Array 1 16788-16371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMM010000022.1 Clostridioides sp. ES-S-0006-03 CD-ESS000603-ESS000603-EN-USA-2017-093-JS_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 16787 29 100.0 37 ............................. AAAGGATTTAATGAGGTTCAAATAACAACTAGTGATT 16721 29 96.6 37 ...C......................... TTAGCTGTGCTATTCATAGTACTCATAATTTCATTAA 16655 29 100.0 36 ............................. AAAGAAGAACGAATAAAAATTGAAACTAATGTAAGT 16590 29 96.6 37 ...............A............. GTCGGACTTATTATCATAGATATCCCTTTTGCCAAAA 16524 29 96.6 35 ............................A ATTGTTTTAAATTGATTAAGTACATCTGTTGATTT 16460 27 82.8 33 A.................A-.-......T TAAATTAAAAAATATATTTGAGTTAGAGAGGTA C [16436] 16399 28 72.4 0 .....T....CGT...T...A.-.....A | G [16391] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 92.1 36 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATACTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTACAAAAGAAGAAAAAGAGAAAAATCGAGAAGAAACTGCAAAGTATTATGAAAGACTTAAAAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAATTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGAAATGGTCTTATTAAGGCAGGTATGGCTTTAAGCTTTACTGATGCAAAGGAACAAGCAAAAATAGGATACCTTAGTGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATACCAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATAGCAATACAGACACTTACTTAAATAGTAGGTGTTTTTTTATATGGAATTTTGAGGAAGGGAGGGAAAAATATGTCCTTAGAATTAGGAACAGCAGTAGGTTATCTAGATTTAGATGGAGGGAAGTTTTTTAAAGCTCTTGC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 351509-353098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGMM010000004.1 Clostridioides sp. ES-S-0006-03 CD-ESS000603-ESS000603-EN-USA-2017-093-JS_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 351509 29 100.0 37 ............................. ATGGAAATGTAAGAGGGGGAGTATTAGATGATTTCAA 351575 29 100.0 35 ............................. ATAGAAGTTAACCCTATTCTAAAACGAATATTAAA 351639 29 100.0 36 ............................. ACTTCTGATTTGGTGACTGACTCCATGTCAAGTCTC 351704 29 100.0 36 ............................. AGGAGCATCAAAATCAGATGTAGAGAAAAAATTTCC 351769 29 100.0 36 ............................. AAACTACTGACAACATAAAAAGACCTCTAAACGTTG 351834 29 100.0 36 ............................. TCGTTTGCGAGGAAGTTTATCATGTTAAAGTTGTGC 351899 29 100.0 37 ............................. GTTCCACCAAAACCGGAACAGGTAGTCAATCCGGAGC 351965 29 100.0 37 ............................. ATTATTAAAGTGTTGGAAATTAAAAAACGCTCTTTTG 352031 29 100.0 36 ............................. TAGCTTGCAACATTTTCTCATAATCACTTATTTCTC 352096 29 100.0 37 ............................. ACAGCAAAAAAAGGTTTAAAAAAATCAGAGAATAAGG 352162 29 100.0 35 ............................. ACGAGTCAAAAAAAGATGAAGCTAAAAATGTAATG 352226 29 100.0 36 ............................. GCTAATAAATATTTTAATAAATTAGGAGAGCATAAG 352291 29 100.0 35 ............................. CCCTGCATACGCCCAATTAATCTTTGAAATTTCAA 352355 29 100.0 36 ............................. AAAATGCCGACATACTGGGCAAAGGAAGTTATCCTA 352420 29 100.0 36 ............................. TTAATATCACTCAACGCACGTGTACTTTCTTCTTGT 352485 29 100.0 37 ............................. TGTATAGAGTGTAGATATTCAAGCAAATGTTTTGGAG 352551 29 100.0 36 ............................. TCACTTATATACAGTTTAAATCCATTTATAAGCTCA 352616 29 100.0 36 ............................. TTGATATACTTTATAGTAACTTACATCTTTAACGTC 352681 29 100.0 37 ............................. TAATTAAATCCTTTTAAATCCGTTCCTCCGGAATAAG 352747 29 100.0 37 ............................. TTATGTTTACTGTAATTATATCTGTAATATCTTTGTT 352813 29 100.0 34 ............................. GGGGAAAATCTATCCAGGCTTTGCTATTTACAAG 352876 29 100.0 36 ............................. TGTCCCCTTCTGTATTAAAAGAATAATACATGACTT 352941 29 100.0 35 ............................. AAGGATTATTTTAATTATATAGTTTTTTTAGATGA 353005 29 100.0 36 ............................. TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 353070 29 82.8 0 ................A.AA...C....T | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.3 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTGATAATTATTCTCAATTGCACTGCTGTTCGCTCACTGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTACTCAATTAGACCTATTTTGGG # Right flank : TAAAACATACATATTCTATAAATAATAATAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATATGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAAATAACTACAATACTGTCAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATGCACTTAAAGAATATAAAAATCTAAGTTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATAGCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGGATTTAAAGAATATATAATGGAATATAGTAAACAACTTTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //