Array 1 1483-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDM01000003.1 Pectobacterium versatile strain S4.16.03.3F contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1482 29 100.0 32 ............................. CAAGCCAGTGAGACCGATCGGCGTTATTGAGG 1421 29 100.0 32 ............................. GTCATTGCCTGCGGGGGTATTATGAATAAACC 1360 29 100.0 32 ............................. TGGCAGCCGGTCACAATATCACTGTCACAACG 1299 29 100.0 32 ............................. TGACAGTAAGTCAGATTGAGCAAAAAACTGGC 1238 29 100.0 32 ............................. TCTGATTTGTTCATGGAATTTACCCGTTAATG 1177 29 100.0 32 ............................. GTTATCTCTGTAAAGCCGCTTAACGATTCAGG 1116 29 100.0 32 ............................. CTGCGCGTCTGGCGCTGGCGTCATCCGCAAAC 1055 29 100.0 32 ............................. CACAATGGCAATGAAACGCTATGGCGCTGACG 994 29 100.0 32 ............................. GTGTAGCGTATCATTTTGACCCCCGCTATCAT 933 29 100.0 32 ............................. CCATTGCACTTTCTCCGGGCATTAAAAAACCC 872 29 100.0 32 ............................. CACGGGCATTGCGCGCCGCGTTCTTTCACTAG 811 29 100.0 32 ............................. ACCTGTCGATTGACCAGATACCGAAATTTCTG 750 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 689 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 628 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 567 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 506 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 445 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 384 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 323 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 262 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 201 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 140 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCTGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GCCGTATGGCTCTAAATTCCCAACGTTGGAAGAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5298-3679 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDM01000003.1 Pectobacterium versatile strain S4.16.03.3F contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5297 29 100.0 32 ............................. CGGTACGCTCCGCAAGGTCGGCATAATCAGAA 5236 29 100.0 32 ............................. GCGGCGATGTACCCCACCACCGTTCGTTCCCA 5175 29 100.0 33 ............................. GGTAACGGCATCTTGCAAAAACTCTGGCGCGAA 5113 29 100.0 32 ............................. TAACGGGCGAAATACATACCCTCTTCTTCACA 5052 29 100.0 32 ............................. CCTATTAACCTTAACTACATTTTCATTACTTT 4991 29 100.0 32 ............................. TATTCATGTTATTTACCAGTCCCCACCCATCA 4930 29 96.6 33 ............................A GATGAGGATGTTTGTGTAATTGATATTTCAAAC 4868 29 100.0 32 ............................. TATTTTTCCTTTACTGGCGGCTGGTCAGTAAT 4807 29 100.0 32 ............................. GGAGTTTCGTGGGATGTATTCTTGTTCACATA 4746 29 100.0 33 ............................. GGGATCATCAAATGGCTCTTCTGTTCTCACCTT 4684 29 100.0 32 ............................. GCATGGTGCATCGCTAATTGACGCTTTAGGCC 4623 29 100.0 32 ............................. AAGGGCTTTTCCTCGGGGGGTGGCGGCGGTGA 4562 29 100.0 32 ............................. CTCCAGTTGCCGGCGTCCCGTCCTCGCGACGG 4501 29 100.0 32 ............................. AACGGCCCGTAATCATCGCAGTCCGTTCAGCT 4440 29 100.0 32 ............................. GTCGTATCAATCAGCTCGTAGCGCTCCTGATC 4379 29 100.0 33 ............................. CTAAACGCGGTGAGCTCGATACGCGTGAAGATG 4317 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 4256 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 4195 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 4134 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 4073 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 4012 29 100.0 32 ............................. CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 3951 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 3890 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 3829 29 100.0 32 ............................. CATGACGCAGTAGTTGTTATTAACAGGGGTAC 3768 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 3707 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23642-23195 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDM01000026.1 Pectobacterium versatile strain S4.16.03.3F contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23641 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 23581 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 23521 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 23461 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 23401 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 23341 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 23281 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 23221 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32599-34308 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDM01000026.1 Pectobacterium versatile strain S4.16.03.3F contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32599 28 100.0 32 ............................ GCGCAACATTGCGCTGAATTACATCGTGAGAG 32659 28 100.0 32 ............................ TGCTAACGTTTTCACGCCTGAACTGAACAGCT 32719 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 32779 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 32839 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 32899 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 32959 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 33019 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 33079 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 33139 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 33199 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 33259 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 33320 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 33380 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 33440 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 33501 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 33561 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 33621 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 33681 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 33741 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 33801 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 33861 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 33921 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 33981 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 34041 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 34101 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 34161 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 34221 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 34281 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGGGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 41663-40733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDM01000026.1 Pectobacterium versatile strain S4.16.03.3F contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41662 28 100.0 32 ............................ CATAACACCATGCTCTATCAGGGTGTGAGCAA 41602 28 100.0 32 ............................ TTGGGCAATAAATCTTTTATGGGTGGCATTTT 41542 28 100.0 32 ............................ GCAGCGCGCTACCTGTTTGTCTTTGGCGTATT 41482 28 100.0 33 ............................ GTCAACGGGGTGCCAGCGCGAAAGCGAGTATCA 41421 28 100.0 32 ............................ TGACCGATGATCTGGCCCGGCAAGTCGGAGTT 41361 28 100.0 32 ............................ AGTTGAGATACATCTCAGCGGAATCAGGTTTA 41301 28 100.0 32 ............................ CGCTATCGTCCAAAGATTTTGGTGAATGAAGA 41241 28 100.0 32 ............................ ACGATTAAACAGATACTGAGCGGCTGGCGTTC 41181 28 100.0 32 ............................ ATAATGGCAACACATATCAAGTTGATGCCCGA 41121 28 100.0 32 ............................ GTCATGGATGGATAAAGACGAACCGGCCAAAT 41061 28 100.0 32 ............................ GGGGCCAGCCTCTGCGGAGTTGACGATAAAGT 41001 28 100.0 32 ............................ GCCAGCAGTTAACCCTAAAATATGAGCAACAT 40941 28 100.0 32 ............................ TGCTGATATTGTCAGGCTGCGTCAGCGACCGG 40881 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGTAGCGACGA 40821 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 40760 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGGATTTACTGCCGTGTAGGCAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //