Array 1 58254-59597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVMG010000001.1 Stappia indica strain SN13-18 SN13-18_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 58254 31 100.0 33 ............................... AGCACCGCGTCGATCTCGCGGAGCGTCAGCCTC 58318 31 100.0 35 ............................... GACGCGGAAGGCGGCGCGGCGCTGGAGATCATCAA 58384 31 100.0 36 ............................... GGCGTGCCGCCCCACATGATCGGGGACACGGAAAAG 58451 31 100.0 34 ............................... GTCCCTGAGGACCACTCGAACGCTGGACCATCTT 58516 31 100.0 36 ............................... ATCCACGAGGGCGCAAAGGCCGCGCGTCACGCCCGC 58583 31 100.0 35 ............................... CGCTGGCGGCCCTGATGGCGTGCGCGCGTCCGGAT 58649 31 100.0 34 ............................... GGCAGCGGCGCCGAGCTGAGGGCCTGCGAGGCGA 58714 31 100.0 35 ............................... TACGTCCATTTTTGCCGCTCCGTTTTTTGGCACAA 58780 31 100.0 34 ............................... GCAACGCCGTCAGCGGGTTAAAACCCGCCGCCTC 58845 31 100.0 34 ............................... CCCCGCCGGGCGCAATTTGTCACTGTGCCTGCAA 58910 31 100.0 35 ............................... TCCGCCGAGGTCAACACCTGGTTTGCCGCCAAGGC 58976 31 100.0 35 ............................... CTGCAGGTTTGTCGGCAGGTTTTCGTCCGCCAATA 59042 31 100.0 35 ............................... TGATTCAGAATTTGGCGGGGCCTTTGGTCCGCCGT 59108 31 100.0 34 ............................... CGCTGTGGGGCACTGGCGCGTCCATCGCCGACAA 59173 31 100.0 35 ............................... CACATCAACCGTTCAAAGAAACCGGCCTGCTGCAA 59239 31 100.0 36 ............................... TGGCGCTCAACCCGCTGCATCCGGATCGCATCGAGG 59306 31 100.0 35 ............................... GCTATGGTGGTGCCGGACTTCGATCAGGCGGTGAT 59372 31 100.0 33 ............................... GACTCGCGCATGCAGCAGCAGGCGCAAGAGTAC 59436 31 100.0 35 ............................... ACCCAAGCGAGGTCTGAATCGGCCTCTTCGGGCAG 59502 31 100.0 34 ............................... GGTGCAGCCGTTGGCCGTGGTCATGGCACGCAGT 59567 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 21 31 100.0 35 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CGGCCCGGCGGGTGATCGCCTTCAAGCACGCGTCCCCGCTCGGCAACGCGCCCGCTCATACCCTGTTCGACCGGGTCGAGGTGCGGCGCCGCTCCAATGGCGACAGCTATCCGCTCGGCGATCCGCGTCTCGACAACCAGCCACCGGCGCGGCGCTTTGGCGATTACGAGGTGCTGCTCGACCGCGAGGCGCTGCCGGAGGGGGTGGAGCTGATCGAGGTGCTGTAGCACTTGTCTTTGGCGTAAAGTTGCGTGGCGGCGCCCTTCAGGAGCGGAGGGCGCCGCCGTGCCGTTGGGGGATCGGGGCAGCGTTGCTCGCCCCGCGCGAACCGCAAGCGTGCCGGAAAACCCCGGGAGGTTCGCGCTTCCGCCAGATCATTGACATCGCTGATCTTTTTTCTCCGGGCGGGGCCGCCCGACCCTGCGCCGCGCGTCAAGCGAGGCAGGTTCGCGCAACGCGCCGGATTTTGTTTGGTCCCTCAATATGATAGCAAGGGGACG # Right flank : CAATGAGGCCGTTGCAAAGGCAGCTCGCCGAAGTCGCCCCCCTCGCGGGGGCGAGGTCAGGCCGGGGCGGGCAGGGCGCGGGCCTCGCGGAAGGAGACCAGCCGCCGGGCCTGTTCGTCCCACAGGACGAGTTTGATGCAGCCAAGGCTCTGGCGGAAGGTGATACGGCCGATGTCCCGCAGTTGCGGGTGGTCGCGCAAGACCTGCGGCAGGCGGTAGAACGGCACCTTGCTCGACAGGTGATGCACATGGTGGATGCCGATGTTGCCGGTGATCCACTGCAGCACCGCCGGCAGGTCGTAGTGGGAGCTGCCGTGCAGGGCGGCGTGCTGGAAGGTCCAGTCGTCGCCCTCCGACCAGTGAGTGTCCTCGAACTGGTGCTGAATGTAGAACAGCCAAACCCCGCCGGTGGCGGCCATCAGCGTGATCGGCAGTTGCACCATCAGGAACGGGCCGAGGCCCATCAGCCAGATCAGCCCGGCGACCGGCAGGGCGATGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18008-17719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVMG010000024.1 Stappia indica strain SN13-18 SN13-18_ctg024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 18007 31 100.0 33 ............................... GCTTGTTGCGCCAGGGACGCATGACCACCTGCG 17943 31 100.0 34 ............................... GCATGCCCGGACTGGTGGGAGCGCATCCAGTCGG 17878 31 96.8 35 .................A............. TTCCTCCTATTTCTAGACAACCCGCCGCCGATAGG 17812 30 96.8 33 .................-............. ACCGCCGCCGCCATCGTCCGTGACGGGCGGGAT 17749 31 77.4 0 .......................C.GCGTCA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 94.2 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CGATGCTGGTGCTTGTGACCTATGACGTGCGCGCCTCCGATGCCGGCGGACCGGGGCGGTTGCGCAGGGTCGCCCGGGCCTGCCGCGACTATGGGCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGATCCGGCGCAGTGGACCCGGCTCAAGGCCCGGCTGGAGGCGGCGATCGACCCGGAGGCGGACAGTTTGCGCTACTATTATCTTGGGGCCAACTGGCAGCGGCGGGTGGAGCATGTCGGCGCCAAGCCGGCGACCGATCTCGGCGGAACGCTGATCGTCTGATGCGGCGGGGCGTCACGGGTCCGGGGCAGCGCGAACCGCAAGCGTGTCCGGATTCCCTGGGAGGTTCGCGCTGGCCTTACAGGGATGAAAAGATTTGTTTTTTTTCAGGCTGGTACGGGCGAGGCGGCGATTTTGGGCGGTGTTTTGCAGAGGTTCGCGCTGGCGAACGATTTTTCTTTGATCCGGCAACGTGATAGGAGGGGGACG # Right flank : GCCGCCAGCGGGCAGGCCTGCCTGTTGGCGCAGCAGCGAAAGCAGCAGAGCGTCGGCCCGGTCCCGGTGCTGCTGGTGCAGCCGCGTCGCCTCCGCCTCATCGCCGGCGCGGATCGCGGCGAGGATCGCCCGGTGTTCCTCGTCGGAGATCACTGGCAGCGGGCGAAGCCCGGCGATGGCGATACGGGCGCGGTATTGCTGGTCCCAGAGCTGGCGCAGCATGCCCTGCAGGCGTGGATTGCCGCAAAGGGCGGCCAGTTCGGAGTGGAACAAGTCGTCCAGTTCCGACCATTGCGCGATGTCGCCGCGTTTGGTGGCCCGTTCCATCTGGCTGAGAATGCCATCAAGCCGCTGGTAGTCGGTCTCGCTGATGCCACGCCGGGCGGTCAGTTGCGCGGCCTTGACCTCCAGGGTCGAGAACACCTGATAGATCTGTTCGATCTCCTCGATCGACAGCGCCCTGACGGTCATGCCGTGGCGCGGCCGGACATCGACCAGAC # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.00,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 202040-201873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVMG010000005.1 Stappia indica strain SN13-18 SN13-18_ctg005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 202039 36 100.0 29 .................................... TATCCGCGGGGGAGAGATTGTTGCCGTAA 201974 36 100.0 30 .................................... CCATGGCGCGGCGGATCGAGGAAACCCGCA 201908 36 75.0 0 ......................G..G.C.AACGG.A | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Left flank : GCGCCCGAACCGCTTGTCCTCGTCGGTCTGGGCCGGGAAGGGGAGGCGCTGTCATGACCACGCTTTACACACAGAAACGGGGAGAGCGGACGGCGCCGACATACCTGTCCGCTTACAGGCTGATGTGGATGCTCGTGACCTTTGACTTGCCGGTGGAGACGAAGAAACAGCGTGCCGCCGCGACCAAATTCCGGCAATATCTGCTGGATCAGGGTTTTGAAATGAGCCAGTTGTCGAATTATCTGCGGCTGGTGAACGGCCTGGAGCAGTTCGAGACGCATGTGCGCCGGATCGAAGCCAATCTGCCGGAGCGGGGCGATGTCTTCATCTTTCAATTTACCGATCGGCAATACGAAAACATCGTTCGCTTCAGCGATCAGTCGCGCCGCGCGCGCAAAAAGAATCCCGAACAGATCGCGCTTTTCTAGCAAAGGCTGGGCGAATTTGCCGCCGAGAAAGGCCCAATCCGCTTGGGTTTTCAAGGGATTGGGCCCTTATCT # Right flank : AACGCCGGAGCGTCGGGCTTCTCAGCCCAGACACCCCGGCGCTTCAGAGCAAGGTTGCCGATTACTTTTCGGCGCAGGCGCGGATCTTCTCCAGATCCGGACCGTTCGGCGTGCGGCCGAGATTGAACGGCGCGGAGGCATCGCGCCAGCCGCTGTAATCCTGCAGGTAGCTGAGCTGGCTGAGGTAGACCTTGGCCGAGGACGGGTTCTCGCAGGCGGTGTCCTCGATCACCTTGTTTGCCATCAGCTGGACCTTCTCCAGCGTCTCGTCGTCATAGCGGGTGATTTCGACGCCCGCTTCCTGGAACTGCCGGTAGGCTTCCGAGGCGCGCTTTTCCGTGAAGGCGAGCGACCACAGCAAGGTGGCGTCGGCCGCGATCTTCAGCTTCTCCTGGGTCTCCGGCGACAGCGCGTCCCAGGCCTGCTTGTTGATCATCACCCCGAACACCGAGGCGGACTGGTGCCAGCCCGGGGTCGCCCAGTGGGTCGTGACCTGATGG # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //