Array 1 43109-42422 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NUTX01000038.1 Bacillus thuringiensis strain AFS034084 AFS034084_114_G5_Contig51_140618, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     43108	    32	 100.0	    34	................................	ACAAGATACGAGAATTTAATGACGTCACCCACAT 	
     43042	    32	 100.0	    34	................................	TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 	
     42976	    32	 100.0	    35	................................	ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA	
     42909	    32	  96.9	    32	.......................A........	GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT   	
     42845	    32	  87.5	    33	.........T.A.......T...A........	TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA  	
     42780	    32	  93.8	    33	.......T.T......................	TAGGAGTTATTAATGGCTTTAGATGTTAGACCA  	
     42715	    32	  90.6	    34	.........T.........T.A..........	TACCTCGGGTTTATATTTATCTGGAATGCCCATA 	
     42649	    32	  93.8	    33	........CT......................	TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA  	
     42584	    32	  96.9	    34	....................A...........	TACCTCGGGTTTATATTTATCTGGAACGCTCATA 	
     42518	    32	  90.6	    33	.........T.A.......T............	ATAATATCACAATTTTGACAAAATTCAGTCATG  	
     42453	    32	  90.6	     0	A.T.................T...........	|                                  	
==========	======	======	======	================================	===================================	==================
        11	    32	  94.6	    34	GTCGCACCTCATATAGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT
# Right flank :  AGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATTA

# Questionable array : NO	 Score: 8.44
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCTCATATAGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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