Array 1 222628-224312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLI01000045.1 Streptococcus agalactiae strain IMMI_409 ctg7180000001652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222628 36 100.0 30 .................................... AGAGGTGAACAGGACTTGATTGATAATCCT 222694 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222760 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222826 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222892 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222958 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 223024 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 223090 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 223156 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 223222 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 223288 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 223354 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 223420 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 223486 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 223552 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 223618 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223684 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 223750 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 223816 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 223882 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 223948 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 224014 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 224080 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 224145 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 224211 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 224277 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //