Array 1 103727-103959 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000013.1 Aeribacillus pallidus strain 8m3 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 103727 30 100.0 36 .............................. ACGACTAGATGATCTAAAACCGGAATACCTAGGATT 103793 30 100.0 40 .............................. GTTTTTGGAAGGAATTTTTCAGGAACAAGATGATATAAAC 103863 30 100.0 37 .............................. CTTCCGCACGCAGCAATGATTGATACGGCTCCGGCAC 103930 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 38 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : TTAATTTCGGCTTTAGATAACAAAAATAATGTCGAGGTTCATAAGTTTAACGGACAGCATGGATTTAGTGACCCATTCTCTCCAAAATATAACGAAGAATCAGCTAAAAAAGCATTTAACCAAATGTTGGTTTTTCTTCGGAAACGTTTAGACGTATTGAACTCCTATGGAAGAGCAAATTAACTTCGTCATCTGTGGTGAAGATCCCTTCATGATTGACTAATTGGCAGGCTAGCTGGAGAAGGCAAGGTTTAGTTTCAAAACAATGACGATATTTTTTCTGGTATGAATTTTGAAACAATCGCAGTACATCACATCGCCCAAGTGTGAAAAAAGTCGTCGACCTCCAATCGTCTAAAAATCCCTGGAGATCGACGACAGCTGTTTTTTGAAGGAAACAGCAGAATAATGGGCCATTGCGAAAATTTTCCATGTTCGTTATAATTAAAACCAACATCCGCCATTATTTAGAAAACATACTAACATCAACGTTTTTTGGG # Right flank : CGCCATATCTTGAAGCTTCAGTGCTCGCTTTTTGCGGTTTTTAAGTATAAGGAATCAAAACTAATTGAGCATTAGTTCACTTGAAAGCGGAAGCAGTTGCACCCGATCTGTGAGCAATAGTTTCTCAATTATAAAGATCAACGAATAAACATATGCAGTGCCATTTATTTTTGCCTCTTGCCTCTGTTGCATCACTTTTCTACCCTATTGATCTCTCAATGAATTTAGACATTTGATTTTATAATCGTATCTTATAAAAGGGAGAAGTCTTAAGACAGCCGATATCAATTCCTGTTTGCAGACCATGCGGACGTTTTTTAACTCAATTGCAAATTCCTTGTAAACACCCTTGCCTTTCATTCATTCACAAATAAAAACAGCTTTCCTAAATACATGATCCCTCCAAATTTGAAATACCTTTACTTCACGAAAATCAATCATATTCTTTAGCAGACAATAAATTTGGCGAACGATGAATGGATAAGAGAAAAAGTTATTCA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 31037-34728 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000018.1 Aeribacillus pallidus strain 8m3 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================== ================== 31037 29 100.0 39 ............................. TTACGTCACCGACTTCAAGTATGGTAAGGGTGTTCCAGT 31105 29 100.0 37 ............................. TCAGATGGTACATATAAAATTTTTGTTTCCATGAGCC 31171 29 100.0 35 ............................. TCCGTTTCAATACGAAAATGCAACTCCAAATCAAA 31235 29 100.0 39 ............................. AAATAACACCGTCTTTGTTTACTTTCAAGTCGATTTCGT 31303 29 100.0 35 ............................. ATTCTTGACCCAACTGAGATTTACAGCGGTATGTA 31367 29 100.0 37 ............................. GTTGATACTGACGCGAACAGGTATACCTACGTGGCCG 31433 29 100.0 39 ............................. TTTTAGACATGGGTTATTCCTTCAAATATGCGGCACCGA 31501 29 100.0 38 ............................. TGTCAGCTACAGAACTTAATAATTATGTGAATCTGTGG 31568 29 100.0 39 ............................. TAGTCTTTTCTGTTCATCCGTGAGCCCATAGTAAAGATT 31636 29 100.0 35 ............................. ATAACTGTAAGAATTGCACCGACAGCAATTAAACT 31700 29 100.0 35 ............................. CAAACATGAGGAAGCAAAACCCCGTTTGCGGGTGA 31764 29 100.0 35 ............................. ATTTATATAAATATATAAAGGCGCATAGGTAGAAA 31828 29 100.0 35 ............................. TTCGAATCACGGTATTTCCGTGTGTTCTCGATCAC 31892 29 100.0 36 ............................. AACAAATGCTTTGAAGGGATATCAAAACGCTATTTC 31957 29 100.0 35 ............................. CTTGAATTACGGATTGAATCATCTGACGTAATACT 32021 29 100.0 37 ............................. ACAAATTGCTGCAACTATGTAACGGTGCTGTTTACGA 32087 29 100.0 36 ............................. AGGTCTGGGGGTACTAACCAAGCGAATAACATTGAC 32152 29 100.0 37 ............................. AACAATCGTCGGCGACAAGATGAGAGATGCTAAAAAC 32218 29 100.0 36 ............................. AAAATCATATGGTTTTCCTGGTTATGTGAATGGGAT 32283 29 100.0 35 ............................. ATTTTTCAACCGATTCAACCAGACAATAAGCAAAT 32347 29 100.0 39 ............................. CCACTCAAATCGCGATATTCCCGCGTGTTCTCGATCACA 32415 29 100.0 37 ............................. GTTTATATTCGGCAAGTGAGGCTGTCGGAAAACTTGA 32481 29 100.0 37 ............................. CAAAAAACTCCAGAACAAATTGAAATTGAGAATCTGA 32547 29 100.0 37 ............................. AACCCTTATATGACGAGTTCAACTTTTTGGTCGACAG 32613 29 100.0 35 ............................. TATACTGATTAAGTTCTTCCTTGAAAGCGTTTGGC 32677 29 100.0 37 ............................. TGACTTTTCTTCAACATCTAAGAACCAGAAAGTAGGA 32743 29 100.0 35 ............................. GGCCATATTGATGCTGGCAACGCATCAGAAAGGGG 32807 29 100.0 35 ............................. TAAAATATCGTACGCACGGCTGTTTGTGGGTTGAT 32871 29 100.0 38 ............................. TCGCCATCGATAACACCAGCCGGCGTGTTGTATCCTTC 32938 29 100.0 35 ............................. GTAGAATCGGCGTTCCGGTTCCGGGCGCGCTCAAA 33002 29 100.0 37 ............................. AACCCTTATATGACGAGTTCAACTTTTTGGTCGACAG 33068 29 100.0 39 ............................. TACGTCGATTCGGCGGGGGAATATTTAGGGCGGCTAAAA 33136 29 100.0 37 ............................. TAGTAGTTCTTAGTATTAAACCTTCTACACCATATAC 33202 29 100.0 37 ............................. TTGTTAGATATCCAATTGCTGATGGAGAGTAGACTAG 33268 29 100.0 36 ............................. TTGAGATTGAATGATCGAAATACCTGTTTCTATACC 33333 29 100.0 36 ............................. GGACAAAAGGCAGTTTTGGATGCAATCAAACAAAAG 33398 29 100.0 37 ............................. TTGGAAACGCTATGGAAGGCGTTAGAAAGGCAGTACA 33464 29 100.0 38 ............................. TGGGAAACAATTATTCTTTCCACAACTGACATTACTGA 33531 29 100.0 36 ............................. ATGAAATCAAGAATATAACAGCCTTACGGAAGAACC 33596 29 100.0 36 ............................. AAACATTTTATCATTCTCACGAAGAAATTCAACATT 33661 29 100.0 36 ............................. TTGGGATTCTAATGCGAAAGCAGGTAGAGCATCAAG 33726 29 100.0 36 ............................. TTATATTAACTCACCAGGCGGCAGCGTCTTCGAAGG 33791 29 100.0 35 ............................. AGAACGTTTCTTGTAGGGGAGGTGAGTGTTTTTGA 33855 29 100.0 37 ............................. GATCAAGTCTTTGCCGAATTCAACCTCACGTCCACGC 33921 29 100.0 38 ............................. AACGTTTTGAAGCGTTGGAACGGAAGCGCATGGGTAAA 33988 29 100.0 36 ............................. GGTTGATCGGCTTTTGAGGTTGCCGTGAAAACCCAG 34053 29 100.0 35 ............................. AACATCTAGCAAAGAGAAATCGTATCATCATTCCC 34117 29 100.0 37 ............................. TTTTTGCGGGCAGGAAAAGCAATTGTTTCCCTGCCAC 34183 29 100.0 35 ............................. AATGAGTCAGCAAATTAAAAAGCGCAGGACATTTC 34247 29 96.6 36 .................T........... AAAGATCTCTGCGATCGGTTCGAAAATGCAAAAATC 34312 29 96.6 36 .................T........... TCTGTCGAAATGAGTAGGCGGAGGGAGGTGAAAAAA 34377 29 96.6 35 .................T........... AACGGTACAGGAATGATTTTACCCGCGTTCTTCGA 34441 29 96.6 35 .................T........... CGAAAACGCCGGTAGAATCGGTGTTCCGGTTCCGG 34505 29 93.1 38 .................T..........G ATTAATCTTCTAAGAAAAGAAATGTCTGATCAGTGTGA 34572 29 93.1 98 .................T..........G TTTTTTCCGTTAGAACCGAAATAAAAAGTAGATTTGTTTTATCACTAAGTTGGATATAAATAAGGGGAACTTGAACGTATTCGGACAGGCTGGAAATG 34699 29 82.8 0 ...G....AA.......T..........C | C [34724] ========== ====== ====== ====== ============================= ================================================================================================== ================== 56 29 99.2 38 GTTTTATCTGAACTAAGCGGGATATAAAT # Left flank : GATTACGAGAATAATGTTGTTATAATAGATTGTATTGATTGACATAGGGTACTAGTGTTTCCAATCTTTTTTTGGGAAGGTTAGTATACATTCATTATTTTAATGAACTCAATTCATGATGATGCATGAAATGGGCTGCTGACGGCTAGTATGTATTTGTAATTTTAATGAAAAAGACTTAAATGAGACTTGTTTTCGTAGGGATATGGATCAAGATTGGAAGAGTAGCAAGGATAGACAAATATTCTTAGCCTAAGGAATGTTGTTTTTGTCAACAAGTATCAACATTATCTCAATGTTGAAGGCAAAAATCAATATTTGCAGCAAACCTATTATATGAAAAAGTGATGAAACCTTCGATGAATTCTAGGTTTCAAAGCTTTTTTTCATAGATCCCAAAACACGATTTAACCTTTACTGCAAACTGCACAAATACTTGATCTCGCAAGTTTATAAAAAAGCTTGATACTATCGTTATTTTGGCATTTTTGTTTGGTGGG # Right flank : CCGCTAAGGCTAATTTAAGCGTTAATCATTTCATAAGCAGGCAACACGAATATAACGGAAAAGCTGGAGAAGAACAGTGCCTGCTTTCTTAAATTTTGTTTTATACTAGCTTGTCTCAATGATGGTTTCCATCTTCAAAGGACGGGTCAGTGCTTACTCTTTCTCATAAATCATTTGTACAAATGTGTGATTCTTTTTAATGAAAATATTTTTGTAAAGGTTTAAAATGAAACATATACTAGTGCTTTTGTCATAATGCAAGAGAAATTAGCATTGCATGAATCAGAGGCTGGTTTAGGGGGAGTTTCCAATGGCTTGTAAAAGCGGTGAGACGATAATGAATATAAGCTTCTAAAGGTAAAATATTTTATCTATTTGGTTAGCATTCGGCTTGCTTCTTATTCGTGATGCCATTCGGAAAGATTTTATATTGCATTTTTCCCGAAATGGTTGTTTTTATATTTTAGTCGGTGCTAAAAATAGAAAGATTTTTGGTTATG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGCGGGATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 50953-50526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000010.1 Aeribacillus pallidus strain 8m3 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50952 30 100.0 37 .............................. ACACTTTCTTTGCATCCGTTGATTCAAGCAAATGACC 50885 30 100.0 34 .............................. AATTGATATACCTGATCAATTTGTTGATATACCG 50821 30 100.0 38 .............................. TATGTGTAGCCATATAGACCGCTATTTTTTAAAACAAT 50753 30 100.0 37 .............................. CGCCGATCGGCTTCCGTCAATTTCATTGCGAAAATCC 50686 30 96.7 36 .....................G........ GCGATCCCTTTCATTCCAGTGCTGCTGTTCAATTTT 50620 30 96.7 36 .........................A.... TGTATCAGACCGCAAGAAAAGCTGAAGCAACCATTC 50554 29 80.0 0 ..........A.C.C..A..-.T....... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 96.2 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ACTTGCTTACCGCTATCCGATTAAAGAGATGTGTCCAAGTCCTGAATTTTTAAAAATTTTATCTCAATACGAAGTACCTATAACTATGTCTTCTGATGCTCATTTTCCAGATGATGTAGGCAATTTATTAGATGAAGCGAGAGAATTGTTAAAATCAATCGGTATTAAGAAAATAGCAACATTTGAGAAAAGGAAAAGAATTGAAATTGATTTAGACAAGTAGTACGGGAAAACTTATGATATTATAAACTGCTTTCAACTATGTACGAAAGAGATGGAAACTTGCAATTATAACGGAACCTCTTAAAAATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACACTTTCTTTTTTAGAGTAACGATGCAAAATCTGCAGAAAATAAACGAAAAACAAAGAATTGATAAAAATTCCTGTTTACGTTAAAATGAAAATAACAAAATTTCCAGTATTATCAAAACTTTGTCATATCAACAATTTTTTGGG # Right flank : AATAATCTCGATATCACACGATAAAAGAGTAAGAAAAGCTCATAGACAAATAGATGGAAAGTTTTTTGTACAGTAAATAATCCACCTGCAGGACGGCTTCCTGGTAATCCGTATGGGTTGTAGGTACGTTACGATACCCAGCATTTGATGATGAAGAATTAAGCGAAAAGGTTGAATGTAAACCGTTTAATAGCATTGTTGAAGTGAAAGAATTTTTCCAAATCAGTTTATTAGGGCGAAGAAGAAATATTTTTGGATAAAGAAGAGACTTTTAAAATAAAGCAGATTATAGTGATCACAATTTTTTATGTGAGATGGTCAAGAAAATGAAAGAGGATAGTAAAGAACCTATTGTTACTAATAAAAATAAACCTGTTGATGATCAAAAAGAAAAACAAAATGAAGATACAAGATCTGATCGTTTTTCATGGAAGATAGATGATGTTGAATTCTATTAATTTTTCAAAAATTGGCGCTCCTTTTAGGAGTGCTTTTTATTT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 70250-69766 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000010.1 Aeribacillus pallidus strain 8m3 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================== ================== 70249 30 100.0 36 .............................. CGCGGTGTGTCCGGGAACGCTTCGTAACCATATCCG 70183 30 100.0 37 .............................. TTTGGACTTTGCGTACTTTGTAATGGTTTGTATCATG 70116 30 100.0 34 .............................. TTTCCCGTGAGCCGCTCGAAATGTTTTTCGATAA 70052 30 100.0 38 .............................. ACTCTTGCAGACCTTTTGACATTTTCAATAATTCATTG 69984 30 96.7 159 ................C............. ATTTTACATTGACAGTGTTTTCTGACTCCAGCGCAACATGTTGATTCTTATGGATTTTAATGACCAAGATGATGATGGAATTTTGCTTGACATCCTGTAGGAAAGTACTAATAGTCGAAAAATGGGAGTACAATATCACTTGGCTTTAGACGCATCAAG 69795 30 66.7 0 ...A.AT.T..T...G.AC...T.A..... | ========== ====== ====== ====== ============================== =============================================================================================================================================================== ================== 6 30 93.9 61 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GGTGGATGGTACCCAGAAGACACAGTTTTTTCATCCATATGATGAAGCATTTCCACATTTAGTGGAACTTAATTTTCGCAATAAGTATGAAGCCTATTACGGAGATCCGCCACAAGAGAGATTGTTTATTGAACCTTTACATGTTACTAAGAGACATAAAGTCGTCACGACTTTTAAAAATTACTATATCACTGCATGGCAGGGAAGGTATCGTTTGCGGTCTTCTCCGAAGTATCTTACTTTCCTTTTGCAAACTGGAATAGGCGGACGAAATTCTCAAGGGTTCGGAATGTTCCGTGTTATTCGAGAATTGTAGTAACAGGGAAATATTTGTCGTCGACCCCCAATCGTGCAAAAATCCCTGGGGATCGACGACTCTTTTAAATCTTTATTGAGCCCACCTAAATCAAAGGATTGATAAAACTTACCTCCTTCGTTAAAATAAAAATAACCAATCAACCATTTAAAACCAAATACTTATGTAGCAACAATTTTTTGGG # Right flank : TTACGGTATACGGGGTCTTCCCTCATTACATTCACGTAGTGGGGGACAGGCCCCATAATCATTTCATCATAAATAAGTCTCAAGACTTAGTTGAATATACATTTGAGGTCCATTTTGGAAAATCACTTTTCTCTGTATTCTAAGGAAGAGAAAAGTAATTGAATTTGTTTTTCTTTTAAATTCATTTAATCAATCCAACTTGAAGTTTTTGGATAATAGCTGTTTATGAGGCTAAAAATCTTCTCTAAAATAAGAACGCGAAAAGGCTGTGGATTTGGAGAGGCATTGCTTTTTTTGTATTTGTTTAGGCGAACTTCTTGCACTAGAGATTTGTCAATAAAGCAAGTACGTTTTATTGACATGTTAGTATGAAAATTCGCAATATGTGGAAGAAGACTATGTAAGATTCTAGTCAAAATATTTTGTATACAAGGGGAGGATCGGTGCTACTTTGTTGCTCCTTGCTGAGCGGAGTGCTAAAGGATAAACAAATCAAGTGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-2.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 27063-26703 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000027.1 Aeribacillus pallidus strain 8m3 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27062 30 100.0 37 .............................. AGATAATTAACAGCATGGCTGATGATATGGATTTTGT 26995 30 100.0 36 .............................. TCGCTAAACAGATTCCCGGTTTTTTCCTCTACATTC 26929 30 100.0 37 .............................. GCCAAACGGCGATCTTTTATGAACTTCGGTGCGTTTG 26862 30 100.0 35 .............................. ATGCTTCCACAATATCGTAATGAGCCTGTTCTTCA 26797 30 96.7 36 .................G............ TCCGAATGACAATGCAATTGAACACTTACGCACCTT 26731 29 90.0 0 .................G.......-..G. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : CTGTTTCATTATAAGAGAAAATATGAAACTTTTGGTAAACAGAAAGAAAAAAAGGAAATTTTAAGTAAAAACTACCAATCATTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTTCCTGAATGAAATATTAAATATGGTCTCACTCTTCCTTCAATTGAATGAGAAGGATAAACCTAGAATATAAAATGAGCCGGATGTTTACTTTATTAAAACAGATGGGTCAGGTAAAATGGTTGATACAACATGGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACTCTTTTAAATCTTCATTGAGCCCAAGCAAATCAAAGGTTTGATAAAAATTCCCCTTTTCGTTAAAATAAAAATAACCAGTCAAGCATTAAAAATGAAATGCTTATTTAACAACGTTTTTTGGG # Right flank : CCCTGTATCTAAGAAAATATGCTAGTCTACTAATAAGTGAAGCTATGAAAGAGCGCTAGACGAATACCAAAGGAGCGCATGAAATGACGTGTAAAGAACCTAAATTTACAAAAAGTCCTTTCTTCGTTGATGAACCGGGTAACTGGCACCTAAAGCCTGGAGCGCCGGAAGACATAGTAAAAGAGTTTAATGAATATATGGAAGCCCAAAAAATGTGTGTAGAAGCTCCGAAGTTAGACGAAGCAGAGTTAGAAAAAATCCTTTCAGATCAGAGCTAAAAAAACTTTGAACGACTCTTTTTTCTACTGGCTGCTTCCCGTACAAGTATCAATAGGGTCTTGGGGCAGTTGTGATGGAAAACGCGCAGAATTTCACATTCAGCGCTGTAAAGCAGCTGGTTTAATCTTAACGAAGCTTTGGCATTGTCAGGGAAACACATCATTTAAATCGGTGTGTATTCTTTCACAATACATTAACAAATCCTTCGGGTAAGAAATGTT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9010-8444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000025.1 Aeribacillus pallidus strain 8m3 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9009 30 100.0 38 .............................. TTTGTTCACGTACTTTGGTGTGCTTTTCTCCCGTCCAG 8941 30 100.0 38 .............................. TGAAAGAATTCAAAAATTTTAAAGAAGGATTGATAGAA 8873 30 100.0 38 .............................. GCCTTACGGTGTCCAACAAGATATTCGGCGCATTTACG 8805 30 100.0 35 .............................. ATATTTGAAACTGGATTAAGAATGTCATTAATATT 8740 30 100.0 36 .............................. GAGAAAGAACCCCGAATAATTCTTCTGGTGTACTGA 8674 30 100.0 35 .............................. GACACAACATAAATTGTATCCGGCTGCGGATCTGG 8609 30 100.0 36 .............................. TTGTAGCTCTTTTGTTCTTCCAATTCTCTCTGCAAT 8543 30 96.7 37 .................A............ TAAACTCTAAACATTCAAGATATCCTTTGTGATAAGC 8476 30 93.3 0 .........................TT... | AAA [8451] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ACATGTGGAACAGCTTTTGTTTCATTATAAGAGAAAATATGAAACTTTTTGCAAACAGGAAGAAAAAAAGGGAATTTTAAGTAAAAACTACCAATCATTTTTCAGATTATGTTCTTATTTTAGATCGTAGGAACCGATCGAATGGACCTAAACCAATTTTTCCAGAATGAAATGTTAAATATGGTCTCACCCTTCCTTCAATTGAATGAGAAGGGAATGAGCCGGATGTTTACTTTATTAAAACAGATGGGTCAGGTAAAATGGTTGATAAAACACGGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACTCTTTTAAATCTCCAATGAGCCCACGCAAATCAAAGGATTGATAAATTTTTACTCATTGGCTAAAATGAAATTAACCAATCAACCATTTAAATCGGAATGCTGATCTAACAACATTTTTTTGG # Right flank : CAAAAAAGCACGGCCTATGCGGTCGTGCTTCATCATTTTTATAATCGGGGAAACGGATATAAGTTAAGTTCGGAACATCAATGAGCCAGCCGATGTTTTTTGTGAAAGTGATGTCGGAGCGGGGGGGCATGGAACATCAAAATAAACGAGAGAATATTTTATGGTTCTCGTCAGATTAGGCAGTGCTTATTTCATAAGGTCAACTGCTTCGAAATAGTTGAATTTATTTGAGCTTCTTCAAATTTCAAAAGCAAACTCATTCTCTGGTCAATCGCAATTCTTTTTTGGCTTCTTTGTCGACTACAATTTTCTCATGAATATATCCGAATTTGCCTTTTGAAGCTCCACAGACAGGACAATTTTGAAGTGAAAGAGGTAATTCCAAGCCACAGCTATTCAGCAGATCTTCATTGGATAAAATGTCCACTGCGGTTCCATCTGCAGCTATTTCTCCTTTTTTTATCACAATAATCCTTTTACAGGTTTCAAGTACCATGTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 17812-17579 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000025.1 Aeribacillus pallidus strain 8m3 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17811 30 100.0 38 .............................. ACGTTAATGCATCCACAATGGCTTTTAAATGCATTCTT 17743 30 100.0 38 .............................. CATATTGTGCCAAATCGATAAATTGACGACGGATTTCA 17675 30 100.0 37 .............................. TTTTCAAAGTCGATGTCATCCCATGTCAACGCCAACG 17608 30 96.7 0 ................C............. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 38 GTTTTTATCTTAACTATGAGGAATTGAAGC # Left flank : AGCTCTGCCTTTGTGCGGAGAAAAAGGGGTTGGTTTGCTTATTTTTAAGGGAACCTATAATAGATATAGATAATGTAAAAAATAAAGGGTGAATCTGCCAACTTTTTTCTTAAATCGAATTCGATAAGGAATGTTTCCTCGTATTTTTATCCCATCGCCATGCGTTTGACCTTTTTCTGTCATTTCATGAAGGATGGACAGGTTTCGGTAAGTATGCCATTCTTTATTTGGAGGCCGGAATTGTAATTAAGTAAGAGGTGTTAAATCAAGTTCCAAATGATAGAATTGTTGATCGGTACACGTGGAACACCTGTTTTAAACATAATAAAATTTGTCGTAGATCTCCAATCGTGCAAAAATCTCAGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCCATGCAAATCAAAGGATTGATAAAATGTACCTCCTTCGCTAAAATGAAAATAACTAATCAACCACTTTAAACCAAATACATATCTAACAACCATTTTTGGG # Right flank : CCTGTTGTGGATGGCGCAATTTCCGCCCAAAATATGCTTTTATTTTAAACTATGAAGAAAAACTTTAAACAAAAAAGCACGGCCAATGTGAAGTGAGCCATGTCAAGTAGACAGGAACATTTTATCCATCTTTCAGAATTGAAGTATTTTCATGATATACAAGCTATACTTTTTCAAGAAAAAGAAATCACATATCTATTTTTATAGCGATCATTTCTACAATCCAGCAGGAAATTATGCACAGACTTGTGAAAGATAATGGCCAATCTTATAAAAAATGTATTCAAAAGTGATAGCTTCAAAACTATGAAATTCGTAAGTAAAAGAAAGCGAAAGAATGGAACACCATAAAAGACGAGGAAGCTCGTCCGGATCGTACCAATCGGGAAGAAAGAAGTTAAACTGCAGCCAATCGAATGCTAGACGAAAAAAACTGTAGAGCGCATATGAATCCATATTCAAAAATCCTTCAACGCTTAAATGTTTCATTTCCGACGAAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11708-11477 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000041.1 Aeribacillus pallidus strain 8m3 NODE_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11707 30 100.0 38 .............................. GATGGTATATAACCAATCCTTTCCCTAATGATATTTTC 11639 30 100.0 36 .............................. ACAAAAGAGGAAAAAGAGATTCGATTGCAAACTGAA 11573 30 100.0 37 .............................. CAGCTGAATTTGGTGAGATTGTGACTGCCGGAGTAAC 11506 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GTTTTTATCTTAACTATGAGGAATTGAAGC # Left flank : CATGTGGAATAGCTTTCTGTTTCATTATAAGAGAAAATACGAAACTTTTGGTAAACAGAAAGAAAAAAAGGGAATTTTAAGTAAAAACTACCAATCATTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTTCCAGAATGAAACGTTAAAATATGGTCTCACTCTTCCTTCAATTGAATGAGAAGGGAATGAGCCCGGATGTTTACTTTATTAAACAGATGGATCAGGTAAAATGGTTGATACAACATAGATTTCATTGTCGGCAGGAAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGAATCGACGACTCTTTCAACTCTTTATTGAGCGCAAGCAAATCAAAGGTTTGATAAAAATTCCACTTTTCGTTAAAATAAAAATAACCAGTCAAGTATAAAAATGAAATGCTTATTTAACAACATTTTTTGGG # Right flank : CTTTCATGAATAATTAATAGAAGAAGTATTCGTTCCACTTTTGAAATGAGGGATTTAAACGTTAGTTACATTTAGATCCTTAAGTCTCAACATTCTTTTGCAATACTTATTTTCAAATGTCGATTCTATACCGTGAGAAACACCACAGGAAAAAGACCAACAAAGTTTGAGATCTCATCGGTAAAGGGATTATAGAGATTTTAGGCAGAAGAAAAAGAAAGTCTGACGGAAAAGCCTCGGAAAAATCTTCGGATTGCTTACTTATACTCGATATTTGCATCTTTGATCAATCTTTTATATGTTCCACTATTCAAAATCCTTCTTTGAAGTTATCACCCTATAAATCAACATTTCACGTTGTTTCTCTGACATTTCATTTAAGCACGCTTCTCGTTAGAGAATCCATGTCAAGCCCTTGATGGATAGATCACATACATATATGTATATTTATTCAAAATTTTGATAAAGATATACTGCAACACTCTGTATTTTTTTCTTGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 96170-96531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000007.1 Aeribacillus pallidus strain 8m3 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 96170 30 100.0 35 .............................. AAAATCGTTCAGGAGTTTTTTATTTACCATTGCCC 96235 30 100.0 35 .............................. TCTACAGCAGTAATAATGACTTTGACCATCATCTT 96300 30 100.0 40 .............................. ATATTGGATTGAGTAAATTTTTCTTTCAGTCCTTCTCTGG 96370 30 100.0 37 .............................. CAATAAAGTCTGCAAAACAAGCGTAACCGAAGTCTTC 96437 30 100.0 35 .............................. GATAGAGTAAAATCACGCATTGCTTTTTCAACAAT 96502 30 83.3 0 ......................G..TTC.T | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 97.2 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : AGAATCCATGGAACACTTGGGTATTTAAGCCTGCTGGAGTACAAAGAGAAACACCTCAAACAGAAAAAAGGAATTTTAAGTAAAAACTACCAATCATTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTCCTGAATGAAACGTTAAAAATATGGTCTCACTCTTCCTTCAATTGAATGAGAAGGGAATGAGCCGGATGTTTACTTTATTAAAACAGATGGGTCAGGTAAAATGGTTGATACAACATGGATTTCATTGTCGGCAGGCAAACTTAGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCCAAGCAAATCAAAGATTTGATAAAAATTCCCCTTTTCGCTAAAATAAAAATAACCAGTCAAGCATTAAAAATGAAATGCTTATTTAACAACTTTTTTTAGG # Right flank : TCTTAAATTATGAAGAAAAGCTTTAAACAAAAAGCACGGCCTTTTGATATGATCCCCTTATAGTGGACAGAAAAAAGAAAGCCCATTAATCTGTCTACTATGGAGGAGATTTTTCTATGATATGATGGAAAGTTTAAAAAGAAAGCTGTGGATTTATATTTGAAAGAGGGTATGGGATACAAAGCGGTGGCAAAAGAATTGGGAATAAGTCATTCCATGGTACGTCTTGGCTGAAACTTTTACATAACTGAACCGGATTATTCTAATCGATTTACATAAGCATTTGATCATTCTTCAGTATTTTTGGTTGAGGTTGTCTTCCTGGATCATAAATATGGGGTTGCATTTTTTTGCTTTATCACATATAGTAAGTAGTAAGTGATAAGTAGTAAGTAGAAAGTAGGGAAATCGAAAATACATTTTTAAGGAGGTAAGTCAATTGTTAAAAGATTTAACTATTCCTCAAGAATTTGTATTATTAGCTTTAGACCGTGAAACAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9207-8318 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000043.1 Aeribacillus pallidus strain 8m3 NODE_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9206 30 96.7 36 ................T............. TGTATCTGTCGACGTAGAAAACTACTTGGTAACCGT 9140 30 96.7 37 ................T............. TCGTTTAATAAGCGGTTAATCTCTTTCAACAAAATTC 9073 30 96.7 35 ................T............. CCAGATGTTATCTTAACAATGCGATCTTCAATGAC 9008 30 96.7 36 ................T............. CTTTTCGGTCAGTAACAATTTGAATAGGTGGCAATC 8942 30 100.0 36 .............................. TCGGTCTTGGCCCGGAACGTGAAGATGGTACTCGCC 8876 30 100.0 36 .............................. ACGCTTGATCGTGCCGTCAGTATCCGCAAAATCCGC 8810 30 100.0 36 .............................. ATAACGTTATATAGTCTAGTCTGCTAGAACATGAAA 8744 30 100.0 37 .............................. CCGATAAGGACGAGCGCAAAACGAAAGAGGAAATCGC 8677 30 100.0 38 .............................. TAGAAACATACAAGATATATCTTGTATGTTGTATATAT 8609 30 100.0 36 .............................. ACTAAATTCATAACTTCTTTAGATACTTCTAAACGT 8543 30 100.0 37 .............................. ACTAAAATCAATCAAGACATTAGCAAGTATGAAAATC 8476 30 100.0 35 .............................. AAGAAGATGATGAATAATGGATCCACTCAAACAGC 8411 30 100.0 34 .............................. CCGCGACCGACCGGTTTGTGTTCGATCGTCACCA 8347 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.8 36 GTTTTTATCTTAACTAAGAGGAATTGAAAC # Left flank : TAACGCTGCCGGCTATGTATGCGCCGGAGCGGACGAGTTGACCCAAAAAATGCTTGAGAAATATATTGTTCATATAATTTTTGGATTTCACAATCAATTCTTGTATAAATTTACATCTGGTGTATAATCAATTTGAGATTCAAAACAATCACCATATTACAAAATCAATAGATCAAAATGTTCCAAAGAAAGAAGAGATCGAGAAAAAGCTGGTGGAATATTGTCTAAGATACAGAAGCAGCAGTAAAAAGCATTCTGGAAAAAACACGGATTTAAACAAACTGGAATTGTCGATCTGCAAACAAACGTTATGTTTTAAAAATAATGAAATTTGTCGTCGACCTCCAATCGTGCAAAAAACCTGGGGGATCGACGACTCTTTCAAATCTCCATTGAGCCCGCACAAATTAAAGGATTGATAAAATATAACTCCTTCGTTAAAATGAAAATAACCAATCAACCATTTAAAACGAAATGCTTATTTAACAACATTTTCTGGG # Right flank : ATCCTTTGGAGATTTTTGCTACCAAAACATGGGATAGATGACATATTATTTTGCTTCGAACATGATTTGATTGTAGTGTGAACAATTTTGCTGAGGTAGTCAAAGTCTGTCAAAAAAGCGTCTATCCGAATGGATGGGCGTTTATTTATTTGCTGAAAGGTAAGATATCTACCGACTTATTTGAAATTAAAATAATTGTTTAAATGAGAATTTCCTTTAACTCAAAAATAGGATAAATTAATTTGAAGGGCTTAAATTAGAAAATTTGTTCCCTTTTCATTTCAACACATGCATTCCAACTTAGGCATGTGTTTTTTTATTTCAAAAAAATTTGATAATATAAATAAAGGAAATTTTGGAATTGTGGTGGGAAAGATGCTAGAAAAACTTTTAGTTGAACTCGCTAAACAGATAGATTGTATTTACACATTAAGCTCCAACAACCCAAATTGGATAACAAAAGTTGATTCAAATGGGTTTTATGTGGAAACAGAAAAATC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTAAGAGGAATTGAAAC # Alternate repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 90505-90804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWBR01000009.1 Aeribacillus pallidus strain 8m3 NODE_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 90505 30 100.0 34 .............................. ACAAGAACACCATCTTCATTCCTAAATAGCTTGA 90569 30 100.0 39 .............................. AATGAGTTAGGGGTTAAACCTCGAATTGCTAAAGAATGG 90638 30 93.3 38 ...C.............G............ TCAAGTATCTGGAGCATCTGATCGGCGCTTATGCCCGC 90706 30 93.3 39 .................G..........G. AATAACTTTCGCAGGAATCGGCAGAACTCCATAAACATA 90775 30 86.7 0 ....................A.C..A..T. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.7 38 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : TGTTTCATTATAAGAGAAAATATGAAACTTTTGGTAAACAGAAAGAAAAAAAGGGAATTTTAAGTAAAAACTACCAATCATTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTTCCTGAATGAAACGTTAAAAATATGGTCTCACTCTTGCTTCAAATGAATGAGAAGGATAAACCTAGAATATAAAATGAGCCGGATGTTTACTTTATTAAAACAGATGGATCAGGTAAAATGGTTGATACAACATAGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACTCTTTTAAATCATCATTGAGCCCAAGCAAATCAAAGATTTGATAAAAATTCCCCTTTTCGTTAAAATAAAAATAACCAGTCAAGTATAAAAATGAAATGCTTATTTAACAACATTTTTTGAG # Right flank : CTCATTCATTCGGACTGGTTCAGAACACGCAGGGCAACGTTTTTCATAACTTATTTACTACCCTTTCTCCTTGACAGATGTCTGTAGGAGAAAGGGTTATTTTATTGGCGAACATGATGTAGAAGATTCCTTTTTTTCTCGTTTTGGATTAAATGGACTTGTCATATGATCGTTTTTGACTGATTTTTGTCATAAAACGACCATTTTTGAATGTTTTTGATAAAAAATGATAGATTTTCGAAAGTGCTTACACTATAATGAAATTAGAGAAAGAGAAAACATCCAGATGGGAGTTGATAAGGCTGCTAACACCAGAGAGACACCGGATCATTTTAGAGCTGTTGGAACAAAAGGGAGTCGTCAAAATTCAAGAATTGGTGGAGGCAACCTCTTCGTCAGAATCTACGATTCGAAGAGATTTAAGCCAATTAGAAAAAGAAAAAAAGTTAAAGAGAGTTCATGGCGGAGCTTCCTTATTTCAACAAAGAAGTGAAGAGCTG # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //