Array 1 190450-191137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSM01000086.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190450 28 96.4 32 .............C.............. CGAACACAGGGGCGCCCCATCCGGCGCAATCG 190510 28 100.0 32 ............................ ATCGACGACATCACCGTCCTGGTGCTGCGCAA 190570 28 100.0 32 ............................ TTGCGCAGCTCGTTGAACCAGCCCAACGGGCC 190630 28 100.0 32 ............................ TCGACCAGTTCCGCCGGCGGCACCGGTCGGAC 190690 28 100.0 32 ............................ TGCCGCTGCCTATGTTCGCGACATTCAGGTTG 190750 28 100.0 32 ............................ ACGCACGGCGGCTGCGCCGGATTCGAGGTCGA 190810 28 100.0 32 ............................ ATCGCGGTCATGTTGGCCGCATAGGTGCTGGT 190870 28 100.0 32 ............................ ATTGGCGGCCAGGTCAGCCAGCGGCACCAGGT 190930 28 100.0 32 ............................ ATCACGGCCACCCGAACACATCGCCGACCCAC 190990 28 100.0 32 ............................ ACCGAGAGGGGCGTTCAAATCCCGACCTTCAG 191050 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 191110 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ATTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1258-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSM01000100.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1257 28 100.0 32 ............................ CGAAAAACCAAGAGTGGTACAACAAGGCTTCG 1197 28 100.0 32 ............................ TGGGTGCGCTGTCCCTCGGCGCGGCCGATGTC 1137 28 100.0 32 ............................ AGCAGTACGGGCGCACCTGCCGTCGCTACGAC 1077 28 100.0 33 ............................ CTTCCGCGAACCGACTACACCGGCGAAACGGAT 1016 28 100.0 32 ............................ TTTGTCCCTCCCGCTGCGATCACCTTCGCGAG 956 28 100.0 32 ............................ TGGTCGACAGTTGCCATGAGTTCGGGTTGCTG 896 28 100.0 33 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTCC 835 28 100.0 32 ............................ GACGCCCTGGTGGCACGCCACCGCGACGAGAT 775 28 100.0 32 ............................ ATCCACACCACAAGCCCCTGCGGCTCGTTCCA 715 28 100.0 32 ............................ AACTCGCCGCTGTCGTGCTCGTCATCGTGCTC 655 28 100.0 32 ............................ GACAAGAAACAACCTCCTCTCGGTGTGAAGCC 595 28 100.0 32 ............................ TGATCGCCCTCGGCGGAAAGGTGAAGTTTCCT 535 28 100.0 32 ............................ GATCTGCAGCGGCGGTTTGTTCTTGCGCTTCT 475 28 100.0 32 ............................ ATCGCGTAAGTGGTCCCGCCGGCCGTCACCTC 415 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 355 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [330] Deletion [320] 315 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 255 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 195 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 135 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGACGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATCCGGCACCGTTCATCTCCTCCTCGCTCTGTAGTGGTCAACCCATCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10081-9034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSM01000107.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10080 28 100.0 32 ............................ ACTGGCACGGCGTTGCTCCAGTGGCTGGTCCG 10020 28 100.0 32 ............................ GGATCATCCCGGCGGCCATCGTCGCCGAGTGG 9960 28 100.0 32 ............................ TTTTGTCGATCGCGGATCTGCACCTGGTCGGA 9900 28 100.0 32 ............................ ATGCGCTGGACTCGCCCATCCGGGCGGCTTCG 9840 28 100.0 32 ............................ AGTCAGGCAGTAGCGGCCGAGCTTCAGCGAAG 9780 28 100.0 32 ............................ CGAAGCTGACGCTAGTTGCGATGTGTCTGGCT 9720 28 100.0 32 ............................ TCACAGGGGCGATCGAGGCTCCCCCCCTGGCT 9660 28 100.0 32 ............................ TGTCGCAGTACGAGGTTCGGTGTGCTGCCCCG 9600 28 100.0 32 ............................ TGCGCGGGCTGGTCGACAAAGCCGGAATCAGT 9540 28 100.0 32 ............................ CATTCCACTCGGCCGGGATCGGCTGGCCGTTG 9480 28 100.0 32 ............................ GCGCCCTGCTGAGCGAGCAGGAGGGAGGGAAG 9420 28 100.0 32 ............................ TTGGATGCGGAATGTGCGGTCAGCCACAGCAC 9360 28 100.0 32 ............................ CAGCAGGAGAACATCGACACCGCCGTGCGGCT 9300 28 100.0 32 ............................ AACGGAACTACCCGCACGGATGCATCGAACGT 9240 28 100.0 32 ............................ ACCAGGATAGGATCGACCTCGGCGCAGTACGC 9180 28 100.0 32 ............................ AATCGCAGTTCCAATGATCGGAACGACAGATC 9120 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9061 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //