................... ATGATGAGCTTTACTACCGGTTTGTGACGC 39076 36 100.0 30 .................................... CCTGTGTATGTGGCACACACAATAAAGTTT 39142 36 100.0 30 .................................... AATATCGATACACAGGTTTTGATTAACAAG 39208 36 100.0 30 .................................... GGAAGAGATTTATACTGTGCTTTCGCGTTA 39274 36 100.0 30 .................................... CGCAAGTTGATAATCAGGAAAATGACTTGA 39340 36 100.0 30 .................................... GACGAATACAAAGCTAAGACAGACGAACAA 39406 36 100.0 30 .................................... TTAGTCCAATGGGCAGCACAACAGGCTGGG 39472 36 100.0 30 .................................... CTGGCTGTGGCCCGGAAGAATCCGAGGCAA 39538 36 100.0 30 .................................... GTTCATCTAGTGGGGTAGTCTCAAGCTCTG 39604 36 100.0 30 .................................... AAGCGTTTTGAGTGGGAGTTGGAAGTCTGC 39670 36 100.0 30 .................................... TATCCCCTTTTTTATTATGCAAACATTAAT 39736 36 100.0 30 .................................... ACAGCAATGCAAATACCGCGTTAATAATAT 39802 36 100.0 30 .................................... TTGGCCCATAGACTTGTGCTGTACACTGAT 39868 36 100.0 30 .................................... ACTGCATCCTTGGCATCATCACGAGCATTA 39934 36 100.0 30 .................................... GGCAAAAATTCCGAATACAGCACACAGTGA 40000 36 100.0 30 .................................... TTATCTCTTCCAATTGCATAACCAAGTACG 40066 36 100.0 30 .................................... CAATGTACCCAATTAAAACAGCTATGCCGC 40132 36 100.0 30 .................................... TGCGTTCACTAAAGTAAACCCTGTGTGCGA 40198 36 100.0 30 .................................... TTAAACTGACCCCAATAATCATCATTTGAT 40264 36 100.0 30 .................................... TTTGAACCTGTATTCAACACCACATTTTTT 40330 36 100.0 30 .................................... TTAATATTGGGCTAAGACTAGCTGGATCAC 40396 36 100.0 30 .................................... AAAAGGATCCTCAAGCAGGAGTCCAACCAT 40462 36 100.0 30 .................................... CTGGTAAAAATGAAGGACTGTATCATGTTG 40528 36 100.0 30 .................................... AGAGGCAAAACAACTATGACAAAACTTACA 40594 36 100.0 30 .................................... TTGATGCTCCGTGGAATAGTAAGAACCTGG 40660 36 100.0 30 .................................... AACTGGACGGTTTAATCATGAGAACCATTA 40726 36 100.0 30 .................................... GTGTTCAATCTTAATACTATCAGTATCACT 40792 36 100.0 30 .................................... TAATAGGCTGGCGGAATACTGAAACGGATG 40858 36 100.0 30 .................................... AATTGAGAAACAATTTAATACTAAGAATAT 40924 36 100.0 30 .................................... AGATTCTTTAATTTTAATACTAACCTATGG 40990 36 100.0 30 .................................... AACGGATTGTTTATGTTCCTGTTTCTAATG 41056 36 100.0 30 .................................... TCCCAAGCTCGACTTGGCTTAGTCAGTGGG 41122 36 100.0 30 .................................... TGGTGATGGGGCCGTCTGTTAAATGGTTAA 41188 36 100.0 30 .................................... AATTGTTGTTGAGCTTCAGATGGTCCAGGA 41254 36 100.0 30 .................................... TTATACTGGTCAGAAGTGATACGACTACAC 41320 36 100.0 30 .................................... TTATCAGATTGAATATTTTCTATTGTTTTA 41386 36 100.0 30 .................................... TTGCTAGGGTCTTTTTTATTCGGCCTCTGG 41452 36 100.0 30 .................................... ACAAAGGCGTGGTACACGCAGATGAACAGC 41518 36 100.0 30 .................................... TCCGGATACTTGTATTGTGCCTTGCCACCT 41584 36 100.0 30 .................................... ATATCTGGGGTGACGATGCGCCACTAAGGT 41650 36 100.0 30 .................................... TATTTTTGATGTATAATCAGTAAATCCGAT 41716 36 100.0 30 .................................... GCTCCCGTCCGAGCCTGTGCATGAACGTGT 41782 36 100.0 30 .................................... CCATTTTTTGCCGGTCAAATTACTCTTGCT 41848 36 100.0 30 .................................... ACAGCGAACCATTGTTTATGCTCATGATAC 41914 36 100.0 30 .................................... TTCAACGTGATACTTATTAATCATCTCATC 41980 36 100.0 30 .................................... CCGCTACGTTGGAATACTCAGAATGTTTTA 42046 36 100.0 31 .................................... TTGGCCCCTCTGGTAAGCTCTAACATAGTCA 42113 36 100.0 30 .................................... AAATGAATGATTTAAAAGATGATGTCGTTA 42179 36 100.0 30 .................................... CAATTACAAAATGAGGCTAATCAAAACAGG 42245 36 100.0 30 .................................... GCGAAATAAACTTAACCCGTGGGTACATCA 42311 36 100.0 30 .................................... TATTTAGTTTTGCAGAATAACGAGTTAATG 42377 36 100.0 30 .................................... TTGACGGGTAGTTGGTAAACTGTTTGCTGA 42443 36 100.0 30 .................................... GGAAAAAATAAATGACTGATAAAACAGCGA 42509 36 100.0 30 .................................... TTGTTGTACCAGCTGTCTCTGCTGATCCAC 42575 36 100.0 30 .................................... GGTGAAATTAATGTTTAAACTGTACGATTA 42641 36 100.0 30 .................................... CAGTTAGTCCGTTACGTTTCCAACCCTGCA 42707 36 100.0 30 .................................... CCATCTTTGATGTAAAACCCGTTAAGGATA 42773 36 100.0 30 .................................... CCAGTTTTATTACACTTTCTAACACTTTTT 42839 36 100.0 30 .................................... ATTGCCAAAGCAATATGATGGATTTGATCA 42905 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : ACGTAGACTTAAATAAGATGTACCAAAGCCAATTGCAAAAGCAAATCGTGTCAAAATTGGATGATGCTTCTAGGCAAAAACTAACTGAAATCAATAGTCAATTAAAATCACTAATTTTTGATGCAACATTTTCATTAGATTTACCTCTTAAGGTTAACGACGAATTTGATCCGATTAAGTTGGTAAAGTACTGTGAAGTTAGCTTTGTAAGTGCTTTAAAGCAAGATCCATATGGTATAATTGAAACGGTGTTAAAAACTGCTTCTGAATTAAAGGAAACCAAAGTACTTGTCTTGACTAGTGTGAAAAATTATCTCAGTGTCAGCCAATTTGATGAATTGGTGAGTTTAATTAAGTCACTTGATTTGAATATCCTATTTATTTCATTCTCAGAAATGGATAATCATGAAGAATTTGATAAATGCCGTTATTACTACGTTGATCAGGATTTTGTTGATTGGCGGTACTAGATACTATGAGAATAGCATTATAAAAAAACG # Right flank : AACCTTGATGGCATATAGCCCAACTCCTCAGTTTTAGAAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //