Array 1 16369-16930 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGN01000015.1 Staphylococcus simulans strain SNUC 1334 contig015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16369 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 16435 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 16501 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 16567 36 100.0 29 .................................... TATAACCGATATGCATAGTTGCACGTAAT 16632 36 100.0 30 .................................... TTTCAGCAACAAAGAATATGCACTAAGTGT 16698 36 100.0 30 .................................... TGCGTGGTATGCGTTACGGTCGTAGTCGTC 16764 36 100.0 29 .................................... AGCAGTATTAGTTAGATTAGACGGTATTG 16829 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 16895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGN01000039.1 Staphylococcus simulans strain SNUC 1334 contig039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 78 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 144 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 209 36 100.0 30 .................................... TTATTGTAATGATGAAATTGAATCAGTTGT 275 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 341 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 406 36 100.0 29 .................................... CTTTACGTGCTTTTCTCCACGCACACATC 471 36 100.0 29 .................................... ACCACAATTTCTAGTGTATATACGCCTTT 536 36 100.0 29 .................................... ATTGTTCTGATCGCGTTAGACATTACTAG 601 36 100.0 29 .................................... GCATATGAAATCAAGTTACTAGGAGTAAA 666 36 100.0 30 .................................... CTTTAGCAATTTCAGATGCATAACCACGTG 732 36 100.0 29 .................................... TGCATTAGCAATGTTTGGTGGTTCATTAA 797 36 100.0 29 .................................... CGCAAAAAAACCATGCGTTGACGACCGCA 862 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 927 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.3 29 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : GGGCAGAAAAAG # Right flank : AAGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGN01000099.1 Staphylococcus simulans strain SNUC 1334 contig099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28 36 91.7 29 .......G......G....................G TTGGATACAGTCGGTATAATAATTGGCGT T [58] 94 36 100.0 29 .................................... AACAAAATTAAACAGGTAAAAGAAAAATA 159 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 224 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 290 36 100.0 29 .................................... CAATTTAATTATAGAACAATGCAGACAAA 355 36 88.9 30 .......G......G................T...A GTTGGATACAGTCGGTATAATAATTGGCGT 421 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : ATTTAATTATAGAACAATGCAGACAAAG # Right flank : A # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 212-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGN01000082.1 Staphylococcus simulans strain SNUC 1334 contig082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 211 36 100.0 29 .................................... CGCAAATGGTGCGACATAGAAACGTATGG 146 36 100.0 29 .................................... AACAGAATTACACAGGTAAAAGAAAAATA 81 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 3 36 100.0 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : CTGTTTAATAAATAATAAAACGACGATTAAGTTTTAGAATTGTGAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //