Array 1 2940-3456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2940 29 100.0 32 ............................. CGGAACGCGACATCCGCAGTTTACTGGACTCC 3001 29 100.0 32 ............................. GTCGACACCAGCGAGTCGAGCCCGTCGAACTG 3062 29 100.0 32 ............................. TGTGCGATCTCGTCGGGGACCGGCGGCCGGAA 3123 29 100.0 32 ............................. GTGATCCGGTACCCGTTGGTTGGGAAGTCCGG 3184 29 100.0 32 ............................. TACCGGAGCGGTACCCCCTGCGACGAGCTGAG 3245 29 100.0 32 ............................. GCGCCGTCCCCATCGCTCGCTACATGGCTGTA 3306 29 100.0 32 ............................. GGGCAGATCCAGCCCGAGCACGTGGAGATCCT 3367 29 93.1 31 ......................GC..... AACTTCGACGTCGACCCTGGCCCAAGCTGCT 3427 29 72.4 0 T.C..........GG.......G.G.T.T | C [3438] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 CTGCTCCCCGCGCATGCGGGGATGAACCC # Left flank : GAGATCAGGACTTTCAGGGGAAGGTTGCAGGCCGGGAAGGACCCGGTTTGGGGCGGGGGAGGAGGAGGTTCCGGATGATCGATTAACGCGGCTGGGTGTGCCTTCTCGCCTTGTTGAGCGGCCTCCGGTTGCGGAGAGCAGGAGCTGCTTCGTCATGTCCCGTCGCCTGAGGCAACGCCTGGCTCCAACGGGGGACGGAATGGGGCTGCTGGTGCCGCCCGTCAGTCGGTCCGTGACGCGGAGCGGCGGAGTCGTAGTGAGGCAATTTGACCGAACGGTGTGCGGGAGCTCGGTGCTTGTGATGCGAGCCAATCCATGAGGGTGCAGACGAGCGGGACACTCTCATTCCCGCTCTGCGGCATGGCAGCATCACTGGCGTCCAGCGCGCCGACCCGGCACACAGGAGATTCGCAGAAGCCGGAGCTATGTCGCATTTGCCGGATTTGACGAAAGTGGTCGAGAGCGGCGGATGACGCGCATAAAATCCCAGCTCAGGAAGT # Right flank : TCCGCGGCGAGGTCGTTGATGCAGCGTGTGCCCGTGTCCGTCCCAGCGGCGAGCCCGTGATTTTGGGCGAGGGGTTCAGCGGTTGTCCCGGGCACGGGAGTGGGGCGCCACGCCGTGAACGCGGTTGGGGCCCGCGGGCGTTTCCGCGTCAATCGTGTTGGTGGTGGGGGAGGGGAGAAGGTTCGTGTGCCTTATTCGTCGGCGCGGGGTTTTGCGGTGCCTTCCCGTCCCTGCGGCCATGGGGGACCGGGCGGGAGGCGTTGGCCGCGCGTCGTCGGCCGTCTGGGGGTTGAGGAAGCGGCGGGCTGCCGCGAGGTCGGCGACCGTGGCCAGCGTTGTCCACTGGTAGCCGTCCCATTCCAGGATGAGGCGAGGGCGTTGGGGTGGACGTGGGCTCCCTGCGCCCCTGGGACGAGGGTGACGGCCTTGCGTTCGCCGACGGGGCGGAGTCGCTTTGCGCGGCGGGCCGCCCATCGGTCCAGGGGGTCGTCCATGGTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52117-52938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52117 29 100.0 32 ............................. AAGAGGCGGGCACCCATCCCGACGAGTGAACC 52178 29 100.0 32 ............................. TCGCGCAGCGACTCGATCGGAGAGGAGCCGAC 52239 29 100.0 32 ............................. CAGCTCCTCGCGCTCGCCGCGGAGGCGGAACG 52300 29 100.0 32 ............................. CACCGGCCGGCCCCGCAGGGCAGCAAGCGGCA 52361 29 100.0 32 ............................. CACCGGCCGGCCCCGCAGGGCAGCAAGCGGCA 52422 29 100.0 32 ............................. GGCCACTCCGGCGCGAACACGGTTGGATTCGA 52483 29 100.0 32 ............................. GGCCACTCCGGCGCGAACACGGTTGGATTCGA 52544 29 100.0 32 ............................. GTGGCCGAGGGCGTGACGGTGCTCCTGGACCA 52605 29 100.0 32 ............................. CGTCACAGTGATCCGCACTGGGCGGCTCCCTT 52666 29 93.1 32 ...........G.A............... GTCACCACCATCGAGGTCGACCCCGGGGTCGC 52727 29 93.1 32 ...........G.A............... GGGCAGGCGGAGTCGGCGTCGAGGTCGAGGAG 52788 29 93.1 32 ...........G.A............... CCGAGCCACCGCGCCAACTCCCCCGCCCGCAA 52849 29 89.7 32 ........T..G.A............... GCGATCAAGGCGTTCCTCGGGTCGAGCCGGTC 52910 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TCACGAAAGCGCCACCTCGTTCCCATGGCCCGCTACAGCTCCGGCTTGGGTGCTGTCTCGCCCGCCCTGTGATCCGCAGGCTCCGCCACCAGGCATGCCGAGGGAGTCTTGCCCGCCTGGCCCCTGCGGGCGAAGCGCCCGCCGCGTCGGCCACGGGCACGCTCGACAACAGCTCCGTACACGCCGGATTCCGCACCGGGGCCGGCTGGCAGGGTCTTCCAGGACAGGTGCCTCCAGGTCGCGCGGAACGCTGTGATCCACGGGCCGCCGCGCGGTGGCTACAGGGGTTCCAATCGGCCGCCCGGGCCGTCTGAGCCAGCGAAGGGCGAGGCGGAACCCTGAGCGCGCGGGGGCACGGGCCAGCTATGAGCCGATGCCACCCCGGACGCCAGCAGCCGTCCAGCAAAATATGGGCTTTAGGCGTTATAGGTCGTATGCGCGTATCTCTGGAAGTGGTTCAGAGCAAGGTCTAACTGGCCTAAAGTGGCAGGTCATTAAGA # Right flank : TGCGGCACGAGCGGTGACCGGATGGGTTTCGGCGGATCGTCCCGCAAGGTGTCCGAAAAGGGCCCCATGATCGTTCTCAGGTTTCCCTGTGTCAGCCTTAGGATTTCGATCTTCAGTTTGAGTGGATCCGGTGAGAGGACGCAGCGTGCCGGGGGAAACGTTCGTGCGCCGACTCGATCGGGTTCGTGCCGGCGCGGGTAGCGTCATCAGGCGGCGCACCGTCCGCAAGGAGGCCCGTCGCGCGCTCCGCGACATGCCGGTGCCCCGTCCCTTCAGTACGCCCGCGCTGATTGCGGGCATCGAGGCTGAACGAGGGCGGCGGATCGAGCTGGTGCCCGCTCCGGACCGTCTCCTCGGCCAGAGTGACATCTGCGGCCTGTGGATCCGGCACGAGGGCCTTCACCTGGATCTGATCTTCATCCCGGAGAGCATTTCGGGGTACCACCGGCAACGGATCCTCTTCCACGAGTTGGCCCATCTGTGGTGTGACAACCCGAGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 59618-59890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59618 29 100.0 32 ............................. GCGTCTCGGCCCAACGCCCCCTGACGGATGCG 59679 29 100.0 32 ............................. CGCTTTCCCATGCGTCCTCCCAGGTGATGCGA 59740 29 100.0 32 ............................. GGAGTACCGGGTCAGGGCCGTATTCGGACGAG 59801 29 100.0 32 ............................. CCGCCCGGCAACCACCGGCCCCGGGAGGGGGA 59862 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GATTTCGGGCTCGTCGCGCACTAGAAGGTCGTGCTCCTTCTCCTCGGCGACCCTGGCGAGATGGTCCTTCAGGGACATGCCCGCGGTCTGCGGATTCCTTACCCGCTGGCTCTTCGAGATCTCGCCCGGAGTCTTCATCAGCGGACCGTCTGCCCGCGTCAGGGCGGCACTGTGGGAGGAGGTGCGGCGATACGCGGGCATGGGGCGCGCCCTTCTCGCGTACACCACCGACAATGAACAGGGCTTCGCCTTCGAGACCCACGACGACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTTGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCATCGAAGTGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGCCGGAATCTCGGGAAGTGGTTCAAAGCGAGCCGGATCCTGTAGAAACACCCCATTCGCCGCATATGGGAGACCGACCCCGAGAG # Right flank : CGAGCTGCGAGACGGCTGGCTCGGCACCGTCAACGCCGACGGCAAGCTCATCGGCCGGGCTCGGATTGATGACGACGTCGTCGGACTCCAGCAACTACTCGACCTGTTATCCGAGCACGGGGACAGCCTGAAAGAGCCAATACCGGTAGCGATCGAGACCTCCCGCGGCCTGTTGGTGGCCGCCTACGTGCGACTGGCAGGCCGGTCTAGGCGATCAACCCGATGGCCACGGCCCGCTACCGCGAGCGCCGCACCCTGGTGCGGACGAAGTCGGACCACCTCGACGCGATGGTGCTGGCCAACATCCTGCGCACCGACGCCGATGCCCGCCGGCTGCTGCCCATCGACAGCGAGCTCGCCCAGGCCGTCGCTGTCCTCGCCCGGGCCCAGCAAGAAGCCGTCTCGGATCGCAACCAGGCCGGCAACAAGCTCCGCTTCCATTGCAGTACTAGGGTCGATGAGCGACGGGCCCGGATCGGTTGGCGTTCCCTCCGTGAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 68593-68927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68593 29 100.0 32 ............................. ATCAGGCTGCGGAGCTTTTCGCGGGCCGATTC 68654 29 100.0 33 ............................. CGTGCTGACCTCCAGCCTGGCGACAGGATCACG 68716 29 100.0 32 ............................. GCCGCGGTCAAGGCCATCGCCCGCTCGCGTAT 68777 29 100.0 32 ............................. GCCGCGGTCAAGGCCATCGCCCGCTCGCGTAT 68838 29 100.0 32 ............................. CTGGAGAAGGCCGTCCCTCACATGGCCTGGAC 68899 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGCCGACGCTGGCCAGACTGGCCAGCGCACTGATGGGATTGCCGGATCTCGTAGCTGGCACAGCCTGTACCGTGTCGAACATGCCGGTGACTGTGGGTTGCTGGAAGTGGAGCCGGGTGACCTGGGGCAGACCGGGAGCCCGGCTCGGCGCATTTCCGGGCTCTTTACGCAGTCACCCGCGCCCGACATTTCGCACTCGGGCCGACCGGCAGGGTCTTCCAGGGCAGGTGCCTCCAGGTCGCGCGGAACGCCGTGATCCACGGGCCGCCGCGCGGTGGCTACAGGGCGTTCGAATCGGCCGTCTGGGCCGTCTGAGTCGGTGAAGGGCGACGTGCAGCCTGAGCGCGCGGGGGCACGGGCCAGCTATGAGCTGATGCCACCGCGGAGGCCAGCAGCCATCCAGTAAAATATGGGATTTAGGTGTTATGAGTCGTATGTGCGTATCTCTAGAAGTGGTTCAGAACAAGGCGCAACTGGCATAAAGTGGCAGGTCAATAAGA # Right flank : CTCTGGCTTTTCGACTTTGTGGTCCGCTGACGACTCCGAGAGACGAAGCCCGGAGGTTGCGGCACCTGACGTGCTCTGACAGACCCTGCCGTGCTACCTCCGCACGCGCCGTCGTCACCGTGCATGTCAGCCGTGCCGGGGCGTCGATCACCGCGGTCACCACTGACTGCTGGCGCCATCGTCGGATCCGCGATCTGCCTCGACTGATCTCAGCGGTACAGATACCCTGCGCGTCTGGTCCCTCTCCGAGGCGGCGCCGGGCCGATATGGAGCCGGGCTCCGTACGCGGCGCGGGCCGCTGCCGGGCAGGCTCCTCGGCGGCGGTACGGCCACGCACAGAGCGCAGTCTTGCAGCACCCTCAGGCGAGAGCTTCGCCGAGCAGCCGGTGCGGGGCGCCGCCCAGGTGCCGGTGGAGTAGCTGGGCCCGGGAGTACAACAGGCCGCCCCAATAGGTAGGCGGCAGTCGGTCGTACACGGCGGCTGCCATCTTGGCGGCCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 84983-83179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 84982 29 100.0 32 ............................. GGTGCGCCTTTTTCAAGCAACCTGTTCGCCTC 84921 29 100.0 32 ............................. CATGACGCCGACGATCTGCGCCTGGTGCCGGC 84860 29 100.0 39 ............................. AGCGCGGTTGGCACCACATGGTCTGGGTCACGGGGTTAG 84792 29 100.0 32 ............................. GACCTGACCTTGACTGAGATGGTCCGCGTCCA 84731 29 100.0 32 ............................. GAGCATGAGCGGTGGGCCACGTACGCGGATGT 84670 29 100.0 32 ............................. GGGAGCGGCTCCGCGCGGCGACGCGTCCGAAG 84609 29 100.0 32 ............................. CTCCTGCTCGTCGGCCCCACCGGCACCGGCAA 84548 29 100.0 32 ............................. TGTTCATCAGGCCGACGGCGCGGGCCGAGTCG 84487 29 100.0 32 ............................. CGTCACCCTCCGGATCGCCCGCACCAGCCCCG 84426 29 100.0 32 ............................. TTCACCGGCCACCGCCAGTGCGCTCGTCGTAG 84365 29 100.0 32 ............................. GTCACGGACCTCATCAAGAACCTCGAAGGCGA 84304 29 100.0 32 ............................. ATGGCGCGCACGATGCACACCAACGGTGGCTA 84243 29 100.0 32 ............................. AGATACGCGGCGACGGGCCTGGAAGTCTCCGG 84182 29 100.0 33 ............................. CGCGAAGTACACCGTAGAGATGTCCGGCGCTGA 84120 29 100.0 32 ............................. TCCCAGCGTCATCACGTCCGCAGCGACCACGG 84059 29 100.0 31 ............................. AGGCCCGGTGCAAGGCCGGGTGGACCGACGA 83999 29 100.0 32 ............................. CTCCCCGCCCGAGACCCCAACGGCGGACCCGA C [83998] 83937 29 100.0 32 ............................. CAGTCCAGCGCGAATTGCTGGATGCTGAGGTA 83876 29 100.0 32 ............................. TGTCTCCGCAGCAGACCGTTGTAGTGAGCTTC 83815 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 83754 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 83693 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 83632 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 83571 29 100.0 31 ............................. AGCCGATTTCGGCGCCCTTCTCACTATCGGA 83511 29 100.0 31 ............................. GGCGTCATCGAGCCTCGGAGCTGGACAACGA 83451 29 96.6 32 ............................A TAGGGGTTAGTTTGGCGGTTTGGGCAGGGGCC 83390 29 100.0 32 ............................. GTCCCTGTCGATCGGCATGATCACGCCCCTGA 83329 29 100.0 32 ............................. CGGTAGAACGCCTTGCTGGCCAGGGCCATCGA 83268 29 93.1 32 ..............T.......C...... TCAACGATCTCACCGCGGAAGTCCGGGCCAAG 83207 29 93.1 0 ........T.....T.............. | ========== ====== ====== ====== ============================= ======================================= ================== 30 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : ATCCCACCCGAAGCGGCTAGCCCCGTGGCTGAGCTGCTCCTCTGGAGCCACCAAGTACTGCTCTCGGGCCGGCGGGCCCGTGTGGGGCTTCGCCCGTCCTGTCACGCGCGCCTGATCTGCAGGGACCGCAGCCGCTCGGCGATGGCGTACGAGTCCAGGCTCAGGGCGCGGATGTCGTTGACCAGGTCGCGCCACGGCTCGTACGCGGTGTCGACGAGTGTGCCCGCGGCCTCCAGATAGGCGCGCAGGATCTCCTCCTGGCGGTCCAGGAGCCATCGGTAGTCGACGAGCAGTTCCACTGGGGTCTCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGATCGCGTCGCTCTACGTCCGCCGAGCCGCCAGGGCTGGAGCAAGGCAGCGAAGCGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGTCGGAGTCTCGGGAAGTGGTTCAAAGTGAGCCGGATCCTGTAGAAACGCGCAGGTCACGAAGA # Right flank : TGTAACGAGCTGAAATAACGCTCTGTCACAGATGCACCGCGCCGCCGGCACTGCCCGCGCCGCGGAGGACGCCCTCCCGCCGGTAAGCACTCCCTGATCCTGCGGCTCCTTATGGCGGAAGTCGAGCAGGCCTGAGCCTCTGCTCCGAGTCGGGCGGCTTCTGTCCAAGCCGCCGCCCTCACAGTGCCACCAGAGGCCGTTGCGCGAGCATGACCAGTCAGTCTGCGCAGACCCGCACGGGTGCGAGGCGCAGGTTCGATGGCGCCCTGGTCGAAGGCCGTCCGCGCTGCCGCGGCCGGTGTCGGAGGGGCGGGATACTCTCCGGCCATGGATCTGCCCTACAGCACCAGGCCCTCTACGGAGGAGATCATCGCAGCTGTGCCCGGACTCGCGCCGTACCCCCGGGCAGCCGTGGTGCTGGCCCCCGAGCGTGGGGAGCCGACGGTTCACCAGAGCTCGGTGGGTGGACCGTTGCTCTGGCCGGCGGATGAGCCTTGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 92810-92048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92809 29 100.0 32 ............................. CAGGTGGCGAAATGGGCGAGGCTGACGTCAGC 92748 29 100.0 32 ............................. TGCGCCTCGCCGCAAACCTCACGCAGCAGGAC 92687 29 100.0 32 ............................. GACGCTGATCGGGCGGCCCGGCGGCAGGAGGA 92626 29 100.0 33 ............................. CCGGGCGGTTCTGGGCTCCGCACCGATCTACGC 92564 29 100.0 32 ............................. GTCTTGACCGGCGCGGTCTTCGCCGAGATGGC 92503 29 100.0 32 ............................. GCTGCCCTCGGTCTCTGGCTGAGGTGCGGCTC 92442 29 100.0 32 ............................. TGCGGGGATGCTGCGGGCTGCAGCTGCTCGAT 92381 29 100.0 32 ............................. GCCACCTGGCCCACCTCGTGGCATGCGGCGTG 92320 29 100.0 31 ............................. GTGCCGGTCGGCGGGGCGGATGACGCCTGCG 92260 29 100.0 32 ............................. GCCCAGCTGGAGTCCATCGCTGGGAAGATGTC 92199 29 100.0 32 ............................. GGGGCCAGGTCCCCGCGCAGCTTCTCAGCGTT 92138 29 96.6 33 .G........................... TACAAGCGCCTGATAGAGGACGCGGGGCGGACC 92076 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCTCGAGCCCGGGGAGCAGGTTGAGGTGACGACCATCGTGAACCTGAGGTCCGTCACCGTGCGCCGGACGGCAGCGTTCGCAGCAGCCTCGGCCATCCTGAGCGGCGGTGGAATGGCCGTGGTCCCGGTGCCGACCCCCATGTACCTGGCGATGACCGACCGGCGCATCTTCATCTTCCGAGCAAACCCGACGTTCGCCCGGCCGGAAGAACACCTGATGACGATCCCGCGCGCCGGTCTCGTCCGCTCGGAGATCAAGGAGCGGTTGCTCAACTCGTCCTTCATGATCTCCTCGGCTGATAGTGAGCAAGGCCTGAAAATCATCTTCCCGCTGGTAAGCCGCAAGGAGCGGCACGTCATAGCGGCCGCCCTGCCTCTGGCCAACTGACCGCCCAGGACAGGGCGGGAGCGCAGGCAGATCCGATTGATACCCTATGTCGGAATTTTGGGAAGTGGTTCAAAGTGAGCTGGATCCCGTAGAAACTCGCAGGTCACGAAGA # Right flank : TCCTTGAGGCCCATGCCGGCCTCCTTGCAGAACCTATGGCCCGCTCCAAGGCCTTCCTGCTGTGGAAGACGCGGCAGCACGTCGCTTCGATAGGTCAAGTACGTCGGGCCGGCGGGAGACTTCGATACGGTCAGGCTTCCCGCCGGCGCACGCGCGGCACTTTCTCAGGCGGCGCTGGAACGAGGCGGCCAGTGCCTGGCAGTGGCCTGCGCGATCAGTACCGCGGCGCGCTCGACCTCGGCGGCCGTGGTGGTGCGGCCGATGCCCAGGCGCAGGGTGCGGCGGGCCTGGGTGCGGGTGAGGCCGATGGCGGTGAGGACGTGGGAGGGTTCGCCGGTTCCCGTGTTGCAGGCGGATCCGGTGGCCGCGGCGATGTCCGGGAGGCGGTCGAGGACGTCTGCGGCTTCGGCGTCCGGGAGGGTGAGGCTGAGGGAGCCGGGGATCCGGCGGCTGGGGTGCCCGTTGACGGTGGCGCCGGGGAGCGCGTCGAGGAGCCTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 94100-93954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 94099 25 100.0 36 ......................... CCCCAAGGTCAGCTTCGCTGAGGTCGGCGGCGCTAT 94038 25 100.0 35 ......................... CCCCTGCCGGCCCCGCCCCCACAGCACGCCGACAT 93978 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ==================================== ================== 3 25 100.0 36 CTGCTCCCCGCGCACGCGGGGATGA # Left flank : GAAGAGATCCTCGAGGAGGCAGGACGCCTGCTCGCCGGATCCTGGCCGCCACTGGGCTGATCTCACCGGCGGCAGACGAGGATGCCGTCAAGGCAAGTGATCTCGTACGCGCTATTGCGGGCGATGTCGTCGGCGACGAGGCTGCGGGCCCGGTCGATGGTCGCGTCGAAGGGCACGTCGTGCTGGTCTGCCCAGGCGCGGTACGAGGCCATGTGGGCGATGACGGGCTCGGGGTCGCGGACCGTGATGGTCCCCGGCAGTTCGGCGACCTCCACCCGTCCGAACTCCTCGCCGAGGAAGGCCGGGGCCTTCTCCAAGGAGACTCCGAGGCGGAGCCCTTGAGCGCGCGGGGGCACGGGCCGGATATGGGCCGATGCCACTCGGGAGGCCAACAGACATCCAGTGGAATACGGCATTCAGGTGGTATGAGTCATGTGCGCGTATCTCTGGAAGTGGTTCAGAACAAGGCGCAACTGGCTTAAAGTGGCAGGTCATTGAGA # Right flank : CCCCGCCGGCACCTCGGGAAGGTCGCCGAGATGGCGCTGTTCCCCGCCGCCCTCATCGTCAAGACGCGGAGGGTATCTGTACCGCTGAGGTCGGTCGAAAGGCAGATCGTGGATCCGACGATGGGGCCGGCAGTGCAAGTGGTGCCTGCGGTGATCGACGCCCCGGCACGGTTGACGTGAGGGGTGCCTCTCAAGCAACTAGAGGCGGAGTGTGGCGGCGTGCAGAGTGGACCGTCGGCTGTCGGTTGTGGCTATCAACGAGAACAAAGTGATCGCGGGGCAGGCCGGGCCGGTATTGCCGCGTCGGTCCACCATTAGGCGGGGCCGACCAGCGTTACGAGGAGATGCCGGTCAGCGTGTCGCACTCCACGACCACGTTCACCGTCTTTCTCAGGCATGTGTCAGGGGCACCTCAATGAGTCCCTGACCACGTATGGCAGGGTATGCCGACGACTCACGCCGGCCGGGCTCCGCGCGGGACCCCGGCCCCGCTGTTTTCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 100929-99801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100928 29 100.0 32 ............................. CTGCAGAAGGGCTGGACCATGACAACGCTCGA 100867 29 100.0 32 ............................. CAGGCGGCCCAGCCGGGAGTCGTTGCGGTGTC 100806 29 100.0 32 ............................. CGCAGGTCAGAGGTCGCGCGCTGTCCGCTCCG 100745 29 100.0 32 ............................. GTCCTCGCCCTGAGTGGAACGCCAGGCCTGGG 100684 29 100.0 33 ............................. GTCCATGACTTCGGTCTGCACGCCGGCCGGGAA 100622 29 100.0 32 ............................. GCCCGAGCCCGTCGAACTCGCCACGGTCGTAA 100561 29 100.0 32 ............................. GAGATGCTCCGGGACCTGAGCCGGTGACCGCG 100500 29 100.0 32 ............................. CGCCTCATCTGGTGCCTCAGAGGCGGCGAGCA 100439 29 100.0 32 ............................. TCGACGGCCAGCACCGCGTACTCCTCCGCTGC 100378 29 100.0 32 ............................. TTCTCCAGCAGCACGGCAGCCTCCTATCCGGT 100317 29 100.0 32 ............................. CTGGTGCTACAGGGCTGGTCACCGCAGCGCGC 100256 29 100.0 32 ............................. TGCGGCCTGAGGGCGACGGCGACGACGGCCAG 100195 29 100.0 32 ............................. GACGTCGTCGCTCACCACGGCTCACCGAAGCA 100134 29 100.0 32 ............................. CTGGTCTTCGTGGCGCGCTGCCGGGGCCTGTG 100073 29 100.0 32 ............................. ACCGTGCGGCTGCTGGCGGAGATCACCACCTG 100012 29 100.0 32 ............................. TCGCATACGCCGGCGGTGACGCGGAATTCGGC 99951 29 100.0 31 ............................. TACCTGCGCTGGGCGCCGTCCACCTGGACAC 99891 29 96.6 32 ................T............ AGCTCCTCCGTACCGTCGGACGTGCCGGCAGG 99830 29 100.0 0 ............................. | G [99809] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TCATGTCGTGGTGGGCCGGGTTCTTCGAGGGCGTGCGGACAGTGTGCCCGCCGCGCCACCCCATGCGGTGGCGCACGGTGTGGCGCATGACTCGACTAGGCCGGCCGCCCGTGATCTAGCACCTCTACTGCTGCTCGCGCACGGTGCCCGGTACGCTTCAGCGCTCCGGGTAACGTCCGGGTTGGGCCGCGCCGAGCTACTGAAGTGCGGCGATACGCAGGCATGGGGCGCGCCCTTCTCGCGTACAACCCGACAACGAACAGGGCTTCGCCTTCGAGACCACGACGACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTAGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCATCGAAGCGCCGCCGCTTCGGAAGCAGGTAGATCCAATTGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGCGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : GCGGCCTCCAGGTAGTCGTGCTGGTTAAGCGCCAGATGCGAGGTGTTGCGGGGTCTGCACCGCAGGGTCAGCGGTTGCCGGTCCAGACAATGCGTTCCGCGAACCCACCCCGCTGCTCGGCCTTCGCTGCCCGGATCTTCTCCAGCTGGGTGGGATCGACGCCGAGGTCGGCCGCGAGGGCGAAGGCGACCTCGAGGACGTCCGCGAGCTCTTCGGGGGCGTCGGTCTCGTCCGCCTCCACGTACTCCGCGACTTCTTCCTCGAGCTTCGCGCCGAGGCGCTTGCGGTACTCGGCCGGATCGGCCACGTAGACCTCCGGCTCGGCTCCGTCCGCGCGGATGATCTGAGGAATCCGGTCCCGTACCAGCTTGCCGTAGAGCACGTACTTCTCCAGCACCAGATCGCCATCGGTCGGCCAGACGGCCGGGCCCTCTGTTGTTCGAGCCTAGAGATGGGGCCTCAACCGGCGCCATCAGAAACAGAAATCCCACCCGCAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 108982-106635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108981 29 100.0 32 ............................. ATCCCGGGCCCCTTCTTGGGACCGCTTCAGAT 108920 29 100.0 32 ............................. CGCATCCACTCCCAAATATCAACGATTACAGG 108859 29 100.0 32 ............................. CTCGACCTGGAGAAGGAGAAGACCAACTCTCA 108798 29 100.0 32 ............................. CGGACTCCCTCCGTAACGCCGACTGGTTCCGG 108737 29 100.0 32 ............................. CCGCAGGTCGCATCCGATCTCCCCCCTACCCG 108676 29 100.0 32 ............................. TGCCGGCGTCGTGGATCAAGGACGGAGGCTGA 108615 29 100.0 32 ............................. CTGGGGGAACCGCCGGTGCTCGCGGAGATCAA 108554 29 100.0 32 ............................. CCGATCGACATACCCGTCCGCACATCCCGGCC 108493 29 100.0 32 ............................. GCGGCCTCGACCGCTGCCCGGCGGGCGTAGGC 108432 29 100.0 32 ............................. GAGCACAGCGCCGGCAGCCACGCCGGCGGCGG 108371 29 100.0 29 ............................. TCTGCCGCCGTACCGTCCCGCCGCTCTTG 108313 29 100.0 32 ............................. ACCGAATAAGCCCGCACGGCAATGCGAGAAAA 108252 29 100.0 33 ............................. TTCTCTGGTGTGGCCATCAGCCCGCCACCTCCG 108190 29 100.0 32 ............................. TCGCACGACAGCTCGCCGCTCTTGAGCCCACC 108129 29 100.0 33 ............................. ACTTCCGCCAACAACGCCAACAACACCGGAGAG 108067 29 100.0 32 ............................. TCGTCGCCACCCACCGCACCACGCAGGAGTCC 108006 29 100.0 32 ............................. CCTGACCCCGCCGGACGTCTGTAGCTTCCTGG 107945 29 100.0 32 ............................. GACCGTGAACGACGAAGCCTGCGGCGAAGGAA 107884 29 100.0 32 ............................. CAGCGCCGCTAGCCCACCACGAAGGGCGGGGT 107823 29 96.6 32 ............................A CCCCGTCCTCTTCCGGCGGCGCGTCGGGCGAG 107762 29 100.0 32 ............................. CATGCGCAGACCGTACGCGGGACCAGTGACAG 107701 29 100.0 32 ............................. TCGGTGCGGGCGGCGTCCCGCTCGGCGCGGGC 107640 29 100.0 32 ............................. TCTCTTCGCTCGTCGGCCTGAGGCCTACTTCG 107579 29 100.0 32 ............................. TATGCGCGGGATCTGAAAGTCCTGTTCTGCAT 107518 29 100.0 33 ............................. GACCAGCGCCGGGGATACCCCGAAATCAAAGTC 107456 29 100.0 32 ............................. ATCCGCTCGTGTCCCCAGGACCGCATCGTCGA 107395 29 100.0 32 ............................. CGCGGTCGCGTGCCGCAGGCCCGGCCCGGTGT 107334 29 96.6 32 ............................A CAGCCGAACACGTTCGCTGAGGTCAGCGAGAA 107273 29 100.0 33 ............................. GCGTGGGCACACCTTCTGTGGCTGAGGCCCAAG 107211 29 100.0 32 ............................. ATGACCCCCTTCGAGGTCCTGGGCCGGATCGG 107150 29 100.0 32 ............................. CAGCGGCACGACGCCCGAACCGCTGCCGACCG 107089 29 100.0 31 ............................. CCAACACGGTGAAGGCGCCGGGCATGCCTGG 107029 29 100.0 32 ............................. ATCAGAGGGTTCGCGAACGCGCCGAAGCGGAC 106968 29 100.0 32 ............................. TGCCCGTAGTCCTTGTCCAGTCGCCAGGTCAG 106907 29 96.6 32 T............................ GCCCGCTACCAGCACTCCTACGAGGAGCTGCC 106846 29 100.0 32 ............................. TGTTGTCCAGTATCGGCCGTCGGGCAGGTCTG 106785 29 96.6 32 ................A............ CACACGGCCCCGCCAAGGTGGTCGCCGGTGGC 106724 29 96.6 32 ...T......................... GTCGGCGTTACCCGGGTCAGGGCCGACCTCAA 106663 29 93.1 0 ...........G.............A... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TGGTCATGCTCGAGTCGGACAGCGGTGTCGCCGTTCCCGCCGGCCGCAACTATGCCGATGGGATGACCTGGTGACGGTGATCGTGCTCACCCAGTGCCCGGAAGGCCTCCGCGGATTCCTTACCCGCTGGCTCCTTGAGATCTCGCCCGGAGTCTTCATCGGCGGACCGTCCGCCCGCGTCAGGGCGGCACTGTGGGAGGAAGTGCAGCGATACGCGGGCATGGGGCGAGCCCTTCTCGCGTACAACACCGACAACGAACAGGGCTTCGCCTTCGAGACCCACGACCACAAATGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTCGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCGTCGAAGCGACGCCGGTTCGGAAGCAGGTAGATCCGATAGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGTAAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : TGCCGACCGTTCTTGATCTTGCTCCGGGAAGGGGTCGTTTTGTGACAGTCGCCCAGCGTTTAGCCATAGCCCCTGCTCGGTCCAAGAGGACACCGCTGTCGTCCTTCGCCCGCTCATGCCGGGACGCCCTGCGCTGTCCCGGCAGCCCGCAGAGGAAGTCAGGTGACCAGCAGCGGATCAGCGCGCAAAGGTGCTCCGGCGACGGCGAATGCTGGCATCAGTGACGTGCGGGGCGGTGACGGTGCAGTCCTTCGGAACGGTTCGGATGGCCAGGGTCACACCGCTGGTGATCTGACAGCGGCGGCCGATGGTGACGCCGGGACCGATGCTGATGTTGTTGCCGGTCTGGGTGTCGTCGCCGATGACGGCCCCGAACTGTGTAGTCCCGCACCGGTAGAGGCCGGTCATAGTGCGGATGATCACTTCCCGATCGGGTGTACGCATGTCCGTGGTCATGTTGATCGCGGCCACGGTGACGCCGGCGGAGAGGTGGGCGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 129296-129810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011666.1 Streptomyces sp. Mg1 plasmid pSMg1-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129296 29 100.0 32 ............................. CGGAACGCGACATCCGCAGTTTACTGGACTCC 129357 29 100.0 32 ............................. GTCGACACCAGCGAGTCGAGCCCGTCGAACTG 129418 29 100.0 32 ............................. TGTGCGATCTCGTCGGGGACCGGCGGCCGGAA 129479 29 100.0 32 ............................. GTGATCCGGTACCCGTTGGTTGGGAAGTCCGG 129540 29 100.0 32 ............................. TACCGGAGCGGTACCCCCTGCGACGAGCTGAG 129601 28 96.6 32 ........-.................... GCGCCGTCCCCATCGCTCGCTACATGGCTGTA 129661 28 96.6 32 .................-........... GGGCAGATCCAGCCCGAGCACGTGGAGATCCT 129721 29 93.1 31 ......................GC..... AACTTCGACGTCGACCCTGGCCCAAGCTGCT 129781 29 72.4 0 T.C..........GG.......G.G.T.T | C [129792] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 CTGCTCCCCGCGCATGCGGGGATGAACCC # Left flank : CGAGATCAGGACTTTCAGGGGAAGGTTGCAGGCCGGGAAGGACCCGGTTTGGGGCGGGGAGGAGGAGGTTCCGGATGATCGATTAACGCGGCTGGGTGTGCCTTCTCGCCTTGTTGAGCGGCCTCCGGTTGCGGAGAGCAGGAGCTGCTTCGTCATGTCCCGTCGCCTGAGGCAACGCCTGGCTCCAACGGGGGACGGAATGGGGCTGCTGGTGCCGCCCGTCAGTCGGTCCGTGACGCGGAGCGGCGGAGTCGTAGTGAGGCAATTTGACCGAACGGTGTGCGGGAGCTCGGTGCTTGTGATGCGAGCCAATCCATGAGGGTGCAGACGAGCGGGACACTCTCATTCCCGCTCTGCGGCATGGCAGCATCACTGGCGTCCAGCGCGCCGACCCGGCACACAGGAGATTCGCAGAAGCCGGAGCTATGTCGCATTTGCCGGATTTGACGAAAGTGGTCGAGAGCGGCGGATGACGCGCATAAAATCCCAGCTCAGGAAGT # Right flank : TCCGCGGCGAGGTCGTTGATGCAGCGTGTGCCCGTGTCCGTCCCAGCGGCGAGCCCGTGATTTTGGGCGAGGGGTTCAGCGGTTGTCCCGGGCACGGGAGTGGGGCGCCACGCCGTGAACGCGGTTGGGGCCCGCGGGCGTTTCCGCGTCAATCGTGTTGGTGGTGGGGGAGGGGAGAAGGTTCGTGTGCCTTATTCGTCGGCGCGGGGTTTGCGGTGCCTTCCCGTCCCTGCGGCCATGGGGGACCGGGCGGGAGGCGTTGGCCGCGCGTCGTCGGCCGTCTGGGGGTTGAGGAAGCGGCGGGCTGCCGCGAGGTCGGCGACCGTGGCCAGCGTTGTCCACTGGTAGCCGTCCCATTCCAGGATGAGGCGAGGGGCGTTGGGGTGGACGTGGGCTCCCTGCGCCCCTGGGACGAGGGTGACGGCCTTGCGTTCGCCGACGGGGCGGAGTCGCTTTGCGCGGCGGGCCGCCCATCGGTCCAGGGGGTCGTCCATGGTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8016-7499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011664.1 Streptomyces sp. Mg1 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8015 29 100.0 32 ............................. TCGAGGGTGAGCTTGTTGCGCTTGCTGGGCGG 7954 29 100.0 32 ............................. GCTGAGGGGGTGTGGTCACGGGGTCGACTCCT 7893 29 100.0 32 ............................. TCGGGCCACCTCCAACACGATCGCGCGGTGGT 7832 29 100.0 32 ............................. ATGCCGCCGAGGTCAAGACCGCGCTTGACCGG 7771 29 93.1 32 ....................A.......C AGTTCATTGAGTTCTACGAGTCCAAGGAGGGC 7710 29 100.0 32 ............................. GGCGTAGCGATGGCGCAGCTGGTGAACATCGT 7649 29 100.0 32 ............................. TCCGCGGTCGTGTAGACGCCGCCGGTGTCGTA 7588 29 100.0 32 ............................. GAGCACGCGGGCTACCGCGAGGGAGTGGCGGC 7527 29 93.1 0 ..........................C.T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : GCGGAACTCCTTCCGCTATGCCGCCCGCCAGGACTGGGACAAGATCGCCAAGCTCCTCAAGCCCGTCTACACGGCGGCGACCGAGGACGCCGCCCTGGAACGGTTCGCCGAGTTCGCAGACGTCTGGGGCAGGAAGTATCCGGCGATCGTCCGGCTCTGGGAGAACGCCTGGGAAGAGTTCACCCCGTTCTTGCGGTTCGACACCGAGATCCGCCGCATCGTCTGCACCACGAACGCGATCGAGTCCGTGAACGCGCGGATCCGGCGGGCGGTCAAGGCCCGCGGGCACTTCCCGAACGAGACCGCCGCCCTGAAGTGCGTCTACATGGCGATCATGTCGCTCGACCCCACCGGCCGTGGTCAGGCCCGCTGGACCATGCGCTGGAAGACCGCTCTGAACGCCTTCGACATCACCTTCGACGGCCGACTGTCCGCAGCCCGTCAGTAACCCCAACCACCCTCGATACACCGTTCGATTGACAGACCCCAGGTCAGGAAGT # Right flank : GCGCAGCCGACTCTGGAAGTCCTGGAACGTTCTCCGGCGTGCGTCAGGGGTTGCACGTAGCGCCCATAGCGCACGCGATGCTCATCGACCCGGAGTCACTTCGCGCGGCCCACTTGGGACGCCGCCGACATCCTGGACCGGGGCTACGCCCTCACCCACCCCGACCACCCACTCCTTGGTGCGAACGGTGCCGCAGTCCTGCGGGCTGTCGCCGAGCGGATCCATGCCCGTGGGCCCATCCCCGAGCGGGACCGCGGCCTCATCCACGGCGACCTGCACCGGGAAAACATGCTCCTGACCCCCAACGGCTCCATCGCCGTCATCGACTTCGATGACTGCGGCCTCGGCGCGTACACCCTCGACATCGCCACCGTCCTCTCCTCGATCCACCGCCTGTGCCGCAACGATTCCGAGGCCTACGCCGACTTCGCCTACCGCTTCCTGACCGCCTACGAGAAGATCCGACCTCTCCCCGAGTCCATGGACCGCTTCGAGGACTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19214-22535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011664.1 Streptomyces sp. Mg1 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19214 29 96.6 32 ............T................ GCGCCGCCGAGGGCCGGACCTACGCGACGCTT 19275 29 96.6 32 ............T................ CCTCGCTGGCAAATCGTCGTCACCCTGGCCAC 19336 29 96.6 32 ............T................ AACACCTCGCCCCCAGCCGACACGGAGACAGC 19397 29 96.6 32 ............T................ ATGTAGTGCAGCTGCTTGGTCGGTTCCTTCAC 19458 29 96.6 32 ............T................ GCCCTCACCGTTCACCCGGCGAGGGCCTTCTG 19519 29 100.0 32 ............................. GTCTACCGGTCCACGGCGACCGGCACCGAAAC 19580 29 100.0 32 ............................. TACGACAGCGGCGGCTGGCTCCAGCCCGGAGT 19641 29 100.0 32 ............................. TAGTTGTGGATGCTGCTGGTGACCGCCTTGGG 19702 29 100.0 32 ............................. TGGCAAGACCGAGTGGGGGTCCGGGAGCGGGG 19763 29 100.0 32 ............................. GGACTGGGCTCCCCTTCGCCTTCCTCCACTTC 19824 29 100.0 32 ............................. GCCGGCGCGCTGATGTTCTCCCGGCAGGTCTC 19885 29 100.0 32 ............................. CGTCCGGAGCCCCAGCCGGAGCACGGTAGCCC 19946 29 100.0 32 ............................. CACGGCCATCGCCCACAGGGCGGTGTGGAACC 20007 29 100.0 32 ............................. CCGAAACCGGGCCCCGGAACCCCCGCTACGGC 20068 29 100.0 32 ............................. ACCACGCTCTCGGGCGGCATCGCCGTGTACCT 20129 29 100.0 32 ............................. CAACGTCACGTGACACTCTCGCGGGTCTGTCA 20190 29 100.0 32 ............................. CTGCGGCCGTTCTCGGTGTAGCCCTCGGCGTC 20251 29 100.0 32 ............................. CCGAAGAGGGAGAGCGGGTGCTGCTGGTCGAC 20312 29 100.0 32 ............................. AGGGAGAAGAAGAAGGAAGGAGAAGGGGTGCG 20373 29 100.0 32 ............................. GCGGCCTTGGCGGAGCGGGACGGGTCGGCGTG 20434 29 100.0 32 ............................. CGACCTCATCCGTGGCGCCGATCGAGAGCAGC 20495 29 100.0 32 ............................. CCGAGCGCCTACCTCATCGACTCCACCAGGCA 20556 29 100.0 32 ............................. GCAAAGCGAGCCGAGGAGCAGGCTCTCCAGCA 20617 29 100.0 32 ............................. CTAATCAGCCCCGACACCGGCGCCAGGCTGGC 20678 29 100.0 32 ............................. ACGCCATGACACCCCTTGCTCAGTGGACCGGC 20739 29 100.0 32 ............................. CTCCTCGGCCCGATGAACCTCTGCGTCGACTA 20800 29 100.0 32 ............................. GCTTCGCTGACCAAGCTGGCGGACAAGCACAA 20861 29 100.0 32 ............................. CAGACAGGGACGAGCATCAGGAGCAGCAGTGT 20922 29 100.0 32 ............................. TTCGAGAACTTCCTGTCGTATTCCTCGACGCA 20983 29 100.0 32 ............................. GCCGGCATGGAGCCCCCTGCCCCGCCGCCGAT 21044 29 100.0 32 ............................. GTCGAACCGAACTACATCGCGGTGGACAACGC 21105 29 100.0 32 ............................. CACGGTCATCGGCATGATGTGCGGCTGCTCTT 21166 29 100.0 32 ............................. AAGCGGTGGCGGGCGGCGTCCGGCTGCCAGGC 21227 29 100.0 32 ............................. ACCCCGCCACCCCAGTGCCGGGGGAGCAGACA 21288 29 100.0 32 ............................. ATCTCGATCGCTTCGGTGTTGCGGACGCTCTT 21349 29 100.0 32 ............................. ACGGTCTCGGTCGCATGGATCGTGGTCACTGC 21410 29 100.0 32 ............................. CGGACCGACTACGGGCCGACCGTCCTCGAAGA 21471 29 100.0 32 ............................. CATTCGCAGCTGAACGCGGGGCGGCCCGTACG 21532 29 100.0 32 ............................. ATCCACCGGCCCCGCTGACGTAACACCCGCCC 21593 29 93.1 32 ..........................G.C GAATCACACCGCGTGGTCTGCCAGATTCAGAT 21654 29 100.0 32 ............................. TCGTATCCGTTGCACGGCTCCGGGTCATTCGC 21715 29 100.0 32 ............................. CCATTTCCAGCGGTCGCAAGAAGCGCGGCCGT 21776 29 100.0 32 ............................. TGAAATGGCTCGGGAATCCCATGCTGACGGAT 21837 29 96.6 32 ............................A TGGCCCGCTCGGTCTTCCTGTTCTCGTACGCC 21898 29 100.0 32 ............................. GCTCGGGTGACTCGGACGCGCTGGCCGTGGGT 21959 29 100.0 32 ............................. GGAGGCTCCCCCGCTTGTGCGTGGTCGACCGT 22020 29 100.0 32 ............................. CCGGCCGAGGTACTCCTTCTCGAACGGATGCT 22081 29 100.0 32 ............................. CATTCCTCACCGTGCCCGAGGGGAGTGATGCC 22142 29 100.0 32 ............................. AGTGTTCGTGCAGGTCGGGACGGGGAACTGGA 22203 29 96.6 32 .................A........... AACCTGTTCACCCGGCACAAGGATCTCTGGCG 22264 29 100.0 32 ............................. GTCGGCACCCCCGCCGAACCCCTGAAGTCCGC 22325 29 96.6 32 .....................A....... TGGGAGATCACCCCGGACCGCGAGCTGACGTA 22386 29 96.6 32 ....................A........ CCGGTCAGGCGGACGGCGAGGACGCGGGCGAG 22447 29 100.0 31 ............................. ATCCTCGGGGTGCGCGGGGGGTGCGGCAGGG 22507 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.3 32 GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Left flank : GAAGTACTCCGGCTCCCGCCGCACCGCCGCGAAAGCCGCGGGAACCTGAGCCTGAAACGGCGGAGTGATCTTCCCGAGATCGTGCAGACCCGCCCAGAACGAGAGGACCTGCCGCGCGTCCGCCTCGGGCAGTTGTAACGCGTCCGCGATACGCGCACGAGCTTTGGAGCCCAGCACCACGTCCCACAGCACGCCGAACACAGCTGCTGCGTCCAGCAAGTGACAAATGACCGGGTAGGGGCGCTCCAGGCCACGCTCCTTCGCCCACAGACGGCAGTCGGGGCCGGCGACACGCACGGGGACGACATCGGGTTCTGTCATGGCATCACAGATAGCAGGCGGCACTGACAACGCACCGATCGGCGAACTCCTGAGGTTGCTGTCCCGTAGGGTTCGGCGTTGTGATCGAACTTGCGGAGGCAGAGGCTCTGACGTTCCTCTCACGAGGAGAGCAGGGTCAAGAAACGGCAAAGCCCTCATAGACTGCCTGCTCAGGAAGG # Right flank : GCAACCCGCGGATCTCCTGCGGCATGACCGGGAGCAGCACCTCAACCCTCTGAAACGATCTCAGGCCCGTTCTCGGGCACGGGCCTCTTACTGATCGTTTCAAGGAGACCTGCAGATGCGAGACGGCAGCCCCGTAGGCATCCGGCAGGTCGATCCTGGCCACGGCCTCCAGCGAGAAGGCCGGCGCTCCCGTCCGGGCCGCCCTGCCACAGCAGCCGGACCTTGCGGGCCCGGTTGAGGCCCGAGCGGTGGAAAGGATTCATGCCGCCGTCGCCGATCGGTGCGCACCAGCGAAACAAGACCTGGTGCAGCGGAGAGTGGTTCAGCGCGTCGGCGAATGCCTGCACGCCGCGCTCCGACAGCGGGCGCCAGGTAGCCGATGCTTCCACCGGAACGAACATCCCCGTACGCACGAGGAAGTCGGCGCTCGGCTTCATGGGGTCGTCAGCGGGCAGGTCGGCCGGCGGCAACCGCAGTCCGGCAGCCACAGCCTGGGGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //