Array 1 92612-91278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081861.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 92611 29 96.6 32 .......T..................... GCCGCAACGATGCGGCCTTTTGTTTTATTTCA 92550 29 96.6 32 .......T..................... TATGAGCATTGGGAATCTGAGGAGAATTAAAA 92489 29 96.6 33 .......T..................... TAGAGAGCTTTGGCAATCTCAGTGAATACAATA 92427 29 93.1 32 .......T....................T TGCAAAGTCGCAAGGTTCGTCAGCTATGAACC 92366 29 96.6 32 .......T..................... GCCAAGCTGTAGCCAAAGAAGATAAACCATCG 92305 29 100.0 33 ............................. ATTTCATCCAGTAGCAGTTTGTTACCATCATGC 92243 29 100.0 32 ............................. CAACAATGTCAGGGTCTGAAGCTGGTACAAAA 92182 29 100.0 32 ............................. TTAAATGTAAAAAGTCTCGATTTATTAACCTT 92121 29 100.0 32 ............................. TATGCGCCAGCGGCATTGGATATGTTTGGTAG 92060 29 100.0 32 ............................. AAAATTTGTATTTGACTCATTAATAATCAAAT 91999 29 100.0 32 ............................. AGGATTGAGAAGCGGCTCGACTCAATAGATAA 91938 29 100.0 32 ............................. GTATCAATATGAATCCTAGGGCATATTTCTTT 91877 29 100.0 32 ............................. CTATAACTCGATATGGCAATAATGACGAACAC 91816 29 96.6 32 ...................T......... CTAAAACTAGGTTTGGATGATTGTCACCACTT 91755 29 100.0 32 ............................. GATTTGAGTGAGGTGCATCAATCTAATTTGGC 91694 29 100.0 32 ............................. GATTTGGGGGCGCAGGTAATTACAGCAACGCA 91633 29 100.0 32 ............................. CAAACTAAACACCCCTACATACCCCGCCATAT 91572 29 100.0 32 ............................. GTGGGTTATTTGGCCCAATTAACGCCGAGCAA 91511 29 96.6 176 ............................T GAGTTTTTCAGGTCTGAATCATGTGCTGTAAATCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTCAGCAGGCTGCGAAACGATGATGACTCCAGACTTCCTGCCTTTCGCCCTTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTAC 91306 29 75.9 0 T.CGC.........A.....A.....T.. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 20 29 97.4 40 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : CATTGGTGACGAAGGTCATCGCAGCGGAGGACCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGCTTGGCGGTGTGGCTACTGGAAATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGGCGGCAATGCCGTTATGGCCTGGGCAACCAACACAGAATCAGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCGGTTGATTTTCAGGGGCTGAGATTGGTGAAGTATACGCCCAAAGCAAATGACAATCCGGGAGCTGATTAGCGAACTTCCCTCGTTCTTTAATTCGATTTAATGCTCTTTAACAAGTTGGAGATTAAGATTTTTACCTCATAATGAGAGGTACTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GAGTTATTCAGGTCTGGATCATGTGCTGGAATTTATTTATGAAGCTGTTAACCGGTGGGGACTTTGGACTTGCTCATACACGCTCCGGATTAAGTGATAGCCACCCTTGTTCGCCGGTTACTTATCTACATGGCCTAAATCACGCTCAGGATCTAATAAATCTCTCACTCTTCTTTTGAGCACCTTGGCTTCTGGAAAGCCATCATCTGCTTTGCGGCACCAAATTAACGTATCGTTGTAGTAAATTTCGAATACGCCTTTACTTGCAGGCGCGAGCGCAACTTGTTTTAAATCGTCGGAGAAAGTTGAAAGCAGCTCTTGTGCAAGCCAAGAAGCTCGCAGCATCCATTGGCAAAGCACGCAGTAATGAATTGTAATGATCGGTTTTTGCATGAATTTACATTAACTTGAAGATTGTGGTTGGATTTTAGCACTGTGATTTATGGTGTGGCTAGTATGAAAAAAACGGGGGTTACCCCCCGAAATTATCCAGGGAGACC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106037-102955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081861.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106036 29 100.0 32 ............................. CAATATTATCTAAACAAAATACCGAACTCGAT 105975 29 100.0 32 ............................. GAGTTGGTCGTTGCTCGTGATAAACTCAAGGA 105914 29 100.0 32 ............................. CGATGCCAATGGACGTATTGGTGATATCGCAT 105853 29 100.0 32 ............................. TGGACTTCAGATATGGCTGTAAACTACTTTAA 105792 29 100.0 33 ............................. TTCTGTAACATCAGATTTAGCCGCTAAAATTTC 105730 29 100.0 32 ............................. GAATAATTCTGCTTCCGTAGCATTCACACCAG 105669 29 100.0 32 ............................. TTCGTTTGCATAGGGCTACAATCAAATACAGG 105608 29 100.0 32 ............................. ACCTCAGTTGAGTCAACCTGAACAGGACTTCT 105547 29 100.0 32 ............................. TAGAAGCTATCGCAGATCAATTAAAATTATTG 105486 29 100.0 33 ............................. CTGTTAATTATGATATCCACGGCTCTTGCGGTG 105424 29 100.0 32 ............................. TTTAGAACTTGCTTACGAGTCAGGTAGGCTCA 105363 29 100.0 33 ............................. CACTTTCAGACGAAACAGACCGAACAATTAGGA 105301 29 100.0 32 ............................. GTTATTGGTTGTATGTAGAGAAAACTGGCCTA 105240 29 100.0 32 ............................. GCCGTTATTTTATGTTAGTGACAATAACTTCC 105179 29 100.0 32 ............................. ATTAACTTTCAGAGCCAATCCTCATTATACGA 105118 29 100.0 32 ............................. ATTGTTCAATAGAACTTGTGATGTCAGACATG 105057 29 100.0 31 ............................. TTACTGATCGCGTGGAAGGTACACCATCAGA 104997 29 100.0 32 ............................. ATACACAGGCCATAAATAGCCTATGCCACCCC 104936 29 100.0 32 ............................. GTAGACGGTACTTGGGAACGTTGCGATACCAA 104875 29 100.0 32 ............................. CGATTTGCAGATTTCCCCGAGGATGAGAACGT 104814 29 96.6 32 ............................A TGGGCCAAACGCTATCCATGATATGCGCTTAC 104753 29 100.0 32 ............................. TAGTTATATACCCACCACACACCGTACAGCGT 104692 29 100.0 32 ............................. TTGACGCCCGTTGACAGTTACGACGAACAGTT 104631 29 100.0 32 ............................. TAGGAGTCCCATCCCACTCAATTGCGTAAATG 104570 29 100.0 32 ............................. CTCCGTCTACTTCATCCAATGTTTTGCAGTCA 104509 29 100.0 32 ............................. CGCACCGACTTTTTCAGATAGCAATCTAGTGT 104448 29 100.0 32 ............................. CTTCACGTAGCCTTTGCCCCATAGTGATTCAA 104387 29 100.0 32 ............................. TGTTCCGCCAGATGGGCCAATGGTATGTGCGT 104326 29 100.0 32 ............................. CCAAATGGCGGCGGCCATCGAGCAAAGCAAAC 104265 29 100.0 32 ............................. CTAGTTTCTTTATCGCCAGAGTCGGGCAAGTA 104204 29 100.0 32 ............................. GGTCGCTCATGCGGCCTTTTTTCTTGCCTGAA 104143 29 100.0 32 ............................. GGATTTGTATATTTCAAGGGTTGGCAAGGTTG 104082 29 82.8 32 ..........T.CGGA............. ATACGGGAGCACCAATATAACGGATAAAACTA 104021 29 82.8 33 ..........T.CGGA............. CCCATGCGTTTAATATCTGCATCACTTAGACTC 103959 29 82.8 32 ..........T.CGGA............. GTCTGAAAATTCCTTAAATTTCAGACAGAAGA 103898 29 82.8 32 ..........T.CGGA............. GGCGTCAAAACACCTATGATGACGGCCTAGTC 103837 29 86.2 33 ..........T.CG.A............. TTTTAGCATAGCTACAGCAACAAGAAATAAACC 103775 29 86.2 32 ..........T.CG.A............. ACTCTTTTTTACGAGATGCACGAGTCTTGGTC 103714 29 86.2 32 ..........T.TG.A............. TTAAGGCCGAGTGTTGGCATTGCGTTGGCAGA 103653 29 86.2 32 ..........T.TG.A............. CGCTCTTTTTAGAGATCCAGCAAAATGAATTG 103592 29 86.2 32 ..........T.TG.A............. TGGGAGTGGGTAGGGGTTCATGGCGCTTTCAG 103531 29 86.2 32 ..........T.TG.A............. GACAGTGCAATGCATACGATCACTGTTTTTAT 103470 29 86.2 32 ..........T.TG.A............. AGATTTTGACGTCACTCACGAGTATCAAAATG 103409 29 86.2 32 ..........T.TG.A............. GAAATACACATGAAAGGAAGTTCAGTGACTCC 103348 29 86.2 32 ..........T.TG.A............. GATTGTACAGCATGGAAACAGAAATTAAACGC 103287 29 86.2 32 ..........T.TG.A............. CAAAAACAAAAACCATAAAACGCATGGCAGTC 103226 29 86.2 31 ..........T.TG.A............. CCCTCAGCAAGCGCTGTGTCGGTGTACTTGC 103166 29 86.2 32 ..........T.CG.A............. GATTTGAGTGAGGTGCATCAATCTAATTTGGC 103105 29 86.2 32 ..........T.CG.A............. GTGCAGTTGCACATTGGCGGTTGGGCTGAGTA 103044 29 100.0 33 ............................. CTTAAAACCGGAGGTTGATATGGCGCACTCTGC 102982 28 79.3 0 ..........T.CG.A.........-..A | ========== ====== ====== ====== ============================= ================================= ================== 51 29 94.7 32 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : AAGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGTGAAGCAATCGGGTTCGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGACTGTATCTTGAAGACCTATATGTGTCACAAGACAAACGCGGTGTTGGCGCAGGTAAAGGGATCATGAAATACTTGGCAAGACTTGCACTACAAAAGGACTGCGGTCGTTTTGAGTGGGTGGTACTTGACTGGAACAAGCCATCAATCGATTTTTATGAAAGTATCGGTGCTAAAGCACAAAACGAATGGATTATTTATCGCCTATCAGGGCAAGAGCTCATCGATTTTGCTGAGCAAGTATAGTGAAATTTATTGGCCTGTTGGCTATACATTATTTGAAGAGAAACCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAATATTGTAAGTGTGATTTTTATTAATAGAAACAATGATATATTTTTAGA # Right flank : ATAGGACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATCTCTCTGTCAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTGTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACTGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCACGGCGTTATGTCACCGACTTTATTGAGCGTTATCAGATTGCCGCAAGCTACAATGAGTCTGAGAAAGCCTATGTGCTGGCAAGCCCCTTTACACCTAACTATATCTCTCAGGATTTTACTGAGTATACTAGTCTCA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1031961-1029694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081861.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1031960 32 100.0 34 ................................ TATTGGCGCACCAAAATGACATAGGTGCCATGAG 1031894 32 100.0 35 ................................ TAAATTGAGCGACACATTACCTAGCATTTCACTGA 1031827 32 100.0 34 ................................ ATCGAATGTCATTTTCTTATCAGTCATGATAAAT 1031761 32 100.0 34 ................................ TCACCAACCGGCTCACCTATTAATGCTGCCTTAA 1031695 32 100.0 34 ................................ TATGGTCACAACGATAGAAGAAGAAAAAAGGCGT 1031629 32 100.0 34 ................................ TCCATAGAAATCACGCCTAATTAAACGTACAGCT 1031563 32 100.0 34 ................................ ATCGAGGAGTGTCGCAATGAAAAGAAATATTTTC 1031497 32 100.0 33 ................................ CCATGCTTGCTTTTCGTTCGTGGCGCCGCAGTA 1031432 32 100.0 34 ................................ TGGCTCAAACTCATACGCAATAGCAAAATTAAAA 1031366 32 100.0 33 ................................ TTCCCAAGTTGCTGGCATAAACTGGGCAATACC 1031301 32 100.0 33 ................................ TGGGATTTCGATTGCACGATTATCAGTATCAAT 1031236 32 100.0 33 ................................ AAAAATTACGGCTCAGTTGCCCTTGATATGGAC 1031171 32 100.0 34 ................................ CTTATGTGATAAAATTAATTGACATTTATTTAAT 1031105 32 100.0 34 ................................ GAGAGAACTTCAAAAGTTAAACATCCTCAATCAA 1031039 32 100.0 34 ................................ GCAGTTAGAGGGCGAGAGCGTGCCTTATTTTGAC 1030973 32 100.0 33 ................................ GCTAACAACGAAAAGAACACCACTAAGAAAAAG 1030908 32 100.0 35 ................................ GAGTACATCTTTACCACCGTTGGCGGCTTTATAGA 1030841 32 100.0 33 ................................ TACGGTTAAGCCACGTGCTTTTACTTGCTCTGC 1030776 32 100.0 34 ................................ CAAGGCTAAAGAGTTGTTCGAGCACACACGAAAA 1030710 32 100.0 34 ................................ TAGAACTATTTGACTGTAAGTAGTTAAACCACCT 1030644 32 100.0 33 ................................ CATGAGTAAAATGTAAACCCCTCATTGCCACCG 1030579 32 100.0 34 ................................ AGGTACGTCTGATGCTGCTATAAAACTCATAACT 1030513 32 100.0 34 ................................ TATAAACGATCTGTAACTGCTACCCGCATTAGCA 1030447 32 100.0 34 ................................ GTCGATGATTGGTGCGCCGTCACGTTTTTCATTG 1030381 32 100.0 34 ................................ TATTGCCAAAAGCAAATAGACAACTCGGCCAAGG 1030315 32 100.0 33 ................................ TCTATGCCTTGCACGTACTCACCAAACTCCATA 1030250 32 100.0 33 ................................ ATGATGAGGGGTTACACATTGTTGCGCATTTGT 1030185 32 100.0 34 ................................ TGGCACTTCTTTGGTTTTGAAGGTAGTAGCTCTA 1030119 32 96.9 34 .......................A........ CACATTACGACAGCTCAGCTAGTAAGTCTTTTTG 1030053 32 100.0 33 ................................ GACAACTTGTTTATGTGTAAGTTTATCGACGAT 1029988 32 100.0 34 ................................ CAGAAGTAGTATCTATATCCGTGCAAAGTCAGAA 1029922 32 100.0 33 ................................ ACGAGTTTAATCTTGTGTGCGTGCAAGACCGTC 1029857 32 96.9 34 .....................A.......... GATGAAGCGCTCGATTGCTGGAACTACTCATTAG 1029791 32 100.0 34 ................................ AAAGTAACTGGCTATGTAACCGTAAACGCGAGGC 1029725 32 90.6 0 ............A......T..........G. | ========== ====== ====== ====== ================================ =================================== ================== 35 32 99.6 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : TTTGTCATTAAAAAATAAGGAGTTTTATCAATGATGGTATTAGTAACATACGATGTATCATTTACTAGTGAAGATGGACAAAAGCGACTTCGACAATTGGCTAAAGTATGTCTAGATTATGGTATGCGTGTGCAGTATTCAGTATTTGAATGTGAGATAGACTCAACGCAATGGCTGATTTTTAAAGACAAACTTTTGTCTATTTATGATCCTAAAGTAGACAGTCTACGCTTCTATAAGCTTGGCAGAAACTGGCAAAACAAAGTTGAGCACCATGGTGCTAAAGTTGCCCTCGATATATTCAGAGATACCTTAATTTTATAATCGCTAGGGTGTAGTTCTCATGAAAACCCCAGTGATCTAGCGATTTTATAAGTTCTTTAAAAATATAGATAAATTTACTTTTTGACTAAGTATTGCAAGCGAACGGCTTTTGTTTGCATAAAGTTAGCGGGAAATAATGCATTATGTTAGTGTAAGCATGCCTTTGAAAGAAGGCA # Right flank : TGAGAATGACGTGATACCAATCCCAGCAATAACGTCGAACCTCCGCGTAGGAGCTGGTTTACCCAGCGATCTTTTTAAAACGCCGGCTGCGGATTACTCAGGGCTATGAGGGTTGTACCCTCAATAAGGTTTATCTTTAAAGAGGGTTAAGCGTGAAAAACGATGAAAATGTTCCAAATTACGTAAAGTTGGCAGAGTATTGAGTGTTTTATTGTTTTTTCATTGCAATTTATCGAGAGAAGCTTGTCTTTATATTTAACTAAATGTAATGTTTGGGTTAATTTCAAGGGAGCTAACGTAAAACAATGGTGGACAGATGCAAACGCCAGAGGAATATGAGGTAAGCCAGCGGATAGGTAGGTTAATACTTGGGTTAAAGCGTACTAGAGGTATGACCCGAGAAGATGTCTGTAAACGTTTAGGTATAGGCTCGCGCACGTTAGACAATTACTTAAACGGAGTGAGCTCATTTAAACTTGGGACATTGTTAAAGTTTGCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 1883427-1883108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081860.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1883426 35 97.1 37 .....T............................. TATATCTAGAATGGCTGTATTGGAATTGAAACTAAAC 1883354 35 100.0 35 ................................... CACAATGCAACTGTGAATAGAGATGCGTCGAATAG 1883284 35 100.0 35 ................................... GGTCATTCTTAAAGTCTTTGACAATTGATAAGACC 1883214 35 100.0 36 ................................... CATCAATAACTATCGTGTCCATTTTGAAATCGTCTA 1883143 35 85.7 0 ................T............G..GGT | T [1883110] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 96.6 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : TCGATTGCACTTTTGAGTAAGTCTGGCTGTGAGTCTGATAGCAGCTCGTTAAGATAGCCGGTGATTGCTTCTTGATTTAACTCCATCGTTTACTGACTCCTTTCGTAATGTTAATTGAGTTAGCAGAATAGGTAAGTTCTTGAGTAAGGTAAAGTGATATTCACAAAAGCTAATCACGCAAACAAATCTCACTTATTTTAAGTATAATTTTTAGGTATTTTTTAATATAAAGCAGTAGGTTATAAGTAAAAGGTAATACAGTTCTGGATGAACCTCTTTCCTGATATAGGGATTTTTTAAAAATACTATAACTATCATACTGTTAGCCTAAAAACCCACCCTTAGGTTCATCCATTTCAATTAAATCAATTAGTTAGCTTAACTTTTTACTTCCAAAATGGCTGTTTTTTGCTAATATCAACACAGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCACGCCAGTCAAGGTCTACAGAAGGTAGG # Right flank : TAGGTGCATTGTTTATCGCTACCGAGAAATGATGATTGGTGTTTAAGACGTTACACAGCGTTAAAAAGCCCTCGTGAGCACCCTAGATTAACAATAAAGCAAGACCTACAGGATAAACCCGTGAAGCTTGTTATTTGCAGGTCTTGATTTATCCGAGCAAAAAGATTTCCGTGGCATAGGGTGCGGAATTACAACCTAAAAGATCGCGGGGTGAACCCGCTCCTACCTGATATGGGCTTAGCAAAAAATGAAGCCAACAGAATAAACATGTGAAGCTTGTTATTTGTAGGTCGTGATTTATCACGACAAAGGATTTCCGCCGCCTAAGGTACGGCATTAAAACCAAAAAGATCGCGGGGTGAACCCGCTCCTACCAGATATGGGCTTAGCAGAAAATGAGGCTAACAAATAAATTTGTGAAGCTTGATATTTGTAGGTCGTGATTTATCACGAAAAAGATTTCCCCCGCTTAAGGTGCGGTATCTAAACCAAAAAGATCG # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1886739-1885919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081860.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1886738 35 97.1 43 ...................C............... AAGTCATCGCCTGCTTCAGCCTGTGCCTGCGCTTCAGTTTTAA 1886660 35 97.1 37 ...................C............... CGCTCGTAAAGGTTGTTGAGGTCAAGGATTGTTTTGG 1886588 35 97.1 34 ...................C............... AGAATATAAGTTAAATTTTTAAGTCTTTCTTTCA 1886519 35 97.1 35 ...................C............... CAATAGAGAAGACATGGGACTGCGACTCTCGTCCA 1886449 35 97.1 37 ...................C............... TTTGGGGGACTTTTCATAGCGTCCATCCTTTTTTTTT 1886377 35 100.0 35 ................................... TCTAAAACGTCACTTGTATTGTTTGATGATCTAAA 1886307 35 100.0 36 ................................... CTTAATAGAACTGCGCCTCCAGCAACACATAATAAG 1886236 35 100.0 36 ................................... TGAGTTAACTCGTCAACCTGCAGCTCGATACTTTGT 1886165 35 100.0 35 ................................... GATTTTACAGCTTTGTAATAATAAAAAACCCAGAT 1886095 35 100.0 37 ................................... TCGTATTTACTTTTGAAGATGTATCCACGTTTATCGC 1886023 35 97.1 35 ..........T........................ GCTTTGCAATATGCTCTCATTTAAAACTAGAACAC 1885953 34 91.4 0 .....................A........-..T. | C [1885926] ========== ====== ====== ====== =================================== =========================================== ================== 12 35 97.8 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : ATGGTTATGATGGCACAGCAAACATTCGCTTTTACTATTTAAACCACACTACCAGAACAAAATCCATGGACCTTGAAGGAAAGGCCGTTGCCTGCTTTCCTAGCGCACAAATTTTTTAACTTACTTTGAGAAACCCAATTCTTAACAAAGTATGTTCACGATTAAAAATCTTGTACCTTTTATTTTGGGGCGGAGCTTTTATCACTTTTTTTGAGGAACTTATATTAAGAAACAATGGGTTATAATCAAAAGTTGATACCATTCTGGATGAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTAAAAATATCATATAGTTAACCTAAAAAGCAGTTGCTAGGTTCATCCAATTCAATTAAATCAATTAGTTAGCTTAACTTTTTGCTTCCAAAACGGCTGTTTTTTGCTAAAATCAATACAGTTTTTTGGTTGACACTGGAGGTTCATCCAATTTGCCGCTACAGGCCGTGTCAGTCAAGGGCTACAGAAGGTAGG # Right flank : AAAAGCGAGCGAGGTGAACCCGCTCCTACTTGAGGGGTGGTTTTGGCAAAACGAAAGGTAGTTTTTACAGGTTGCTAAGCAGGTATGTTGTGTGTGATTGACTAAAACCACATTTTATGCCCCCAGCCAAATACGCAAACAAGCCCAAATATTAGTAAAGTAAGTGACAAGCGGCTGCGCTTAGGATGGCTTTGTTTTTGGTGTGTGACACTGGCTTTTCGCGCAATTTGTTTGTTAATACTTAGATTTGAATAATAGACAAAAGCTGAGGTCGTGAGCATCACCAAACCAATAAATACGGCATGCCAATCACTTGAGAAAAACCGAATTGGCTCACCATAATATAGCGTGGTCATTTCTACAAAGTTAGTGCCAAACACGCTGGCAATAAAAATAAGTGCGGTGCCTAACGTGGCGATGTTTTTTATTTTATTTTGATGTTGCTGTTGTTGTTCCCTGAGCTGTTTGGCTTCTTGCTCCATTTTTGCGTTATGTGTATG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : GTTGCAGCAACATTTGCCGCAGAGGCAGTAGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1900657-1900054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081860.1 Pseudoalteromonas piscicida strain WCPW15003 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1900656 35 100.0 33 ................................... AGAACATCTGTAGAGCAACACTCACAACCCTGT 1900588 35 100.0 36 ................................... GTGGTGGTTCTCCTCCTACATTATCTGGTCCATCAT 1900517 35 100.0 38 ................................... ATTTCATCATACTTTGTGATGGGGCAAAATGCATGATC 1900444 35 100.0 36 ................................... GCTATTAGCTTTTGAACATCAACCCTACAGTTTTCT 1900373 35 100.0 36 ................................... GTGGTGGTTCTCCTCCTACATTATCTGGTCCATCAT 1900302 35 100.0 38 ................................... ATTTCATCATACTTTGTGATGGGGCAAAATGCATGATC 1900229 35 100.0 36 ................................... GCTATTAGCTTTTGAACATCAACCCTACAGTTTTCT 1900158 35 100.0 34 ................................... AAATGTAATTCTGAGTATCCCACACACGCTACAA 1900089 35 71.4 0 ...............A..C..A.A.T....CCTTG | A [1900057] ========== ====== ====== ====== =================================== ====================================== ================== 9 35 96.8 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : CTTTGCCTGTCGATAGATATGCGCTCAACAGGAATTATTTGTAGGTCGTGATTTATCACGACAAATGATTTCCGCCGCTTTTTCAGCGGCTTAAAATGCGGCATTAGAGCCAAAAAGATCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTAAAAAATTTTGTACCTTTTATTTTAGGGGGCGTTTTTATAACATTTTTTTAGTGATTTATATTAAGAACCAATGGGTTATAACCAAAAGTTGATACCATTCTGGATGAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTAAAAATATCATATAGTTAACCTAAAAAGCAGTTGCTAGGTTCATCCAATTCAATTAAATCAATTAGTTAGCTTAACTTTTTGCTTCCAAAACGGCTGTTTTTTGCTAAAATTCATAAAGTTTCTTGATTGACGCTGGAGGTTCATCCAATTTGCCGCTACAGGCCTTGTCAGTCAAGGGCTACAGAAGGTAGG # Right flank : AAAAGCTAGCGGGTTAGTTCGCGCTACTCAATAGCGCAGTGAGCTTTTATCAGTGAATTTACGACTTTGAGCAAGTAGCAAAACAGTACACAGCCAACATTTAGTCAAAATCTCTTCCTCAGTGCACGAATAGCACGTAAAGATAAAATGAAAATAAAGTGAATTATTTGATTACAAAGCGTTTCAAATATATATAAATTACTTTATGCTGATAAATAAGGATCGCTTCATCACACAAGGACATCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGCCTGCACGATATGGTTGCCGCCAACGCTTTACTTGCTAAGACTATTCGCTACGATCTGGTTGTCGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGGCAACGACTCAGACGCACTCGCTGAACTTGGGATCCTAAGCCGCGATGGTGGTCATTTTTATGCGCTATTTTCAAGTTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //