Array 1 178567-177339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLK010000001.1 Pasteurella multocida strain PMS 19 NODE_1_length_194498_cov_44.855038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178566 28 100.0 32 ............................ GATTTGATAGACGATGGAAAAGAATCGTCAGT 178506 28 100.0 32 ............................ TTGCCCAAGCTACAAGGCTTATGGTCACCACA 178446 28 100.0 32 ............................ ATTTCCGTGTTTTTAGACGACCTTCAATATAC 178386 28 100.0 32 ............................ CTTGGCTATCTCTTTGCTTGGATGTCTTGGGA 178326 28 100.0 32 ............................ AACTGGAAATTGTGGAAACAGGAATATCAAGC 178266 28 100.0 32 ............................ TTCTTGCGTCACCACTTTGTGACGCAGGTTAG 178206 28 100.0 32 ............................ TACAGAAAATTCACCGCTTTTATCACTAGATA 178146 28 100.0 32 ............................ CTACCCAAAGCGGTGAACAAGAGATGATTTTT 178086 28 100.0 32 ............................ TTTTAACCACGGGCGGTCTAGTGCGTTTTTTA 178026 28 100.0 32 ............................ ACGGCGGCGTTGTTGTGAAAGCAGATGAACCA 177966 28 100.0 32 ............................ CGGTGGTGGCGGTATTTATCAGTAACGTAACA 177906 28 100.0 32 ............................ CAATCATCAACGATGATATGAGCATGTTAACG 177846 28 100.0 32 ............................ ATGCTTTAAAGAAAGTTGGCGTAATGACCAAC 177786 28 100.0 32 ............................ AAATCAAATCAAAATGGATTTGAAAACAGTAG 177726 28 100.0 32 ............................ TATACAGATGAAAATAGTGGTGGAAAAACACG 177666 28 100.0 32 ............................ AGAGCTTGATCGTGAAGAAAGTATTGTGTTCT 177606 28 100.0 32 ............................ AATCGCCGCCGCTATTCGACCGGGTGCGCTGA 177546 28 100.0 32 ............................ GTTGATAATGCGACCAGCTCAAGTACAGCTTG 177486 28 100.0 32 ............................ AAAAGAACATCAAATTAGAGGACAGCCAGGTA 177426 28 100.0 32 ............................ TAGCGTGCCACTTAATCGCCTAGATATAAAAG 177366 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGTACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATCGACTAGATAGTGTAAATCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18592-18325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLK010000008.1 Pasteurella multocida strain PMS 19 NODE_8_length_114702_cov_54.238303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18591 28 96.4 32 ............A............... TCTCGGCATAATGTTTCTATAACGGAGGCATT 18531 28 100.0 32 ............................ ATGCACTTTCAACCACTTAAATCCGGTCTCAC 18471 28 100.0 32 ............................ ACTACGACAAGATTGCCGCAAAAACGGAATGT 18411 28 100.0 32 ............................ GAAAGCCAAAATCTATGGCCACCGAGATTTAT 18351 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTTAGAAAATGCAGGGATTGATATGTGGGGGGGTCGAGTCGTTAACTGCCGTATAGGCAGCTTAGAAATTGTTCATGAATCTAACTTTCACATGTTTTAAGTTAACTGCCGTATAGGCAGCTTAGAAATAACACCTCGTCCCATAAAGTTACTAAATGGTGTTAACTGCCGTATAGGCAGCTTAGAAAAGCATCAAACCACAAACGCTGATAATTGAACAGTTAACTGCCGTATAGGCAGCTTAGAAAACATTCAAGCTACTGGTCAGAAGTTGTTAGACGTTAACTGCCGTATAGGCAGCTTAGAAAACATTCAAGCTACTGGTCAGAAGTTGTTAGACGTTAACTGCCGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCTTAGAAATCATCGGGCAATTGCCCAGATTTAGCGGAGTT # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGACCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19592-18784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLK010000008.1 Pasteurella multocida strain PMS 19 NODE_8_length_114702_cov_54.238303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19591 28 96.4 32 ............G............... AGAAAGCCTAGTCGACACTGTGCGTCGATCCT 19531 28 96.4 32 ............G............... TTCAAGCCAAAAAGATGCAATTCTCGAGTTTC 19471 28 96.4 32 ............G............... GATCGCCGCCGCTATTCGACCGGGCGCGATGA 19411 28 96.4 32 ............G............... AAACGAGAGAGAAAGAATCTTATCTGCAGTCA 19351 28 96.4 32 ............G............... TGTTGTTAATCTTTATGATAAGCACTATGTAC 19291 28 100.0 32 ............................ TAGTTGACCAACAGGTCGCTTTAGAGCTTGAA 19231 28 100.0 32 ............................ AATAAAGGTCGCTTTGTTGACAGAAAAGAAGC 19171 28 100.0 32 ............................ AGAATTTCAGAGAGAAACACCGCTTGAGTTAA 19111 28 100.0 32 ............................ ATGCAGGGATTGATATGTGGGGGGGTCGAGTC 19051 28 100.0 32 ............................ TTGTTCATGAATCTAACTTTCACATGTTTTAA 18991 28 100.0 32 ............................ TAACACCTCGTCCCATAAAGTTACTAAATGGT 18931 28 100.0 32 ............................ AGCATCAAACCACAAACGCTGATAATTGAACA 18871 28 100.0 32 ............................ ACATTCAAGCTACTGGTCAGAAGTTGTTAGAC 18811 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTTAGAAAATGAACTTTCTTCACTAGTGAACTTTCTTCACGTTAACTGCCGTGTAGGCAGCTTAGAAAGGTATATCGGCATATCAATTCACAAAAAGCAGGTTAACTGCCGTGTAGGCAGCTTAGAAAAAGACGCTTTGCTTGTTTTAGCATTTTTGATAGTTAACTGCCGTGTAGGCAGCTTAGAAAAATACCGTGTAACGTAGCATTGGCTTTTTTCTGTTAACTGCCGTGTAGGCAGCTTAGAAAGAATATACAGATTCGTAATATCGTATCTTAAAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCAATAGTGGACCACGCAAAACGGGTGATAAAGTTAACTGCCGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCTTAGAAAAGAAGATGTGGACGGTGAAGGTGACGGATTTT # Right flank : ACATTCAAGCTACTGGTCAGAAGTTGTTAGACGTTAACTGCCGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCTTAGAAATCATCGGGCAATTGCCCAGATTTAGCGGAGTTGTTAACTGCCGTATAGGCAGCTTAGAAATCTCGGCATAATGTTTCTATAACGGAGGCATTGTTAACTGCCGTGTAGGCAGCTTAGAAAATGCACTTTCAACCACTTAAATCCGGTCTCACGTTAACTGCCGTGTAGGCAGCTTAGAAAACTACGACAAGATTGCCGCAAAAACGGAATGTGTTAACTGCCGTGTAGGCAGCTTAGAAAGAAAGCCAAAATCTATGGCCACCGAGATTTATGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 21615-19784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMLK010000008.1 Pasteurella multocida strain PMS 19 NODE_8_length_114702_cov_54.238303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21614 28 100.0 32 ............................ CAATCTACCGCGTATTCTGCTCGAAAAGCACA 21554 28 100.0 32 ............................ TTGTTTACGTGTATCGCGCACCGCTTTGATAA 21494 28 100.0 32 ............................ ATTCTCAAACTTCGATACTGTTAACTCGTGGT 21434 28 100.0 32 ............................ TTATTTTGTGTTGTGGTATTAAAAATATACAG 21374 28 100.0 32 ............................ AAATCGCAATGGGCTTAATCGGCTCAGATAAA 21314 28 100.0 33 ............................ TTGATTTAATGAACTTAATGTAGGATAAACTGG 21253 28 100.0 32 ............................ AAACTGGATTTCAGGAGGGTGGTGTATCATAC 21193 28 100.0 32 ............................ AACTCATACTCAGGAGAAAAAATGATGAGCAA 21133 28 100.0 32 ............................ TTCATAATATAAATCGTTAATCTCTTTTAAAT 21073 28 100.0 33 ............................ GTGTGTATGTTGCGGTAAACAAGCAGATGATCC 21012 28 100.0 32 ............................ GCTATCTTTATTAAAACCAACTGACGATTCTT 20952 28 100.0 32 ............................ ACAGTTCGCCAAGCAATCCAAAATGGGGTGAT 20892 28 100.0 32 ............................ TTTAAAATCAAGACTATCCATTTTTGGATAGA 20832 28 100.0 32 ............................ AACGGGCGCAATGTCGTCCCATTTGTCACGTT 20772 28 100.0 32 ............................ GAATTGACCAAGTGATAAGCGTTTTTGAACAT 20712 28 100.0 32 ............................ AATGGCTTACACCCATCCACAGAACGGACAGA 20652 28 100.0 33 ............................ ATGATCTAATCACAAAGCACAGACCACCAGAAG 20591 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCTGCTCTGTCATTT 20531 28 100.0 32 ............................ ATTTTGGGAAAAGTAAAGTAGAATAGGAAATC 20471 28 100.0 32 ............................ ACCACCCCTGACGCTCTGTTTTCAAATCCTGC 20411 28 100.0 32 ............................ ACCCAAGCAAAACATTGATTGATGGACAAATA 20351 28 100.0 32 ............................ TGATGATGTGCGTCGCTTGTTCAACGAGCGAC 20291 28 100.0 32 ............................ AATATCGCCCCAGCTTAACTGCGCAAAAAAGC 20231 28 100.0 32 ............................ GCAATAGTGGACCACGCAAAACGGGTGATAAA 20171 28 100.0 32 ............................ AGAGCACCATTCATAAAAAGACGGTTTTTTAG 20111 28 100.0 32 ............................ ATGAACTTTCTTCACTAGTGAACTTTCTTCAC 20051 28 100.0 32 ............................ GGTATATCGGCATATCAATTCACAAAAAGCAG 19991 28 100.0 32 ............................ AAGACGCTTTGCTTGTTTTAGCATTTTTGATA 19931 28 100.0 32 ............................ AATACCGTGTAACGTAGCATTGGCTTTTTTCT 19871 28 100.0 32 ............................ GAATATACAGATTCGTAATATCGTATCTTAAA 19811 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACATCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : GCAATAGTGGACCACGCAAAACGGGTGATAAAGTTAACTGCCGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCTTAGAAAAGAAGATGTGGACGGTGAAGGTGACGGATTTTGTTAACTGCCGTGTAGGCAGCTTAGAAAAGAAAGCCTAGTCGACACTGTGCGTCGATCCTGTTAACTGCCGTGTAGGCAGCTTAGAAATTCAAGCCAAAAAGATGCAATTCTCGAGTTTCGTTAACTGCCGTGTAGGCAGCTTAGAAAGATCGCCGCCGCTATTCGACCGGGCGCGATGAGTTAACTGCCGTGTAGGCAGCTTAGAAAAAACGAGAGAGAAAGAATCTTATCTGCAGTCAGTTAACTGCCGTGTAGGCAGCTTAGAAATGTTGTTAATCTTTATGATAAGCACTATGTACGTTAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //