Array 1 342-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBIO01000021.1 Cutibacterium avidum strain CI878 CI878_rep_c32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 341 29 100.0 32 ............................. CGGGGTGCCCCCGGACCGCAGGGGCCGCCCGG 280 29 100.0 32 ............................. ATTTTGCCGCCTGCTCATACGAAGGCGGCAGG 219 29 96.6 32 ............................T TCGTTGAGGACGTTTTCGTTTCACTCGACGCA 158 29 100.0 32 ............................. GGCATTGGCGACTTCCCGATGTGGAAGTTCAC 97 29 96.6 32 ............................T TTGCAGTCAAACTATTGGCTGCACCATCACGA 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GACAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20040-21594 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBIO01000005.1 Cutibacterium avidum strain CI878 CI878_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20040 29 100.0 32 ............................. CGGGGTGCCCCCGGACCGCAGGGGCCGCCCGG 20101 29 100.0 32 ............................. ATTTTGCCGCCTGCTCATACGAAGGCGGCAGG 20162 29 96.6 32 ............................T TCGTTGAGGACGTTTTCGTTTCACTCGACGCA 20223 29 100.0 32 ............................. GGCATTGGCGACTTCCCGATGTGGAAGTTCAC 20284 29 96.6 32 ............................T TTGCAGTCAAACTATTGGCTGCACCATCACGA 20345 29 100.0 32 ............................. ACAAGACCGCGACGTCCATTGAGGCTGGCGGT 20406 29 100.0 32 ............................. TCGGTCAACTATGATCTTTTGATGATGTCCAA 20467 29 100.0 32 ............................. GCGCTTCCTGCCAGAAGCTAGACGCCGCACCG 20528 29 96.6 32 ............................T GCGGACGCCAGATCCATTCCCACAGGCGCAGT 20589 29 100.0 32 ............................. TGGGAGATGCGGATGAGCATGTCCGACGTCAT 20650 29 96.6 32 ............................T TTCAGTGGTCATGTCGAATGTGTCATTACCCA 20711 29 96.6 32 ............................A CCACCCACCCAAACAGAGTTATCGACCCCGAG 20772 29 96.6 32 ............................T CACACGTCGGCTCACCATACGGCATATCACAA 20833 29 100.0 32 ............................. ATCTGGAACAGTCGGTGTGGGGTACGGAGTTG 20894 29 96.6 32 ............................T AGTGCGATCAATAGAGGCAAGTTTCCCCGAAA 20955 29 96.6 32 ............................T CGGCTCGCCCTCCACAGGAATAGCCTTGGATT 21016 29 96.6 32 ............................T ATTAGGGGCACTAAATACGATCCTACACGTGG 21077 29 96.6 32 ............................T CCCAGGGCGTGAACCTCCGCAGTTTTGCACGG 21138 29 96.6 33 ............................A TGCCCCTCAGACGCTCTCCCTGCTGCCTAGGAG 21200 29 96.6 32 ............................T GAACCGCGACGACGTTCTGGAGATCATCCGCG 21261 29 100.0 32 ............................. CTACACAAGTGGTTTACCCCTGCGTCCGGCTC 21322 29 100.0 32 ............................. ACGCTTGGGCTGTCATCCCCTCCGCCGCGTCC 21383 29 100.0 32 ............................. GGCGTTTGCCAGATAATGTTGAACGTGTTTCA 21444 29 100.0 32 ............................. ATAGATCGATGCCTATGTAGCGGTGCATCGAT 21505 29 100.0 32 ............................. AGGCGGTTGCGTCCGGTGGAGATGCTCTTGTC 21566 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GGAGGTCAGCATGGCTGACCTTGTGATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCACGCTCCGCAAAGAAAGCCGCCCCCGAGGGACAACTCGGAGGCGGCGAGGCGGCAAACGCCGATAACACAAAAGGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCGTCTTCCCCGCCTACGCGGGGGTAAGCCGGGGTTTCTCACTCAGATGAGGAGGGCGAGATGAGTGAGTTTGTTGCCGACAATGGTGTTGGAGTGACCGACGAGATGGCTCGCCAGTGGGCGAGTGAGGCTGAGTCGGGTTTTGAGGGGTTGCAGGTCGAGCCGTTCGAGGGTCGAGCTTGGGAGGACGTGGAGACTGACCCCCTGGAGCCTCGCACGATCCGGGTGAGTGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1246-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBIO01000026.1 Cutibacterium avidum strain CI878 CI878_rep_c39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1245 29 100.0 32 ............................. TTGCAGTCAAACTATTGGCTGCACCATCACGA 1184 29 96.6 32 ............................G ACAAGACCGCGACGTCCATTGAGGCTGGCGGT 1123 29 96.6 32 ............................G TCGGTCAACTATGATCTTTTGATGATGTCCAA 1062 29 96.6 32 ............................G GCGCTTCCTGCCAGAAGCTAGACGCCGCACCG 1001 29 100.0 32 ............................. GCGGACGCCAGATCCATTCCCACAGGCGCAGT 940 29 96.6 32 ............................G TGGGAGATGCGGATGAGCATGTCCGACGTCAT 879 29 100.0 32 ............................. TTCAGTGGTCATGTCGAATGTGTCATTACCCA 818 29 96.6 32 ............................A CCACCCACCCAAACAGAGTTATCGACCCCGAG 757 29 100.0 32 ............................. CACACGTCGGCTCACCATACGGCATATCACAA 696 29 96.6 32 ............................G ATCTGGAACAGTCGGTGTGGGGTACGGAGTTG 635 29 100.0 32 ............................. AGTGCGATCAATAGAGGCAAGTTTCCCCGAAA 574 29 100.0 32 ............................. CGGCTCGCCCTCCACAGGAATAGCCTTGGATT 513 29 100.0 32 ............................. ATTAGGGGCACTAAATACGATCCTACACGTGG 452 29 100.0 32 ............................. CCCAGGGCGTGAACCTCCGCAGTTTTGCACGG 391 29 96.6 33 ............................A TGCCCCTCAGACGCTCTCCCTGCTGCCTAGGAG 329 29 100.0 32 ............................. GAACCGCGACGACGTTCTGGAGATCATCCGCG 268 29 96.6 32 ............................G CTACACAAGTGGTTTACCCCTGCGTCCGGCTC 207 29 96.6 32 ............................G ACGCTTGGGCTGTCATCCCCTCCGCCGCGTCC 146 29 96.6 32 ............................G GGCGTTCGCCAGCTACTGTTGAACGTGTTTCA 85 29 89.7 0 ....G.................G.....G | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCT # Left flank : GGGGTGAGCCTTCGTTGAGGACGTTTTCGTTTCACTCGACGC # Right flank : GATAGCTCGCCGCCCACGTCGCGGTGCATCGATGTCTTCCCCGCCTACGCGGGGGTG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //