Array 1 1343596-1347408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033903.1 Trueperella pyogenes strain TP2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1343596 29 96.6 32 ............................G GTCCTTGTGGAGCATATTAATGCTCATCGTCC 1343657 29 96.6 32 ............................G CGGCGCCAGATAATCACCAATCTCATCGAGAA 1343718 29 96.6 32 ............................G CCTGCCCCTCGCCGACCTTGCACAGCTCAGTT 1343779 29 100.0 32 ............................. GCCGGATAAGACCCCGAACTTGTATGAGCTTC 1343840 29 100.0 32 ............................. ACACGCTTAGCAGTCTCAGTTAGCTCCTCAAC 1343901 29 96.6 32 ............................T TGGCTACTGCGTTTGAGCTCTATGCGCGTGGA 1343962 29 96.6 32 ............................G TCGGCTTCTGCGGCGAGCTTGGTGGGTGGGTC 1344023 29 100.0 32 ............................. TCCGTCATTGACCCTATGGAGCATTTCCGCTC 1344084 29 100.0 32 ............................. CGGCCTCGATCCTGCCGATCCACCGCTTGCGC 1344145 29 100.0 32 ............................. ACCATCGCGCTCGCGGACGCAGGATGCTTGTA 1344206 29 96.6 32 ............................G TGATTCCGGACACGTGCAACCCCTCGGCCATC 1344267 29 96.6 32 ............................G TCTCACCGCAATCGATATAGCCCTGCGGCGGG 1344328 29 96.6 32 ............................T CAATGTGGTCACGAAAAGGCCGGATGAGAAGC 1344389 29 100.0 32 ............................. TAATATCAACACCGTAAGCAATCACGCCCCGG 1344450 29 100.0 32 ............................. GAAACTGATGAATATGAGCAGATCCGCACCAT 1344511 29 96.6 32 ............................G CATCGACACGCGCCCCGCTAGAGCCGCCTCGT 1344572 29 100.0 32 ............................. TGCTCAACCGCCGTACTCGCATCTAACGATTT 1344633 29 93.1 32 ...........................TG CGGCGGCGTCAGCCTCTCAAGCATCAGAGTCC 1344694 29 96.6 32 ............................G GTGGCTTCTGCGGAGACCGTATCAGGCGTCAA 1344755 29 100.0 32 ............................. AATCACCGCAACCGGCGTGATCGACGTGCGTG 1344816 29 100.0 32 ............................. AGCACCCTGGCGGCCACGTTAACGCTGAATGA 1344877 29 100.0 32 ............................. TAGTCCGGCTTTCATCGCCTTGCCAGCCTTGG 1344938 29 100.0 32 ............................. GAGACATCCCGTGAGAATCTCCCGTTCCGCCC 1344999 29 96.6 32 ............................G CACGGTCGCATGCTGAGCGGGCTGGTGAGAGC 1345060 29 100.0 32 ............................. GACGACTCCTTACCCGTACCTACAGCGCGTTT 1345121 29 96.6 32 ............................G GTCGGCCGCGCGGGCGTCGCGAATGGCGGTGA 1345182 29 96.6 32 ............................T TCGGCTCCATCCGGCGAATCATCACTTGGGCA 1345243 29 96.6 32 ............................G CCGCTAGGCAAATTCGATAGGAGGTGCAAGGA 1345304 29 96.6 32 ............................G GACAAGACATGTACAGTTTCGAAACCATCGCC 1345365 29 96.6 32 ............................T CAGCCTTCGCGCGAGTATTCAGAGTGGATTGG 1345426 29 96.6 32 ............................G TTTTGGGCAGGGACTTTAATGCTGGTGCCAAG 1345487 29 96.6 32 ............................G CAAGCCAGTGAGCGTACACATTTCTCTGTCGG 1345548 29 96.6 32 ............................G CTGGACGCTCACTCAAATCAGTATCAGACGAA 1345609 29 100.0 32 ............................. AATTGCAGGCGGCGGCTGGTGTGGCCAAACCG 1345670 29 100.0 32 ............................. TGACACACCGGCTGAAGAAGGTGCAGGCTGAA 1345731 29 96.6 32 ............................G TACCAAAATAGGCAATGTTCGCTAGAGAGCCG 1345792 29 96.6 32 ............................G GACATCCCGAGCTCGTCCCTGCGCGCGGCAAG 1345853 29 100.0 32 ............................. TTTTTAGCCTGCGACCTTCTGGTCGAGCACGA 1345914 29 96.6 32 ............................G TGGTTTTGCCGTCCGGGTCATTGGCAAAAAGG 1345975 29 100.0 32 ............................. CAGCCGTCCATTTCGGGGTCCCACGCCAGCTC 1346036 29 100.0 32 ............................. GATCAAGCGACGGGAGTGGATGTACAGGCCAG 1346097 29 100.0 32 ............................. CTGGGACGCTATCGACCTGGATAACGGGACGC 1346158 29 100.0 32 ............................. AATCGACACGACGACACGGCCAGAATCAAAAC 1346219 29 100.0 32 ............................. TTGAATGATAATGATCCACTTGAGGTTCGCCC 1346280 29 100.0 32 ............................. CACCACCATCAACGCCACGAGTAACGCCAATA 1346341 29 100.0 32 ............................. GGTCCCACGCGCGGGCCAGGCCACGCCGTATG 1346402 29 96.6 32 ............................T TACAATGAAGTTCTTCGGCTCCGATGGCACAC 1346463 29 96.6 32 ............................G ATCTAGGCCTCGGCGTCTAATCGCATGGGAAG 1346524 29 96.6 33 ............................A ACGCCGTATGTAACAAGCCTGCCAGTGAGGAGC 1346586 29 96.6 32 ............................G CCTACGAGGCAGCAAAGGCGGCCATGCTATGA 1346647 29 100.0 32 ............................. GCGTTTACCGGCAGCGGTTTTCGGGCGCTTGA 1346708 29 100.0 32 ............................. TGCGCCCGTGTTGGACGAATCCAGCATAGACA 1346769 29 100.0 32 ............................. CAAATTCTGACCGCTCACATCTGCCGCGACTG 1346830 29 96.6 32 ............................G CAAAGCACGCACGCGCCGTTTCGAAGCAACCA 1346891 29 100.0 32 ............................. TCACCGCACCTCACCCCCGCGCGGCCACACAC 1346952 29 100.0 32 ............................. CGTCCGCACCAAGACAGAAGCCCGCCAACTCC 1347013 29 96.6 32 ............................G TCCCAGCGCAGTTCACGCCGTCAACGGGCGGT 1347074 29 100.0 32 ............................. AGCTAGCCGCCGGACTGGGCGACATCCTTTCC 1347135 29 100.0 32 ............................. CTGCGAGGAGCTAACCTGCGATACGCTAACCT 1347196 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 1347257 29 96.6 32 ............................T AACCACTGGTGCTGCGAGCCTGGCCAAGCCTC 1347318 29 96.6 32 ............................T CGTGTGCTTGATAAGAAGCAGTTATCTGAGGA 1347379 29 93.1 0 ..........................T.A | C [1347404] ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.2 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGGTGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGATTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTAGATTACACGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCCTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAAGT # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCGAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCGGGGTCCCCATTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTGGTCAAAGTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //