Array 1 4554-743 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHL01000024.1 Vibrio cholerae strain N2782 NODE_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4553 28 100.0 32 ............................ TTTTCCGACATTTGCACAAAGCCTTTCAGCAC 4493 28 100.0 32 ............................ TTGCGGCAATCGTGGGCGCTCCACTCTCCTTG 4433 28 100.0 32 ............................ AGTAGCTGCTAACACTCTTAAAAGCTCCGTTT 4373 28 100.0 32 ............................ GAATTCTGGAACCGGTACCCTGAGATTGGAAA 4313 28 100.0 32 ............................ TTTATGATTTGCAGAATCTCTATTACACCGGA 4253 28 100.0 32 ............................ GTCTTTTAGCGACACATCATAATCTTCTGGAT 4193 28 100.0 32 ............................ TTCATAAAAACCGCCGTGAATACTACAACTGC 4133 28 100.0 32 ............................ AATACTGGCCAGCGTTGCTTTACCATCAGCCA 4073 28 100.0 32 ............................ TGTGACAGCATTAAAGCGCCTGTTACGCCTGC 4013 28 100.0 32 ............................ TAAAGCACTTTGTTAATGGCTGTGATGCATCA 3953 28 100.0 32 ............................ TTTCATTAGTGACAGATCGTCGTAAGCATAGC 3893 28 100.0 32 ............................ TGTTTTACTGCTGGCGTTTGGTTGTATCTCTC 3833 28 100.0 32 ............................ TGATAGACCCATTGACATTAGGATTTTTTTCT 3773 28 100.0 32 ............................ TATCATGCTTATATGGGGCTAATGCTCCATCT 3713 28 100.0 32 ............................ TCATCATGGCCAAGACCGAGCAAACCGCTCAC 3653 28 100.0 32 ............................ TGCACATGCTTCAACGGGATTAACATCCCAAA 3593 28 100.0 32 ............................ TCTGTGGCTGTATAACATTCCCCCAAACATAC 3533 28 100.0 32 ............................ TTCCACCGTCTCAATGGTGCTAGCTCCAGCGT 3473 28 100.0 32 ............................ ATAGAATGTACCCGTTTCCTCTTCCACTTCCG 3413 28 100.0 32 ............................ TAGAAGCGGTGGCGAAGCTTGGCGAGTCAGTG 3353 28 100.0 32 ............................ TGTGACGTTTCATGATCGGATTCTCTGCCGTA 3293 28 100.0 32 ............................ TCTATCTATCGAGGTATGATCTACTGGATGCA 3233 28 100.0 33 ............................ TTTCCGAATGTAATCAGACGATGCTTTTTGTCT 3172 28 100.0 32 ............................ CAATGGAAAGAAAGCACCCAAGGAAGCTTTTT 3112 28 100.0 32 ............................ TGAAGATCATAGGATTCTGTGTCATCGCGATC 3052 28 100.0 32 ............................ ATTATTTCGAGTCCTCAAGTTGTTTGATGTAG 2992 28 100.0 32 ............................ ATACAGTGAACGCTCGACAAGCTCCCACGCCT 2932 28 100.0 32 ............................ TTTCTCAATGCATATAAAAAGTTTTGGGATTC 2872 28 100.0 32 ............................ GTTAAATGACTACTTCGCCGCACAAGGGGCGC 2812 28 100.0 32 ............................ TCACCTGTGCAAGCTGACTCGTCAATCTTGCT 2752 28 100.0 32 ............................ TTGAGCGAGTAGCGCAGATAGCCCAAAGTCGC 2692 28 100.0 32 ............................ TTAAAGCCAGAAGCGAAATAGACCACAAAGGT 2632 28 100.0 32 ............................ TACATCAACCAAGCACTGGAACAGGCCGACGA 2572 28 100.0 32 ............................ ATTTTAAATTATCAAGATGGTGACGTGGTGGA 2512 28 100.0 32 ............................ CACTGCGCTTGCTGAAACTTCTTTTATGGCTT 2452 28 100.0 32 ............................ AGCAAGCCGAAGAGCAGCTGATCGCGCTTTAC 2392 28 100.0 32 ............................ TTGTCCAAACATCGCTAACCACCCACAAACGT 2332 28 100.0 32 ............................ AATCAAACACAACCATTCGGCCACCGCCTTCA 2272 28 100.0 32 ............................ TTAAAGTCTCTTACCGATCTACGCGCCAAAGT 2212 28 100.0 32 ............................ GACAGTACCTGCCGCTCAATCATGACTTTTTT 2152 28 100.0 32 ............................ TCTTACAATCGAGCTCTCAGCCGAACAGCAGT 2092 28 100.0 32 ............................ TGCAAATTATTGGTCTGCAAAAGCCCATTTGA 2032 28 100.0 32 ............................ AGTGTGTTAATCAGCAGCCAACCGCAGCCATT 1972 28 100.0 32 ............................ AGCAAGACTTTTAAAATGTAAGGAGACATCGT 1912 28 100.0 32 ............................ TGGGTTGCCATCGGTTTATGTGTGTTTGCTAT 1852 28 100.0 32 ............................ TCAATGACGAGGGCTAGTCTTTTTATCGTTAC 1792 28 100.0 32 ............................ AAATGTCATTAAGGAACCACAACCAAGTTGGG 1732 28 100.0 32 ............................ TGTTGTTGATAGTACGGCGAGAAAATGCTGCT 1672 28 100.0 33 ............................ CAAAATGACAGCGAGAAGAAAACCAAGATTCAA 1611 28 100.0 32 ............................ TTTAAATCGTTTGAGTCGAGCGAGATTGATTT 1551 28 100.0 32 ............................ AGTACATTGAGTTTTACTACAAGCCAATGCTG 1491 28 100.0 32 ............................ GTGAGATTTTGGCGAGTAGCGATCGGACGCTG 1431 28 100.0 32 ............................ TCTAGCGCTAGCTCTATAAAGCTTTTTAAGTC 1371 28 100.0 32 ............................ TCTAGTTGAATGTTTAAGCGCCACAAGGCAAC 1311 28 100.0 32 ............................ TGCAATGCTCTAAGTGAATTCAATTGACGCTG 1251 28 100.0 32 ............................ GTCTCTCTCGGCTTTTCACTTGTCGCTTATTC 1191 28 100.0 32 ............................ ATAAGAGACAATCACCCAGCGTTGCTCTGGAT 1131 28 100.0 33 ............................ TTTGTAAATATAGTAATCGCGGCTAATTTCATA 1070 28 100.0 32 ............................ GTGAGCGCGTAGAAAAAGAAATTCTCGGTGTC 1010 28 100.0 32 ............................ GTTAGGGTCTAACTTTTCAGGAAATACATGAA 950 28 100.0 32 ............................ ATTAAACTGATCGCCTTTGGTGACTCCATCAC 890 28 100.0 32 ............................ TTCTGGTGGGAACGGCAGTCAAGCTAGCGCTC 830 28 100.0 32 ............................ GTGTTTAGCTCGTTAACTACACCCTTGTTAGC 770 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 64 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGATTCGTTGATCAATACCGATTTCACCGATCACCAAGCAGTTGTTGCCGCTACAGAGAAGATTTCTAATTCCTACAGTTGTTTAGTTGACGTTTCTTCGGAAGCAACAGCGGAAAACTTGCTAGATAAAATCGTATCATCAGTAAAGAACGATCAAGTGTTAGCAATTATCGAAAAAGGCGTGGCACAAGCTAAAACGGCGAAAGAGTGCGTTATGTAACCAGTGTGTGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGGCGCAAGGCATGACACACACATTTATAGGAACGATTATGAATACAATGGAATTTGTTCGCTCACTATTGATCGAAAAGGGTATTAGTGCTCGTTTAGCTAAACCTTATCCATATCTATTCTACAAATTTGCTCGTTTAGATATGAAGCCTAGGGTGTTTGAAAGTCCATTGAAACTATTTGTTCTCCAATCAGTGCTTGGTACTGTCTTTTGGGGTGGGTTCATGTGGCTCTTAGTCTGGCAGTTTCAAGGCTTTGTTGCTTCTCAAGTTTATGCGTCGATGTTTTTTGGTGTGATTACTGGTTTATTACTTGCGGTTGAGGTCGCTAGGATACGCCGGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32927-29838 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHL01000020.1 Vibrio cholerae strain N2782 NODE_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32926 28 100.0 32 ............................ TGACAAACGGGCAGCTTCTTGAAACTGGCGAA 32866 28 100.0 32 ............................ TGAAAAGAAAGTGCTAATCGGTTCGCCAAACG 32806 28 100.0 32 ............................ GGAATTGCAAATAGATACCAATATATAGCCAT 32746 28 100.0 32 ............................ TTGCCCTGTAAAGTGCAGCGCAGGAACCTACG 32686 28 100.0 32 ............................ TTTTGCGTTGGCGTCAGCTTAGCGATAGGGAT 32626 28 100.0 32 ............................ TTGTTTGCGGTTTGACCAATAAAAATGTCACT 32566 28 100.0 32 ............................ ATCATACCTAACTAACGGCAAATCTCGTATTG 32506 28 100.0 32 ............................ TGAACGCCGATAAATGAAAGCGCCGTGTAGTC 32446 28 100.0 32 ............................ TAAAGTTTGGCGCTAGATAGTTCACCAAATAC 32386 28 100.0 32 ............................ TTTCATTCGGCATTTCAAGTGGGGCTAGGTGC 32326 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCGGAGGTTTTCGC 32266 28 100.0 32 ............................ ACAAGAACATTCACAACCAGACCTATCGTTCT 32206 28 100.0 32 ............................ TTCAATTCAGCGGCGAAAGTATCAGCAAGGTT 32146 28 100.0 32 ............................ GTGAGCGCGTAGAAAAAGAAATTCTCGGTGTG 32086 28 100.0 32 ............................ GTAAAACGTGGGTGGCTTGACCTTCTGGCACG 32026 28 100.0 32 ............................ TGCTTCACCAAGTGAACTTGGCAACACTCATC 31966 28 100.0 32 ............................ TAACGGATAAGCAGATCAAAGCCCTCTACTTT 31906 28 100.0 32 ............................ TCTTTCCACACGTCACGGTAGTCAAAGCTTGG 31846 28 100.0 32 ............................ TTGATTCTATGCGTGCAAGCTTTAAAGCCATT 31786 28 100.0 32 ............................ TATCGATTTAATCGACTCTTTACCAAAAATCT 31726 28 100.0 32 ............................ TGACGCTCTGTTTTCCCATTTCCGCTGTAAGT 31666 28 100.0 32 ............................ TAATGCATGTGTCACAAGGCCAACAACCCCCG 31606 28 100.0 32 ............................ TGTGATAGAGGCTTAGAAGGCCACTGTTATAT 31546 28 100.0 32 ............................ ACGAAGGCGACCACCACATTATTTTATGGCCA 31486 28 100.0 32 ............................ TGTAAGTTACGCATCGAGCCACCAGTTTGGTC 31426 28 100.0 32 ............................ ATCGAGTTTAAACTTGATAACGGGCAAGAAGT 31366 28 100.0 32 ............................ TTCACCAAACTCAGGTACTTCGACATCAAGGT 31306 28 100.0 32 ............................ GGAAGCTCTTTTGGTTTATGTATCGAGAGTTT 31246 28 100.0 33 ............................ AGCTCATCACCATACTCAGCCACAATACCTTTT 31185 28 100.0 32 ............................ ATATGCGCTATTTACTCATCGCATCATTTTTT 31125 28 100.0 32 ............................ TTTTGTTTTTGTTTCCAATACGTCAGGTGAGG 31065 28 100.0 32 ............................ TTCTGCAATCGCCGCATTCATTGGATCTTGTC 31005 28 100.0 32 ............................ AGTAGCCCAATACATCACCCTCACCACTCACG 30945 28 100.0 32 ............................ CTATCAAGATTTTATCGATCGCGGTTACTTCA 30885 28 100.0 32 ............................ ACAATGTATTCAACGGTTCGGGAGTGGCTCGA 30825 28 96.4 32 ...........T................ TCTTGCTCTTGTTTTGCTGTTCTCACAGCAGA 30765 28 96.4 32 ...........T................ CGTCCGACTATCACGATAAGAAAACAGCAAAG 30705 28 96.4 32 ...........T................ CAGGGCGAGCCATTTCGCACAGTTCGACCAGG 30645 28 96.4 32 ...........T................ GGCTCGGCACGATTAAAGCGGATATGGGGTTA 30585 28 96.4 32 ...........T................ ATATCTGCCACATACTTACGCAAACTCGTATT 30525 28 96.4 32 ...........T................ GGCAAGGCGCTGGTGGAGCGCAACTCCAAGCG 30465 28 96.4 32 ...........T................ GCCTTTGCTCGTGTGAATGGTATTCGACAATT 30405 28 96.4 32 ...........T................ AAACAGAGAAACCTTGTGCCACTCGGTTTTCT 30345 28 96.4 32 ...........T................ ACATCAGGACGGTACACCGCATCACCATATGC 30285 28 96.4 32 ...........T................ ACACCAACTCATCAATATCTAACGACCAGCTT 30225 28 96.4 32 ...........T................ AAGCTGAGACTTTGCATAACCTTTTACTGAGC 30165 28 96.4 32 ...........T................ AGCACAGCAACCACAGCAAGGCGGTTACAGCC 30105 28 100.0 32 ............................ TGAGCCGCACAAGCCGAGTAAACTCGGCGCGG 30045 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 29985 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 29925 28 100.0 32 ............................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 29865 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 52 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //