Array 1 1492-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799367.1 Pseudomonas aeruginosa strain HMSC058A10 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1491 28 100.0 32 ............................ TCTTCGCTTGGCCAGGAACTTCGCCATCCAGG 1431 28 100.0 32 ............................ ATCCCGAAAGCGCTTACCACGCATGGTTGCGA 1371 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1311 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1251 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 1191 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1131 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 1071 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 1011 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 951 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 891 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 831 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 771 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 711 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 651 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 591 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37471-38756 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799421.1 Pseudomonas aeruginosa strain HMSC058A10 Scaffold188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37471 28 100.0 32 ............................ TCTATGCCATGTTTGGCCTGAACAGCAAGGAA 37531 28 100.0 32 ............................ AATGAGCCGCGACAGGGCCGAAGCCGAAAAAA 37591 28 100.0 32 ............................ GAAGCCGGCCCCTGGGCCGGCTTTTTTTCGCC 37651 28 100.0 32 ............................ ACGACCGGCGTGTAGTAGCCGTAGGCGACCAA 37711 28 100.0 32 ............................ TGGCCGAACAGCCAGCCATGCAGGCCGTGACC 37771 28 100.0 32 ............................ GAGTTCCAGCCAAGGGAAGTCCTACCGAAGCA 37831 28 100.0 32 ............................ AGCCCCAGGCAGAACACCCGCTGACGCCTCAG 37891 28 100.0 32 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGG 37951 28 100.0 32 ............................ GATTGCGGCAGCCTACTGGCCTGCCCTCAAGA 38011 28 100.0 32 ............................ AAGTCTTCACGCTCAAACCAGTCTTCCGGCAG 38071 28 100.0 32 ............................ TCAGCGTGATCCGCGAGCAAGAGGGCCGTATC 38131 28 100.0 32 ............................ GATGAGTTCGTAGGTCGTCTCATCGACGCGGA 38191 28 100.0 32 ............................ AGTGACGAAATAACAACTCGTAGTCTTCGATG 38251 28 100.0 32 ............................ TCGTAGGTTTCTTCGTCGTAGCGCGACTTGAT 38311 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 38371 28 100.0 32 ............................ TGGAGCGCCAGCGAACTGACCGCAAAGGAAGT 38431 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 38491 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 38551 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 38611 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38670 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38729 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48087-47278 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799421.1 Pseudomonas aeruginosa strain HMSC058A10 Scaffold188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48086 28 100.0 32 ............................ TGGATTGGCCAGGCGGATTACATCACCAGCCA 48026 28 100.0 32 ............................ AAACGGATTTCGATCCCGCTGATGGACGGTGA 47966 28 100.0 32 ............................ TCTTGAAAGTGAGTCCGGGCGAGGCTAACCCA 47906 28 100.0 32 ............................ TGGTGCTCGTCCAGGGCGCGAATTCAGTACCT 47846 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 47786 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 47726 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47666 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 47606 28 100.0 32 ............................ AACAGCGCGGGAGTGGCGCGCTCGATCGGCAA 47546 28 100.0 33 ............................ AGGGACGTCGCGGGCCAGACCTACGAACTGTTT 47485 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47425 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47365 28 100.0 32 ............................ TCGAAGGGGGGAAAAATCCGCGAATGAGAGGG 47305 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //