Array 1 6302-5969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGS01000134.1 Leptospira alexanderi strain 56650 Contig134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6301 28 100.0 33 ............................ GGATCAGAGACCGTGCAGAGATTGGATACCATG 6240 28 100.0 33 ............................ TGTCATAGATTCGGACAAAACAATTGCTTTTAC 6179 28 100.0 33 ............................ GAATTCACCGGAGGGCCTGACGAAGATTCACAA 6118 28 100.0 33 ............................ GTATTTTTCAATGATTATCTTTATGGATTCAGG 6057 28 89.3 33 .............G....GG........ GGCGGATATAATTTGAAGATGAGTAACATTGAA 5996 28 82.1 0 .............G....GG......TG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 CTATTCTCCACATACGTGAAGTTGAACC # Left flank : TAAATTACTTAAGAGGATTATTCCAGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCGAAACGCGATCAGAAAGAAGTTATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCCTAATGAATCGAATGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACACACACGTGGGGTTGAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACACATGCGTGGGGTTGAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACACATGCGTGGGGTTGAACCGATGCTCCTGCAGGAGGGGAAGGCAATCCTTCTCTATTCTCCACACATGCGTGGGGTTGAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTATCCCCTAACATCTTGAAACACACACGTGGATTAATAACTTTAACGATTGTGCAAGTAACTTCCCCGCAAAATCCGCTAAAAGATTATCAGCTGGAAAAAATCATAACGAAACGTATCGCAAAAGAACAAACCCATAAGA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATACGTGAAGTTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 864-101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGS01000065.1 Leptospira alexanderi strain 56650 Contig065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 863 29 100.0 32 ............................. GATCATTTCTTTATTCTCTGCGAGGAGCATAT 802 29 100.0 33 ............................. GCGGTGGTGTGATGGCATTCGTAAAAGCAACGA 740 29 100.0 32 ............................. GCGGTTCTTACACGTTTTCGAGGATACACCGA 679 29 100.0 32 ............................. CAGATTCCAGATTTTGATTTTACGTCGCCCTT 618 29 96.6 33 ............................A ATAAGCTCCGATACGCACCAAAGCATCGACTGC 556 29 100.0 32 ............................. GACATCTTAACACGTTATTTCAAAGTAGCTCC 495 29 100.0 32 ............................. GGACTCCTACAGGTCACACACATCGCTTTAGA 434 29 100.0 32 ............................. TTTACTACGCACGGAATCAGGTGGGAGCCGCT 373 29 96.6 32 ............................A GGAGATTTTCCGGCGATCCGGATCCAATAGAA 312 29 100.0 32 ............................. AAAGGACATAGGGGACAGAAGCTCTAATTTCT 251 29 100.0 32 ............................. GAACTAACGTGAATACGATGCCAAACAAGCCG 190 29 100.0 32 ............................. CGTCAACTGATCAAGGATATCGAGAACTTCGA 129 29 93.1 0 ...........................TT | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCTCGTTTGCTCCAATCTATTTATGACCTTCGCTTGGTATGGTCATTTGAAGTTTTTTCACGGATGGAATCTTCCTTTAACAATTTTACTCAGCTGGGGAATCGCACTTTTCGAATATGTCTTGATGGTTCCCGCCAATCGAATCGGCTACGGAGAGGAAGGTTACAGCGCCTTTCAACTTAAAATCCTACAAGAGATCATCACTATCTCCATTTTCATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGGGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTGATCTTTAGC # Right flank : TATTTAACGTGAGTTCGGCCTAAGGAGAGAGTAAAAGTTGTAAATTGTCTTTGGATCTCAAATTCAAAGAAGGTTTTTTTGGAAAAAAAGAAAATGCAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28438-29870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGS01000093.1 Leptospira alexanderi strain 56650 Contig093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28438 29 100.0 32 ............................. TAAAATTCCTACCACAGTCGGAATGAAAATCC 28499 29 100.0 32 ............................. AACTTCTTCTCCGTGGATTTCGTCGTCACCAT 28560 29 100.0 32 ............................. GAAAGACTCCCTGATTTGATTCCAAATATCTA 28621 29 100.0 32 ............................. AATAAGTTTTTGCATTGACAAACTTATCCACT 28682 29 100.0 31 ............................. TGCAGGCTTACCAGTTACAACGATTAATTTT 28742 29 100.0 33 ............................. AGCAATTCCAATTAAAGCGATCCCAGCACTTAA 28804 29 100.0 32 ............................. TCAATGAGATGCGAAAAGGTGCTGGCGTTGAG 28865 29 100.0 32 ............................. AAGAGGCGATTAGTTGGCTATATGCAGCCTTT 28926 29 100.0 32 ............................. GGATCTCATGTTATCTATAGAAACGGATCCAT 28987 29 100.0 32 ............................. GTCGTCGTTTGCCTTAGAACAAGCCGAAATCA 29048 29 100.0 32 ............................. TTCCCCTACTTCCTCCGGGGGGTTTCTCAGTG 29109 29 100.0 32 ............................. TTAGCGGGGGGGTATTACTCTCCCCCCTCCAC 29170 29 100.0 32 ............................. GCCCACATTACACGCGCGCGTGAGCGTGCGTC 29231 29 100.0 33 ............................. ATTCAGATTGAGGTCGAAGCAAAGTTCCCGAAC 29293 29 100.0 32 ............................. ATAGCACTCCCCTCATCATGTGTTTCTAATAT 29354 29 100.0 32 ............................. TAGGTTTTACAGAGATGTTGTAATTATAGGAG 29415 29 100.0 33 ............................. CAAGACAGGGTGCAGTTCTTGGCCGTCCAGTAG 29477 29 100.0 32 ............................. ATCATGTCCGATGGAATTCGATCAGGTTTTTC 29538 29 100.0 32 ............................. GAATTTGCCAGACTGCTCGGAAAGAGCGAGAA 29599 29 100.0 32 ............................. GACAGCATCAAATTCGTCGCCGGAATTCCCTG 29660 29 96.6 32 ..............T.............. TAATTGTCCTGTTCCTGCGAATTCATATGCCT 29721 29 100.0 32 ............................. TAATTGTCCTGTTCCTGCGAATTCATATGCCT 29782 29 100.0 31 ............................. ACGCGCAGAAATATCAGGGTGCTGCCGTTCG 29842 29 86.2 0 ............TG............TG. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : ATCGTATGAAAACGGCGCATTTTATTCTATGTGCACTTTCATTTCTGCTCAATGAACCTGACTCAGAAATTGCGATCGTCACACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATCGTTGTTTTTTTACAACATTCAATTCATATAATTCCGATATACATAATATTATGATAAACAATTTCTCTCTTTCTAAACAAGTTTGTTCCCAACTCTTTCAAAATGATCGGCTCTCTTTCTTTGGATCCGAAATTCGTTTTCATGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTTATGCCCAAGCTAAGTCCAAATCGAAATCAGAAAGAACCTTAAATGATTCCGGTCTTTCAAGGTTTCTTGAAGAGGACAGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAACACAAGATCAGATCATACCTTTAAAAATAAACTCTAAGCTGACATAATATGTAAAATACTATACGAACTTTTAGA # Right flank : GAAAACAGAATGGATTTTGATTTAAAATCCTAACCACTATCCACTAAAACGTGGGAACTCACGTTAATGTATGGGTTCATTTACGCCGCCGAGCCTTTTTCTCTCGGCGGCCCAAAAATCACTTAAGCTTAGCCGTAGATTTATAGGTTTGTGAATCTTTTACCTTTTCCTCACCGATCGTCCCGGTGATTTCCACAGTCTCTTCAATCGTGATGGTCATTTTATCAATATCGTCCATATTAGCAAAAGAATACTTTGCATTGTTCGATGTGAAAGTTAGATCAATTTTCGGATATACGAAGCCATTTATCGTATAGGAATCTGTGCGCATCCTTTGAGTACTATTCGTCGTATATTTCATCTCGGTCATTGGGACATTCGGATTCAAATTCCCATCCATTACTATCTCGGCGTTTCCATCCAAAGTCACTTCTCCCTCGATCTTAACAAGAGAAGTCCCACCGCTCTGCATCGTAGGCGCCATTTGTTGACAATTTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //