Array 1 372872-374580 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIYJ01000006.1 Taylorella equigenitalis strain ERC_G2224 CGen2P1_c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 372872 29 96.6 31 ............................T ATTCCCCATTCCATCCGTTGAAAATTTGGCG 372932 29 96.6 31 ............................C AATTGCCCCTGCTTGAATATGCCCTGCGGTT 372992 29 100.0 31 ............................. TTTTTGGGTGCGAAACCATTTACCGATTTTG 373052 29 96.6 31 ............................T CAATCGTGAAAAGGTGCGATATTTTTTTCCA 373112 29 96.6 31 ............................G TAAGTTGCAAATAAGGATTCATTGAATACAT 373172 29 96.6 31 ............................T GTAGAGGCACTAATCCCCACATTGGCAGTAT 373232 29 100.0 31 ............................. ACAGTGTAGAGTCTTTGGACGGTGCGAGTAG 373292 29 96.6 31 ............................T TGTGAGCCTTAATACATCTTTACGAGATATA 373352 29 96.6 31 ............................G AAATAATGCCGTATGAAACAAATTTCCCCAC 373412 29 96.6 31 ............................G ATCTATCGTTATCCCTTTGTTTGCCCTTAGA 373472 29 96.6 31 ............................T TAAAAACGTAAAACTACCTATACAACGTATG 373532 29 100.0 31 ............................. TATTCGTCTGAATTGAAGTATATACGTTTTA 373592 29 100.0 31 ............................. ATACTTGCGTGCTTGATAACGGTAGGTTGTC 373652 29 100.0 31 ............................. TTTCGGAAGGGTTACATTGTTAAGTCTTGGG 373712 29 96.6 31 ............................T CGATACCAACATATACACAGAAGAACAAAAA 373772 29 96.6 31 ............................C ATTATGGCACTAGCCCTTATTGTTGGGGTAA 373832 29 96.6 31 ............................C CCAACCGCGCTGCAAAAGATAGAGAATTGAC 373892 29 100.0 31 ............................. GCAGGATGTAAGAATTGCAGAGCTTACTATA 373952 29 100.0 31 ............................. TATTTAAAAAGTAAAGGTTTTGATGAGGCGA 374012 29 96.6 31 ............................G TGTTGTTATCAACTCTAACAACATATGGCTC 374072 29 100.0 31 ............................. AACAGCTGTTAATAGACCGTATACCCCGTTT 374132 29 93.1 31 ........A...................T TCAAACAGGGTCAGTAACAGCACAGAAACTA 374192 29 96.6 31 ............................C TACGCATACCAAGCGAAAATATGAAAGGTGC 374252 29 96.6 31 ............................G TTAGTTGCAAGTTTAGATATGTTTCCTGGGA 374312 29 100.0 31 ............................. AGTGAAAGAATGAAGGGAATAAAACATCATA 374372 29 100.0 31 ............................. TATCGCTCATCACATAAGGGCATCCAGTAGA 374432 29 93.1 31 ...........C................T CTACTCAAGAAAACCCGAAAAGCACTCTTAA 374492 29 96.6 31 ...........C................. TTCAATTATCCCGTCAATATCGATTCGGTTA 374552 29 93.1 0 ...........C................T | ========== ====== ====== ====== ============================= =============================== ================== 29 29 97.4 31 GTTAACTACCGTATAGGTAGTTTAGAAAA # Left flank : GACTATATACATATTACTAATGTTAAGTCTGTCCCTAAAAATATTCAGGGCTACGCAAGCTTTTTTAGACATCACGTAAAATCAAATCCATTTACTGTTGCGAAGAGACTTTGCCTCAGAAAAAATAAAGGAAACGTTAATCTTGATGATTTAAAAGACATAAACAAATTAGCCTTACAAATCAAAATTGAACATACCAATCTACCTTATGTTTGCCTATCAAGTCATTCTAGCAAGCACCGTTTTAGGTTATTCATCGATAGGGAATTAGTTCCCCTTTCTGTTGAAGGGAAATTTAATTCTTATGGTTTAGCCGTTAAATCTAACCTGGTTCATGGGACTAATTCAATGGGAACAGTTCCCTTATTTTGAAGAATGTTTTTTAGATCTTTAAAAACCAGTTAATAATCAATAACATACAAAAATGTCAAAAATTTTGGTCTTTAGACTTAAATTAGTTAATATCTAATTAAATCAATGTTTTGAGACTTTTTTGTACA # Right flank : TCCTAATTAGTTTATCACCCCCCCCTCCCAAACATTTAAAATCAGTAAAGCCACGTATACAAGGCACAATACAATCCCAAGGCACAAAACCAATCACACCTCTATCATTACTACACCCTTCAGTTACAATATCTCACAAATTTATTCAAATAAAAATAAAAACAGGAGCTACATCTTGATATCAGCACTGATCATAGCCGCTATTGTCGTTTCTATAGCTATAGGTTATATCTTCAAAATAAATATAGGTCTTCTTGCAATATCATTTGCTTACATAATTGGCACATTCATACTTGATTTAAAACCATCTCAAATCGTAGCACTGTGGCCCTTGAAATTATTTTTCGTAATCATGGCTGTATCGCTTTTTTATAATTTTGCGACAGTAAATGGCACACTAGAAAAGCTAGCAGATAACTTGATATACAGGTCCAAGAATTATCCTTATCTTCTGACATTCGCCGTGTTTTTAGCCTCTACTCTAATAGCAACTATGGGTG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGTATAGGTAGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //