Array 1 1769926-1770746 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHL01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2016LSAL00028 2016LSAL00028_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1769926 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1769987 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1770048 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1770109 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1770170 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1770231 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1770292 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1770353 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1770414 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1770475 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1770536 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1770597 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1770658 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1770719 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1787387-1789247 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHL01000005.1 Salmonella enterica subsp. enterica serovar Derby strain 2016LSAL00028 2016LSAL00028_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1787387 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1787448 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1787510 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1787571 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1787632 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1787693 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1787754 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1787815 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1787876 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1787937 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1787998 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1788059 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1788120 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1788181 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1788242 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1788303 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1788364 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1788425 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1788486 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1788547 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1788608 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1788669 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1788730 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1788791 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1788852 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1788913 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1788974 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1789035 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1789096 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1789157 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1789218 29 93.1 0 A...........T................ | A [1789244] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //