Array 1 262374-267163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDD01000013.1 Corynebacterium glutamicum strain CICC10065 Contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 262374 29 96.6 32 ............................G TGGGGCATGAAAAAATGCCCCCACACCGTGAT 262435 29 96.6 32 ............................G CTGAAAATGGCCGGTGCGAAGGTGCGCGATTT 262496 29 96.6 32 ............................G ATTTCACCACTAGTGCGGGTCTCTGCGGAATC 262557 29 96.6 32 ............................T GACGGTGTGGGTGATGGTGCTGTCACGCTCCA 262618 29 96.6 32 ............................G CGTTGATAGCACCCAAATTCCCAGCACCCTCA 262679 29 96.6 32 ............................G GTGATCATGGAATCAATCGCAAAACCATGAAC 262740 29 100.0 32 ............................. GAATGGGCAAAAAACGGCGGAAGTTTCGCGTC 262801 29 100.0 32 ............................. TGGCCGTCATCGTATAGGGGACTAGGCCGTGC 262862 29 96.6 32 ............................G CTTTTGATCCGCAACCAACGAATTGATCTCAG 262923 29 96.6 32 ............................G ACGCGCAGGATCAGCGATTGTCTCAGTAACAG 262984 29 96.6 33 ............................A GCTTATCGTCCCTGATTCGGTATTTGATCTGGC 263046 29 96.6 32 ............................A GCCCCTGTGCGTGCCTGGTGCGCCACCGCATA 263107 29 96.6 32 ............................T GCGTTTGCGACTGGGCTCAAGGTAGGTGATTG 263168 29 96.6 32 ............................T GAGTGATTTGATTGTGTCCCCGCACATGCTGC 263229 29 96.6 32 ............................G TCACCGTGGACGTAACCGTCACCCTGGACCAC 263290 29 100.0 32 ............................. AGATGGGTGGAAAAGGTGCACGCGCACCAAAC 263351 29 96.6 32 ............................G ATCAAAGCACTCATCAAGGACAAGCAACTCAA 263412 29 100.0 32 ............................. TATCCAGTCCTAATCAACGCGATCATTACTCG 263473 29 100.0 32 ............................. TGTCGTCATCGTTGATGAGATTTGCTGAGTTT 263534 29 96.6 32 ............................G GGCAGCGGCGTTCGCAGAGGAGTTGACTGCAG 263595 29 100.0 32 ............................. AGCTCCCCCTGCTCGGCAGGCTGTGGGTCACT 263656 29 96.6 32 ............................G GTGGAAAAGGCGAAAGCTAAGGTCACCGACGA 263717 29 96.6 32 ............................G GATTCATACACGCTGACTAGCGGTTTTGGCCC 263778 29 96.6 32 ............................G GTATTGCTTGTGGATCCAAGTGACCGGATTCC 263839 29 100.0 32 ............................. CGCCCGCCCGGATCACGCCAAAGATGGCGAAT 263900 29 100.0 32 ............................. CGCAAACAGGATCGCGTGAAGCTCACCGAGCC 263961 29 100.0 32 ............................. AGCGCATGCAGCAGAACCAGAACGCGCCTGCA 264022 29 100.0 32 ............................. ATGGTTGGGTTCCACCACCGGGAACCCGAATA 264083 29 100.0 32 ............................. CGAATACAAGGAGGGGTACGCCAAGGCGAAGA 264144 29 100.0 32 ............................. GCCATAGTGTCCTGCCAACGCCCATAAGACGA 264205 29 100.0 32 ............................. CATTGTTTGTGGTTGTTCATGTAACTCATTAT 264266 29 100.0 32 ............................. AAGGGTTCGTTGGCGGTTCAGGCTGCTCAGAA 264327 29 100.0 33 ............................. GGTTTGGCAACCGACGTTGAGGAAGCCGCTGAC 264389 29 100.0 32 ............................. CCAAGGTCATCGATCTGGATTCGGCCAGTCTG 264450 29 96.6 32 ............................G TCCGGCACCATCGTTCTTGAGGCGGGTGACAC 264511 29 96.6 32 ............................G GCAGGTGGAAACGGATTTGGTACAGGTTCCCC 264572 29 96.6 32 ............................T GCGGCTTCCTGTCGATCCTCTTGTGCCATGCC 264633 29 96.6 32 ............................T GACGGTAAAGACTTGCAAACGCTAGTGGGTAT 264694 29 96.6 32 ............................G GCCAGCGGAGTGTGGTTCAATACCGACACCTT 264755 29 100.0 32 ............................. CCAATTTAGGAGACACTAATGGATTTGACCAC 264816 29 96.6 32 ............................G CGAAGCGGGAAAGCTCGTAATCTTTTTGCTTA 264877 29 100.0 32 ............................. AAGAATATTAGACACTTTCGTCTTACCCTCCG 264938 29 100.0 32 ............................. CGATTGCTGCATGGCCTCGTGGTAAGGATTCA 264999 29 100.0 32 ............................. CCAATGCACTCCGTCGGTGCGCTTGCCCTGCA 265060 29 100.0 32 ............................. CGCCTACCGCAGGAACCATCCAGTGGTTCCCC 265121 29 100.0 32 ............................. GTCGTTGAGGGCTTCGTTGCGCTTAAAGTCGG 265182 29 100.0 32 ............................. GGCGCTTTTACCGGCCACGGCGGGACTCCTCA 265243 29 96.6 32 ............................T AATATCGGAACCAGTTGTGCTTGGATCTAGCT 265304 29 96.6 33 ............................A ACCGACTCAAGCAATAGCTTGGAGGTTCGACTC 265366 29 96.6 32 ............................T TCAGCTACAGCATCACCTGTTTTATCAATCGC 265427 29 96.6 32 ............................G CTGCTCAGACAAGTAATCAGCGATCTCCCTTT 265488 29 96.6 32 ............................T GTTGGTTGCACCTTTAATAGTGGGCGGCACAT 265549 29 100.0 32 ............................. GCGGTGTACCGGGTGGAGCACACCTGGATGCC 265610 29 100.0 32 ............................. TCAAACCTGGACGATGTCCTCCGCAAGAGCAA 265671 29 96.6 32 ............................G CTCTCCACTGGATCTACGCTCTCAGTGGAGGG 265732 29 96.6 32 ............................T GCTGCGACCACGACCGTGGGCCATGTGCAGCA 265793 29 100.0 32 ............................. GACCGTGTGGTACGACTGGGTGTGGGTGCCGT 265854 29 100.0 32 ............................. TCAATCATCGGCGGTTCTTGAAGCGTTGCACC 265915 29 96.6 32 ............................G TAATAGCAGTTTTGGTGATTTTGACACTGAGT 265976 29 100.0 32 ............................. CGCCGATTCAGTGCCCGAGTGGTGGCCTGAGT 266037 29 96.6 32 ............................G TGGGGGTTGGACACCTATGCGGAGATGAGTGT 266098 29 100.0 32 ............................. TACTTCAAGCCCCGCCCACCAGCGGGGCTTCA 266159 29 96.6 32 ............................G TGAGAGCGCCGGTAACAATATCCCACTCAAGC 266220 29 100.0 32 ............................. TCAAACCTGGACGATGTCCTCCGCAAGAGCAA 266281 29 96.6 32 ............................G TAGCGCATGCCATTGTGTCTAGCGCTGCGGCA 266342 29 100.0 32 ............................. ATCTAAGACAACATCTCTGAAATATGGCCTCA 266403 29 100.0 32 ............................. GCGTCACCGGCAAGGGATTGCACCTGCCCCTT 266464 29 96.6 32 ............................G TACAAGTATTTGCTTGATCATCAGCGGGCTTA 266525 29 96.6 32 ............................G GCGAAGAGGTGCCATCGCTAACACAGGAAAAC 266586 29 96.6 32 ............................G TTGGCGACCACATGAAAACCCAATGCTGATTC 266647 29 96.6 32 ............................G GTGACGTCGATTTCGATGGTCTCCACCTTCTC 266708 29 100.0 32 ............................. CGGATGCCCCTGAGCGTCTCATGGGTTACCGC 266769 29 100.0 32 ............................. GTGGTATTCGGCTCAGGAAGCTTTGGATGCGG 266830 29 96.6 32 ............................G GCTTTCTTGGAGGCGCAGCAAAAATACAACCA 266891 29 100.0 32 ............................. GTAATCGCGATCGTCGTGACCTCATTGACAGC 266952 29 96.6 32 ............................T GATCCATGGGCTGCAGGCAGCTGGTCTGGGGT 267013 29 96.6 32 ............................G TTCCTCATCCCGCTGACGGTTACGCACCTCTT 267074 29 96.6 32 ............................A TCGATGTCAATCCAAGCGCCCGGCTCATCAGC 267135 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 79 29 98.1 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : AAGAATTTTGGGCCGATATTGTCCAGCTTTGGGATGGAAATGATCGACGCGTTTCCGGAGGCACGAATTATGGGGATCCTGTCCATTTTCCGGAGTCAGAAAAATGATTACCGTTATATTATCTTCACCTCCCGAAAAATTACGCGGGCATCTAACCCGCTGGCTTATCGAGGTAAGCCCTGGCGTATTTGTAGGTCGCCCTACAGCCAGAGTCCGAGACGAAATATGGGACATGATCGTATCCACTCTTACCAATGGACGAGCAGTTATGACATTTCCGACTCGCGACAATGAACAAGGTTTTGACATCCGCGTACACCGCAGTCAATGGGAGAAGACTGACTTCGAAGGTGTCACCCTAATGCGACATCCTATATCGACAGCAAAAGGTTCGATGAAAGCCGGGTGGTCGACAGCTTCACAGCATCGTGCTGCTCGTCGACGCAAAGCAAAATGATATAAAATGACGAAAGGACCGAATATTTTCCCTGGTTATTTAG # Right flank : GACACGGTTGCCGAAGCGTGTGTGTTTTGTCAACTTTTTATCGGCCAAAAGAGCACGGAAAAACCTACCACTTCAGCAGTAATACCCGCCAAAAGAGCACGGCGGGTTAACTACCCTTAATTAGCTTGATCAACCTGGATATAAATCCGGTCTCTTAGCTGGGTGATCTTGTTCAGGACCGTGGGGAAATGATCACCATCATCAGCACCTAAATAAAGCTCTGCAAGCCGTGCTACCGCCATCTGGGTATCAACATCAGCAACCCGCAAACTTGATTCGATACAAGTCAACAGATCCATCGCTTCGGTGAGCAACACCTGCTCATCCCGAGGAAAACATAACCGGTCTTCGGTAGTTGTAGGAATAGATATGGTCATGAGAAAAAGTCTCCAATCATCATGGATTAAGTAAAAGGACTTAGCTCATCAAGGCATGCTTGACGCGGTAGGATTCTCCACTAAAGTGCAGCAACCTCCCGTGATGGACAATCCGGTCAATCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 270086-273049 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDD01000013.1 Corynebacterium glutamicum strain CICC10065 Contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 270086 29 100.0 32 ............................. TACTCACCGGGTACACCATCAGTGAGGGGATG 270147 29 100.0 32 ............................. GTGTGTTGGCTGCGGAGTCGAATGTTCTTTTG 270208 29 96.6 32 ............................G GCAAAGGAAGAGCGAATCCAGATCGCAAAGCG 270269 29 100.0 32 ............................. CAGTGCCGATCAGGTAGATAAACTCAAGGTTG 270330 29 96.6 32 ............................G TGTTTCCAGCACTCCCGGGGGCCGTTCTTGTT 270391 29 96.6 32 ............................G GATGAATCCGTTCAGCTTCGCGATGGTCGTTG 270452 29 100.0 32 ............................. ATCACCAGGCCACCACAAACCAACCGAAATAT 270513 29 100.0 32 ............................. GAATCGACGCTTTTAATCGCGGAGGGGTCGAA 270574 29 96.6 32 ............................G TTCTTCTGGCGAAGCGGACGCAACCAAGGTTC 270635 29 96.6 33 ............................A GGGTGGCAGGCTGAATGCCGAGATATACAGGGT 270697 29 96.6 33 ............................A GGATCGTAATCGCGTGCAAGTCGGACGCCTGCT 270759 29 96.6 32 ............................G GCGTGGAATGCGTACCGGAAGGGTGAACAGAT 270820 29 100.0 32 ............................. TGCGCAGCAGTCTGCCCGCCCATATGAGCAAT 270881 29 100.0 32 ............................. CTCACATCTTTAAGTAGCTGCATAACCTCAGG 270942 29 96.6 32 ............................G CTCAGCCTTAATTTCTTCCACATCAAGCCCCA 271003 29 96.6 32 ............................G TAGTAGCCTCCGGAACACCAGCCAGGACAGTC 271064 29 96.6 32 ............................G TTTGTCTACCTGATCGGCACTTGTTTTTACCT 271125 29 100.0 32 ............................. GGTCGCGCCTGCTGCGATACCCAATGCGCTCA 271186 29 96.6 32 ............................G CCTCCTGATTAAGATTCGGCCAGATGTGATGT 271247 29 100.0 93 ............................. ACGAGCGTGGCGCTGCTCTGTATCGCCGATTCGACGTGTCGTCTCGGCTCCAGATGGTCCCACGAGCGTGGCGCTGCTCTACTGCCTGCTTTT 271369 29 96.6 32 ............................G TCTCCCCCATTACCGTGGCCGTCGACAAGGCG 271430 29 96.6 32 ............................G GTGGTCGTTACTACCCCGGACTTTGGGGACCG 271491 29 100.0 32 ............................. TCCGTCAGCATCGGCTGCCACTTCCTCTGAAA 271552 29 100.0 32 ............................. TGCTGGTTAAACTTCGCCCCTCCTATATGTGG 271613 29 100.0 32 ............................. TGCGCTGGTCATGGTGATCGGGGCAACTGGGC 271674 29 96.6 32 ............................G CACCACCTATTGCCTGAGCAGCACCACCAATC 271735 29 100.0 32 ............................. CACAGTCAATGAATCGGCCATCGAACCAATCA 271796 29 96.6 33 ............................A GTACCTTTCTCCGCACCTGGCCTAGCGGGTGTA 271858 29 100.0 32 ............................. TACTGGAAACCATGCTTTCGCAGCTTGGAACA 271919 29 100.0 32 ............................. GGGGCCGAGCGTCGCTCGCACTGTAAGATCAT 271980 29 100.0 32 ............................. TGTCGTCCCAATCTTCACCTGGGAAGTGCTGA 272041 29 100.0 32 ............................. ATTATTTCAAGCCCCGCAATGACGCGGGGCTT 272102 29 96.6 32 .....................G....... TATGTCACGTTTAAGCAAGCCAGCGACCGCAT 272163 29 96.6 32 ............................G GATCTTAGGCAGCTGGTTCTGGGGTGCACATC 272224 29 96.6 32 ............................G ACTATGGATGTGGGCACGCTCTGGGAAGAGCA 272285 29 100.0 32 ............................. ACATCGAGCAGCATCGGCCCTGTGGATCTCGG 272346 29 100.0 32 ............................. AAGGGCACGTGTCTGCGGGGTGGCTAGGTAAG 272407 29 96.6 32 ............................G TGCTATGCGTATGCGACAGTGGTGCTTTACCG 272468 29 89.7 33 ...................A...C....A GCTGTGCCCAGGTTTTACTAACGTTGGTCGCTG 272530 29 100.0 33 ............................. AAGCTCGACCATCTCTGGGTTAAAACTAACCTC 272592 29 96.6 32 ............................G TCCTGAAAGTTTGGATGTGAGCTTGTCGACGT 272653 29 96.6 32 ............................G GCCACACCATCTAAACAGGAAAGAGTGCCAAA 272714 29 96.6 32 ............................T GGTGCCCCGGCTGAGGTGGTGGCGCATGTGGC 272775 29 100.0 32 ............................. ACTATGCTTGCAGCTTTGCGTAATCGCGATGT 272836 29 100.0 33 ............................. TCTCAAGCCTTTAGTACTCGGCAAGCGCTTCCC 272898 29 100.0 33 ............................. TCTCAAGCCTTTAGTACTCGGCAAGCGCTTCCC 272960 29 100.0 32 ............................. GCGCAGCAAATCAGGATTACTAAAGAACCATA 273021 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 48 29 98.2 33 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : TTCTTATCGTCTTCAAGCCAGCCGTTGATGATGACGTCGAGTCCATCGAGTGCTTTGATACCTGGGCGTTTGGTGGGTGTGGGTGGTGTTGGTGAGAAGTCTTCGATGTTGGTGTATTTCGCTACCGTGTCGCGGCTGATACTAAGCCGGCGGGCGATTTCACGGTTGGAAACTCCCTGAGAGTCGAGTCTCCTGATATCTTCTACAACGGTCATGTGTACCGTCATCTTCTTTCGTGTTCCTTCCTGTTAAGACGCTCCGCTTGTGAAAAGGGTTGGGAAGCGTCGAGGAGGAACTTATCTAACGGTGGCGGTGCACATGACCGTCAGGCTTTACATAGATACTTGAGCATGCGGTGAGGACCGGCCACCTGGTGGGTGTGGGGAGGTGGCTGGTTTTTCGTGCTTTTTTGGCAGGAAACCAGCCGCTGATTTGGCCGGGTTCTTCTGCTTAACTGGCCTACAAACAGTTGATCACACACAGCGTGGGGTGAGCTTACC # Right flank : CATTATCGGATCAGCTACTCGAGTGCCTCGCTGCGGCCCACCCTTAGAAAGATGTGCGACAGGCCCCTGACGGATCCGCACCGTTTTCCAGTCCCGGCGCGCTCCGCGGCCATCTGTAGTCGCAAGTCATGGGAGATCAACCCACATCACAAACTCGGCAAAAGCGAACTCACTTGTACCATCATCGTCAGCAGCTGCGAAAACTAGGTAGTGAAACCAATCGAACGCCCCTGCCCCACCTGGTTTTAAGCCCAATGATCAACATTAGGCCTGACTCTCCTTGGTGCGTGCCCCACGACGACTAGATTCCAACGTCGCGGTCAATGTACGTGCATCATAGCTTCCAGTCATCCGGTAACCATCAATGAAGAACGTCGGGGTCGCATGAGCGCCACTTGCTGCAGCACTAGCAACATCCCGTTCGACCCTCGCGGCAACTTCAGCACTGTCTAGGTCTTTAACGAACGCCTTGACATCGAGACCGAGTTCAGTCGCGTAAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //